Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G65930_circ_g.6 |
ID in PlantcircBase | ath_circ_008857 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 24540107-24540340 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | KNIFE, PcircRNA_finder |
Parent gene | AT1G65930 |
Parent gene annotation |
Isocitrate dehydrogenase |
Parent gene strand | + |
Alternative splicing | AT1G65930_circ_g.2 AT1G65930_circ_g.3 AT1G65930_circ_g.4 AT1G65930_circ_g.5 AT1G65930_circ_g.7 AT1G65930_circ_g.8 AT1G65930_circ_g.9 AT1G65930_circ_g.10 AT1G65930_circ_g.11 AT1G65930_circ_g.12 AT1G65930_circ_g.13 |
Support reads | 5 |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G65930.1:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.346589175 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
24540331-24540337(+) 24540271-24540109(-) |
Potential amino acid sequence |
MTFGTVFREPIICKNVPKLVPGWTKPICIGRHAFGDQYRATDAVIKGPGKLTMTFGTVFREPII CKNVPKLVPGWTKPICIGRHAFGDQYRATDAVIKGPGKLTMTFGTVFREPIICKNVPKLVPGWT KPICIGRHAFGDQYRATDAVIKGPGKLTMTF(+) MPSNADGLCPAWDKLGNIFADNWLSKYSSKGHSQFSWSLDYSISGTVLITKSMPSNADGLCPAW DKLGNIFADNWLSKYSSKGHSQFSWSLDYSISGTVLITKSMPSNADGLCPAWDKLGNIFADNWL SKYSSKGHSQFSWSLDYSISGTVLITKSMPSNADGLCPAWDKLGNIFADNWLSKYS(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |