Detail information of AT2G34357_circ_g.8


General Information
CircRNA Name AT2G34357_circ_g.8
ID in PlantcircBase ath_circ_016409
Alias NA
Organism Arabidpsis thaliana
Position chr2: 14503556-14504153  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT2G34357
Parent gene annotation ARM repeat superfamily protein
Parent gene strand +
Alternative splicing AT2G34357_circ_g.1 AT2G34357_circ_g.2 AT2G34357_circ_g.3 AT2G34357_circ_g.4 AT2G34357_circ_g.5 AT2G34357_circ_g.6 AT2G34357_circ_g.7
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G34357.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGCTAAATCACCCGTTGAAGGACTACACGCAAATTTAAAGAGCATGGTTGAAGGCTTACTAAAG
TGGCCAGAAGGAACAAAAAATCTGTTCAAAGCAAAGgtaaataaaaaaacaagaaacagagcct
atgacgtgcttgttcagattggtcatgcatacgcagatgaggagaatggtggagacaacgagaa
gttgcatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTAAATAAAAAAACAAGAAACAGAGCCTATGACGTGCTTGTTCAGATTGGTCATGCATACGCAG
ATGAGGAGAATGGTGGAGACAACGAGAAGTTGCATGGGTACTTCGATATGGTATGTATTAGTTT
AATCCTTTTTGCAGGAGCGTTGTTTTTCATTTCTTTATCAATATTGATTTTTGACCTCTGCTAC
AACCTCACAGGTGGTTGGTTGCTTGGCTGGCGAAAAACCTCAAATGATTAGTGCTGCTGTCAAG
GGTGTAGCTCGTTTGACATATGAGTTCTCCGATCTCATATCTAGTGCTTACAATTTACTTCCTT
CAACATTTCTTCTCCTCCAGAGGAAAAATAAAGAAATTACAAAAGTTAGTTACTCATCTTCCCT
TTCAAGAGTCCACAACTTTATCAATGATACACAATGAACTGTTTCCTTTTTCTGAAACTTACAA
CTAATGTATTTTGGGAAACAGGCAAATTTAGGTTTGTTGAAGGTGTTGGTGGCTAAATCACCCG
TTGAAGGACTACACGCAAATTTAAAGAGCATGGTTGAAGGCTTACTAAAGTGGCCAGAAGGAAC
AAAAAATCTGTTCAAAGCAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.189443674
Functional Information
Coding potential Y
Potential coding position 14503667-14504150(+)
Potential amino acid sequence MVVGCLAGEKPQMISAAVKGVARLTYEFSDLISSAYNLLPSTFLLLQRKNKEITKANLGLLKVL
VAKSPVEGLHANLKSMVEGLLKWPEGTKNLFKAKVNKKTRNRAYDVLVQIGHAYADEENGGDNE
KLHGYFDMVVGCLAGEKPQMISAAVKGVARLTYEFSDLISSAYNLLPSTFLLLQRKNKEITKAN
LGLLKVLVAKSPVEGLHANLKSMVEGLLKWPEGTKNLFKAKVNKKTRNRAYDVLVQIGHAYADE
ENGGDNEKLHGYFDMVVGCLAGEKPQMISAAVKGVARLTYEFSDLISSAYNLLPSTFLLLQRKN
KEITKANLGLLKVLVAKSPVEGLHANLKSMVEGLLKWPEGTKNLFKAKVNKKTRNRAYDVLVQI
GHAYADEENGGDNEKLHGYFDMVVGCLAGEKPQMISAAVKGVARLTYEFSDLISSAYNLLPSTF
LLLQRKNKEITKANLGLLKVLVAKSPVEGLHANLKSMVEGLLKWPEGTKNLFKAK(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017