Detail information of BGIOSGA014618_circ_g.1


General Information
CircRNA Name BGIOSGA014618_circ_g.1
ID in PlantcircBase osi_circ_014610
Alias Chr04:27859180_27861241(MH63RS2), Chr04:27871214_27873275(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 26071992-26074053  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRI2
Parent gene BGIOSGA014618
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-CA
Number of exons covered BGIOSGA014618-TA:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTGGAGAAAGTTCAAGAAAGTAGAAAGCAACATACCAATGCATATAATGGCAGTGCTTACACA
ACATTTGATTGCTTCCAATAGAGAAATAGACCTGCTcctgcttcatgtagagcctttagagcat
atccaccaggataattattgtaggatgccatgaaagttacaccagagtatcctagactatataa
ttatatgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGCTTCATGTAGAGCCTTTAGAGCATATCCACCAGGATAATTATTGTAGGATGCCATGAAAG
TTACACCAGAGTATCCTAGACTATATAATTATATGTGAGTTTCCAACGGTAGCATATATTGTGC
TACTTGAAAAAGGATACCATATTAATATTTTACAATATAACCATGGTTAAATTATTGTACCTGG
AAAGAAAGCCACCAATCATGAGAACATAAAGTAACTTCCACCCAGTTTTCTTTCTGTTATTATA
TCTGAAGATAGACAAACATATATTCATGGGTCGAAATCGCAAAGCAAAGAAAGAGAGGAAATGC
CATTCAATACGAAGGGTATGAAATAAAAGGAGTTCTGATAATGAAGCTAGCATTCCTAGCTTGG
ATCAGTAAATTGATAAAATAGTACTTCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCA
CATTCATATTGGTGTTAATGAATCTAGATAGATATATATGTCTAGATTCATTAACATTAATATG
AATATGGGAAATGCTAGAATGACTTACATTGTGAAATAGAGGGAGTAGGAACTAGATATGACAG
AAGATTGGTTATGCTCACATTCTGCTTGCTGCTAGTGAAGCAGACACATTAAGCATGGGAATCG
AAGCCATAATGAAGCGAAGCTCCTGAAACACAACATCAGTCATCATGTACAAGAATGGCCAAAT
ATAAGGATGGAACTAGTATCAAGAGATGTAGAGATACCTTATGTGGAAGCTTTGAATAAAGCAC
AACAAATGAGAAGACTGGAAGTATGTATGGCACTATCCTTCTGTCAAGAAGAGCACCGACCTGT
CACTGAAAAGGCTTCATGAGATACATTTCTTACTTCCAATAAAAAATCAAATAAAAAAAACAAT
AACCAATAATGCATTGATAGTACCACCATCAGAAAAGATACATCATAAAAATGTAATTAGTTGA
CTCAATCAAATAGTATGAAGTAACAGTTTTGATATAAAGTACATGTAGAGATGGGAAGCCAATC
AACTATTACTAGCTAAGCATCATGTTTCATGCATATTAAATACATGATAAGAAGGCATGGAATA
AGTTATATACTTGTTCAAGCAAAAGGCACATGCACTTTTTAGCCACGTAAGTAGCACAATTTCT
TGTATGGAAGTTTCTTATCTCACCATGCAAAGAGGATATGCTACCAGCATGGAGCGTGGAAGTG
CTGAGGTGAAGTACCAATGGATGGAATGTGTCTAAAGTTTATGGTAGTCATGGATAACAGGGCT
GGGAGCTTCGCATAAGTTTCAGGAGATAATACATAGATTTCACCACATGAATCTAAAAAGAAGA
AGAGGATAAGTCTTGAACAAGAAGTGTATATATGTTGCATCCTTTTTTGTATTCATGTGACTAA
TAGAGATTAACATCATGTTCAGTGCATATGAAAATGAAACTTCAATCTTCCCAATCTTAATACA
AAAGATATGTGCTTTGCATATTCTCATATGAAATGTCTCTGTGAAGTGACTTAGTGAAAGAGAG
AACTGATGCATATATATTTGGTAGTAAAAAAGAATAAAATTCTGGCTAAAGAGAAAGGAGTGCA
TATGAAAATGTCTCCGTGAAGTGACTTAGTGAAAGAGAGAACACATGCATATATTTGCTAGGAA
AAAAGAATAAAATTCTGGCTAAAGAGGAAAAAAACGGTGTTTCATTGTGCACTGAAAGTATTAA
CTAGAATTATTATTAAAAAAAAAAGGAAACTGCAGTTTGGCACATGCACACAAATAGAAAAAGG
ATACACCCCACTCTGAACTCCGGTTCAGAACTGAATTAAACCACAAAACCTCAAATTCTGGCCA
CAGGATTCGCCGCCACAGTATAGAGTCAACCAGTACAGTGAAGCCTAAGAACATTATTCATAGT
GAGAAATGTTTCTTGCAGATTTGCACAGACTTCTGTTAGACTATTGGAGAAAGTTCAAGAAAGT
AGAAAGCAACATACCAATGCATATAATGGCAGTGCTTACACAACATTTGATTGCTTCCAATAGA
GAAATAGACCTGCT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021