Detail information of BGIOSGA004109_circ_ag.1


General Information
CircRNA Name BGIOSGA004109_circ_ag.1
ID in PlantcircBase osi_circ_010446
Alias Chr01:27603304_27616805(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 29411379-29416091  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   AC-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACATAGAAATACAATTAAAAATAATAAAAGTTCAGAATTAAAAAAAAATATTAAAAGACAAGTC
TAGAGTCCATATAAGAATATATATAATTTACAAATAggttgcacgggcatgatgaatcaatctc
ttttcctggtcggagaaattgggggcaatgattacaacctacctcttctcagcggggtgtccat
tacaaaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTTGCACGGGCATGATGAATCAATCTCTTTTCCTGGTCGGAGAAATTGGGGGCAATGATTACA
ACCTACCTCTTCTCAGCGGGGTGTCCATTACAAAGATTCGCAGCTTCACTCCGAGTGTCATTGC
CAAAATTTCTTCTACAATCACCGTGAGTAACGTGCCTATGTTACATCTTTTCTGTGTACCTTGA
GACCCTGTATCAAGAAGCAATACAAAATTACATGGCTTGTAATGCAACAGCGTTGAGTTTGCAG
GAATTGATTGGGCTTGGAGCCAAGACGCTGGTTGTTCCTGGTAACCTCCCCATTGGATGTGTTC
CAAATTACCTCATGATATTCAAGAGTGGTAAGAAGGAAGATTATGAGCCAGAGACAGGTTGCCT
CAGGTGGATGAACGAGTTCTCGCAATACCACAACAAACTTCTTATAGATGAATTGGAAAAGTTA
CGCAAGCTTCATCCTGATGTGGCCATCATCTATGCTGATTACTATGGAGCTGCCATGGAAGTTT
TCCTTTCCCCTGAACAATTTGGTGAGTTCAGTTAATTCATTACTGTTTCTACTATGATTTCTTT
TCGAAAGCTTAACACTACTAATTTTAGTTTTTAGGTTACAAGAAAAATACTCTATATGTGTTCT
CTTAAATTCGATTACCTTAGTGCTTCTCAAACGAAGCAAATCTGTCTGTATCCTTCATATGTTT
GTAAGGTTCAGAAGTTTATTTTCATCATGTCACGTAATGCACCCCCACGCCAGACCTCTGTTCA
GATATCTGCATTCTTATCATGGTATATATATATATTATGTGTATTACAAATTATTGCATTCTTA
CCATGGTATAGATACATTATGTGTATTACAAATTAACATGACATCACTTGTACTGAGTTTAAGA
CTGAACTAACTAGTCGGTTTCACTAGAAAAACTGTCTAGAAGCCTTAATATGGAGGAAAGCGCA
TATTATCAAGAAAAAGAACATTTTTTTCTTCTGAGTATAGCTTGTTTAACATTTCCCTAACCTC
GGTTCAGGAATCGAAGATCCTTTGACAGCTTGTTGTGGTGGAGGAGGACCGTATGGTGTATCTG
GAACTGCAAGATGTGGATATGGTGAATACAAGGTTTGCGATGACCCACAAAAGTTTGGGTCATG
GGATGGCTTCCATCCATCAGAAGCTGCATACAAGGCCATTGCAATTGGACTGCTACGAGGTTCA
TATACACAACCTTCATTTGCTACCACCACTAATTCGTGCCCGCAAATTACTGAGCTCAGTTCTT
CTGTTGAATACAAGGTCCTCTACGATTTGTAATTCTGTAACTATATTTTTTTTATTATATAGAC
AATACGTGTGATTAAAAGATGTAACGATTGTGGTATTTTTGCCTCATTACAGAACTGCAGAACT
GTTCTACACAGAATGGCTGTTGCCCAAGTGATTGGCTGGCTCTTGTTATTCCTTCTCTGTTTTT
AGTCACGACCACAAGGTTTTATTTGTGGATCGTTTGATTCTTCGTAAATTTTTAAGATTTATTA
TTTCTTATAGGGTATGTGTAGTATTATTATAATTTAGCTCCATTGTTTTTCTTCTGTGTATAGT
GAAAGGGTTAGGGGTTACAGGGAGACAACTACATTCTTTGGTCACCTTGGCTGCGTGGCTGATG
TGGCCGTGATGTCGCTTCTCGTAGAGGCATTTCTTATGAGCGATATTGTATAAAGATCATGCAA
TCCGATCGCTTTATCTAATTTTTAGTGAGTTCCATGACTCTTATTTGTATCCACAATCATCAGA
AGTGCCATATAGCTTAAATAAAAAAACTGTCAGTGTCAAACATGTACGGGATATTGTTTAAAGA
AATCGAAATAACGAAAACACTTCAAATATTAGATAATATAAAAAGCACAACTACCAGTATATAT
CAATCAGGTCAATTATGTTGCAACATCATTAATTCACTACCTACTCTCCTTGCACCTAACACTC
TTAAGAGAAGCGATTATTTACTTAATACTCCCTCCGTCACAAAAAAACGTAAGCTAGTAAGGAA
TAAAATAATCTAGTACAACGAATATATGGATAATTGTACTAGATTATCCTATTTCATACAAGGT
