Detail information of BGIOSGA015233_circ_g.1


General Information
CircRNA Name BGIOSGA015233_circ_g.1
ID in PlantcircBase osi_circ_014272
Alias Chr04:18178604_18180812(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 15817689-15819898  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA015233
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   Yes-No
Splicing signals   TG-AC
Number of exons covered BGIOSGA015233-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCCCCTGGAGGCACCGGTCACAATAACAACTGGAGCTTCCAACTTTGTAGCATCTTGCACAAG
TGCTTGCTCAACAGCTGCAACATGGGTCCGCACGCCattgatatttctgcttgcatattcccta
gctactgttttcgtcaaaccaataaccccagccttggcagcactgtaattagcttggccaatat
taccaaca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTGATATTTCTGCTTGCATATTCCCTAGCTACTGTTTTCGTCAAACCAATAACCCCAGCCTTG
GCAGCACTGTAATTAGCTTGGCCAATATTACCAACAAGACCAACAACTGATGCTATGTTGATGA
TTTTTCCCTGCATTTCAACACAAAAAACAAGCAAATCAGTACTCATGGTGACATGGATATGAAT
AGAAGCTCTTTTTAACAAAACTTCTTAAATTCAGACCACAAAATGAATAAAATTAGTTATTATT
ATGAAACCTGACTAAACTTGTAAGCAATATTAAGATATTTTTCAAGATATGATAAAGATATTTT
TCAAGATTTCATGTGTATTATCAGAATCGCCAAAAGGGACCATTGTTAATCCATGAATACGAAG
ACGCAGCAGTTAGCACCCAGTATAGTAATAGAAAAGCATTCTATGCAAACCAAACACTACCTTT
TTCTTCTTCATCATTATTTTTGTAGCAGCCTGCAAGAATGTATACAGGTAAGATGAATAATGTT
CTTCAAGACTTCAAGTAACCAAAAACAGTACAATACAAACTTACTTGTGTACAGAGGAAAACAC
CAGTAAGATTCAGGTCAATTACGTCTTGCCATTGTGATTTCTTCATCCTCATTAATAATGTGTC
TCGGGTAATTCCTGATAACAAGATGTTCTTTTAATTTACAGACAAATTGATTAACATGATAGGA
AGCTAAAAAAAATGTAAAGAAATGAAACTACAATGGGGCCCAACCTGCATGTTTACCAGCACAT
CAATTGTTCCCCATTTATCAAGAGCCNTGGTAGATTAAGTAATCATAAACGAGTCATAGAGTGA
AGAATTGATATAAAAGTATATTTAAAAGTGCATTTTTATTACATAAAGAAACTGCACTTACTGC
TTTCATCATAGAATCCACATCGGCTTCTTTTGAAACATCTCCCCCAAAGGTAATAGCCTGACCA
CCACATGCTTCGATCTGGAAAAATAACATTATAATTATCTGATGGAACTAAGGATAGTGTGGGA
AACCAAAAGCAGTTTTCTATAGTATGATTTGTATATTTGTAGGTAGATGTCTCTCCAAATTTCG
CTTGAACTGCCCTTTTTGACCATGGCGGTATGGAGAACTTTCAAATTGATCTAAAATAACTACA
CTTATAAGTAAAAGTAGTTAAATATGGTTGAATCAACCACAGTAGAGATTCATCTCACTGTTTC
TTGCTAATTATTATCATTATTATTACTATCTACTAGTTTTGAAAATATGTTACAATGTGCCAAT
GAAACAGATGAAGATAGGAATGCAATTAGATTTTAAATTGCTCTGGGTTGACTTCCGAAATGTG
CAATTGTTTTGGAGTTGCGTTATCATAAACGGCAAGATTATTCAGCAAGATTTGTAAATGATAA
TACTTTAATGTATTCCTGCATGAGGCTAAAAGACAGGAAAATGAAAAATAGAATTAAGGAAATC
CAACAATGATGAGAATTAAGGAAAAAAAAGTTATCCAAAGCATAAACTGATTGCCTGTAGTAAA
ACTAAAATGACTAACAAATAGCATTAGATAGTGAAAATGTCCACACACACACACACAATGGTTA
CGATTTAGAATCACCTTAGGGTTATCCTTATGTTAAGATTTGACATTAAGTGACAGGTAACCAA
GTAATACCAAACAAAGTCTATCTACAAATACTAAATTTGGGAATCGACAAGCTCACCTCTTTGG
AGACTTCTTCAGCCTCTTTTGAGGATCGGGCATAGTTCACCAGGACCTGAAAGGCAGTGGCAAG
TCTCCGAGGTTAATCTTATCATTACACAAAATATAAGGAAAAAGAGAAATGGTCTTTTGCATTG
TTGAGAAGCCAAGCGGGTAGGCAAAAGTGTAAAATTACATCACAACATGTCTATCCCTCTAATA
AGATATCAAAGACAACAAATTGGAAAGCAACACATACTAGAACTAGAACCAGAATTCCAACACG
AGCAGTACCGCACGACACAAGTACACAAACAAATCATATCAGCTGTTGAACAAGCTGTTCAGAC
TTTAGTTGTGATGCTCACCTTGCACCCAGCTTTTCCAAGAGCCAATGCAGTCGCCTTTCCAATC
CCCCTGGAGGCACCGGTCACAATAACAACTGGAGCTTCCAACTTTGTAGCATCTTGCACAAGTG
CTTGCTCAACAGCTGCAACATGGGTCCGCACGCC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021