Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d038143_circ_g.1 |
ID in PlantcircBase | zma_circ_009105 |
Alias | zma_circ_0002371, AC212068.4_FG005_C1 |
Organism | Zea mays |
Position | chr6: 149268682-149269693 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | find_circ, CIRI2 |
Parent gene | Zm00001d038143 |
Parent gene annotation |
GDSL esterase/lipase |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d038143_T001:2 Zm00001d038143_T002:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.183413783 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
149268691-149269690(+) |
Potential amino acid sequence |
MDMPLLNAYLDSLGTPSFRTGVNFAQAGCSITPAKPTSVSPFSFGLQIKQFFAFKNKVTKLLSE GDMHSRYIPQQDYFSEGLYTFDIGQNDLAGEFYSRTEDQVIASIPTILLEFENGLKKLYDQGAR KFWIHNTGPLGCLPQNIALFGKDPSQLDELHCVAKHNRAAKLFNLQLHALCTKLRAEFDGASIT YVDIHTIKYSLIANYSRYVEAMDMPLLNAYLDSLGTPSFRTGVNFAQAGCSITPAKPTSVSPFS FGLQIKQFFAFKNKVTKLLSEGDMHSRYIPQQDYFSEGLYTFDIGQNDLAGEFYSRTEDQVIAS IPTILLEFENGLKKLYDQGARKFWIHNTGPLGCLPQNIALFGKDPSQLDELHCVAKHNRAAKLF NLQLHALCTKLRAEFDGASITYVDIHTIKYSLIANYSRYVEAMDMPLLNAYLDSLGTPSFRTGV NFAQAGCSITPAKPTSVSPFSFGLQIKQFFAFKNKVTKLLSEGDMHSRYIPQQDYFSEGLYTFD IGQNDLAGEFYSRTEDQVIASIPTILLEFENGLKKLYDQGARKFWIHNTGPLGCLPQNIALFGK DPSQLDELHCVAKHNRAAKLFNLQLHALCTKLRAEFDGASITYVDIHTIKYSLIANYSRYVEAM DMPLLNAYLDSLGTPSFRTGVNFAQAGCSITPAKPTSVSPFSFGLQIKQFFAFKNKVTKLLSEG DMHSRYIPQQDYFSEGLYTFDIGQNDLAGEFYSRTEDQVIASIPTILLEFENGLKKLYDQGARK FWIHNTGPLGCLPQNIALFGKDPSQLDELHCVAKHNRAAKLFNLQLHALCTKLRAEFDGASITY VDIHTIKYSLIANYSRY(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Ma et al., 2021b;Zhang et al., 2019 |