TGAGTATATTTTATAGAGGAAGTAAAAAAAATATTGTCATTGTCGTTGGACTACACTTATTTTC
CCATTTCTATCTCCTCGAGTCTTATCACCTGAACCATTTTGTGATTTGTTGCTGCAAGCCTCAT
TATCGTTCGATAAGTTGTTTCACCATGGCAGAATGCGAACGACGGGGAAAAATATTTTCACTTA
CGCTTGGTTAAATATACATCGCCGAAAAAAAAATCAATATATGGATGTATCAAATCTTTTGGTC
CAAAGTAATGATATACAACAATCTGTGTATCTAAAAGTGTTACCTTACGACTTACGAAATAAAC
GTACTTGTAAACGCAACTCAACTGGTTAGCTTTCTCGTAGTAGAACGAAGTCCCCTTGATTCAA
ATCCTATACTTGACATGAGCATTTGCATTTACGGGTAATTATTATTTTAGCGATGAGTGATATA
TATAGGGATCAATGTGTACGTATCATGAGCGCTTAGCATTTATACTACGTTTTCACAGTGCATT
TAGTGGAGGATGGAGCGTACCTGTCACCGTCTCATGTGTAATAGGCTAACAGCGACCAGAGGCC
CTACTGACCTGTGGGCATTCGTCACTCGAGCCCACTTAACATTAACGAGCCACGCTTACGTTTC
TTGGAGTATTTGCCTTTTTTGGGCCAACGCGAAAAAACACCGCAGAGCCAATCCCAGTGGCCGC
TTCGCCTTCGGGCCCGACGTCGAGCAGAAGCAAACGAAAGTGTAGGAAGAATGGTCTCCTCCAC
TTCCGGAGGAGGAGCAGGCCTCCTCTCGCCGCCGGCGGTAGTGCTGGCGGTGGCAGTTGTGCTG
TCGGCGGCGGCGGCGGCGGCACAGGCGCTGGCGGCGCCGTGCTACCTGCGCGTGTTCAGCTTCG
GGGACTCGCTGGCGGACACGGGCAACGTCGCTTTCCTCTCCGGCAACGACCTCGCAGCTGTGGC
CACCCTACGGCGAGACCTTCTTCCACCGCGCCACCGGCCGGTGCTCCGACGGCCGCCTCATCAT
CGACTTCATCGGTATGCCTCATCATCCATCCATCCTGCAGGCCTCGTCTGCATCGATTGATCGC
TCGATCCGTTTGCTAATATGAGACGTGTAATTCGCGCGCGCGCGTGTGGGTACGCCGCGCCGCA
GCTGAAGCAATGGGGCTGCCGTTCCTGCGGCCGTACTGGGGAGGGCAGACCGCGGGGGACTTCG
CCAGCGGGGCCAACTTCGCGGTGGGCGGCGCCACGGCGCTCGGCCCGGACTTCTTCCGGGAGAG
AGGGGTGCCCACGGACGACGGTGTCGTGCACCTCGAGATGGAGATGGGGTGGTTCCGCGATCTG
CTCGACATGCTCTGCGCCGGCGACATGGACGGTATGTTTGAATCAACCAACACCTTTCGGCTTT
CGGCTTTCGGCTTTCGCCTTGCACCACCAACCTTTGAGGCTTCGACAATGACGTTTGGAACGAG
ATCGTGGCAGTTCTCATTTTCTAAGCACTAGTCATAGCAGTTTGCTATTAGTTGGTGGGGCTTT
ATTGTCTAGAAAGGTGCGTGTCTAGAGATACCACAATCATTAACAATATCTATCTATCTATCTA
TCCATCTATCTATTATCTATCTATCTATTATATTATTAAAGGATTAGAAAAAGGAGCCTCCACG
TTCGCTCACGTTCGCTCTCATGGCTTAGAAATTCTCACATTAATCGGAGAAAAAGAAAAAAACA
AAGTCCATATAGAAATACAATTTAGAAATAGTTGAAATTCGGAATTAAAAAATAAGGAATATTA
GAAGAGGAGACTAGAGTACATATAGAAATACAATTAGAAAATAACTGAAATTCTGAATTAAAAA
TAAGGAATATTAGAAGTAGAGTATAGAGTCCATATAGAAATACAATTAGGAAATAATAGAAATT
CGGAATTAAAAATAAGGAATATTAGAAGTAGAGTATAGAGTCCATATGGAAAATCAGAGTCCAT
ATTAGAAATACAATTTAGAAATAGTTGAAATTCGAAATTAAAAAATAAAGAATATTAGAAGAGG
AGACTAGAGTCCATATAGAAATACAATTAGAAAATAACTGAAATTCGGAATAAAAAAAAAGGAA
TATTAGAAGTAGAGTATAGAGTCCATATAGAAATACAATTAGGAAATAATAGAAATTCGGAATT
AAAAATAAGGAATATTAGAAGTAGAGTATAGAGTCCATATAGAAATACAATTAAGAAAAAAAAT
TCAGAATTAAAAAATAAGGAATGTTAGAAGTAGAGAATAGAGTCCATATAGGAATTTAAAACTA
ACTAAAATTCAGAATAAACATAATAAAATTAAAAGTAGAGTTTAGAGTCCGTATAAAAATACAA
TTTCTAAATAACTAAAATTCAAAATTATGAAAAATATGGGAAGAAGAGTTTAAATTAATATAGG
AATACAATTTAGAAGTAACTGAAATTTGAAATTAAAATTAAAGAATACTGAAAGATGAATTTAG
AATCCACATAGAAATACAATTAAAAATAATAAAAGTTCAGAATTAAAAAAAAATATTAAAAGAC
AAGTCTAGAGTCCATATAAGAATATATATAATTTACAAATA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021