Detail information of Zm00001d025222_circ_ig.1


General Information
CircRNA Name Zm00001d025222_circ_ig.1
ID in PlantcircBase zma_circ_010300
Alias zma_circ_0000036
Organism Zea mays
Position chr10: 109970790-109971025  JBrowse»
Reference genome AGPv4.38
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues leaf, root
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTAGTCAAAGAATGCGATAGTCAGTCCACAACCAGCATTAGGAACCTTCATCATGTTGCAGAT
ATACCAGCTTCCTAGGGTTGTCTCATAGATTTCTAGgacatgctggcatgcagatctagtctgg
agtcctgtgcgcaagacacttgtcacaatgatatttgtgagatggtctgaaggtttggaggttg
gcttcgat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GACATGCTGGCATGCAGATCTAGTCTGGAGTCCTGTGCGCAAGACACTTGTCACAATGATATTT
GTGAGATGGTCTGAAGGTTTGGAGGTTGGCTTCGATTATGTTTTTCTAAGTAGGATATCACCAT
AAGCTTATTCTAGTCAAAGAATGCGATAGTCAGTCCACAACCAGCATTAGGAACCTTCATCATG
TTGCAGATATACCAGCTTCCTAGGGTTGTCTCATAGATTTCTAG
Conservation Information
Conserved circRNAs NA
PMCS 0.107015537
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b