Detail information of Os05g0422600_circ_ig.5


General Information
CircRNA Name Os05g0422600_circ_ig.5
ID in PlantcircBase osa_circ_027955
Alias NA
Organism Oryza sativa
Position chr5: 20730561-20732189  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os05g0422600_circ_ig.2 Os05g0422600_circ_ig.3 Os05g0422600_circ_ig.4 Os05g0422600_circ_ig.6 Os05g0422600_circ_ig.7
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTCAGTGACAATGTTTTGGAGGTCACGGATAGCTCGCTCAAGTCTGGTACCCTTGGTCTTGGT
ACCTGAACCTTCTGTATGGATTTTTGTGGCCAAGTGcttaggtttggtggctagacgtgctttg
accatttcatagatttccattttcacttgttgcaatttcccagccttctcttgtttagcacata
aacctgat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTAGGTTTGGTGGCTAGACGTGCTTTGACCATTTCATAGATTTCCATTTTCACTTGTTGCAAT
TTCCCAGCCTTCTCTTGTTTAGCACATAAACCTGATTGCACCATTTCTTTCATGTTTCTCTGTG
CCAAAAAACATTTGGTAAGTAAAATCTTTAAAACTCACCAAGTCACCATACAACACAAGGAGAT
TCTTTTTGCCGGTGCCTCTTGGTATGTCTTTTGAATATATGTTCATTTGACAGGATCACTATGC
AACATATATTTATTCTACCACGCTTACTAAAGAGTAACAAAGCCCATGCCTGTCAACACAAACA
AAGGCAAGAACAAATCCTTAGATGCAACACCCCCCCCCCTCCAAAAAAAAAAAAAAAAAAGATT
TCAGCATGCCAACAGGAATCTAGAATCCACTTAGTTGTAGAATATAAGAATAGTTCAAGAAACC
ACATAAAAAGAGTGGAATATTTGTACTGGTGCCCAAGGCCTACGAAAACGATGCATAAAGAACT
GGACAAAAAGAGTGTCTATCTCTTGTTACCTAACTAGCACTCGTTTAAATATCTCAATGAATCT
ACAGGCTACCTTTATCAATGGATGATTAGATCACAACATCCTATGATTTTTTTTTCAATGTTCA
AGAAATAAAGATCATTTCCAGACAGAGATAATAGACGACCCAGAATTGGAAAAGCAACAAAAGA
TACTATCCTTTTAAAAAAAATGAAATGCATGGAAGTAATTGGACAAGAAAATAATCATAATGCA
TGCATAAAAGGTATACATCAAACCAATAATTGTAATAAGCCCCTACCACACTGGACATGAATTT
AATCACTACCTCTACTCACCTTCAGTGTCCTACGGTGCACAAGGTGGCCAACTATGCCCATGAG
GCGATTGATCAGCTCATGTTCTGGTATTTTTCCTTGATTTGCCTGCATTTGTCAATATTCTGCT
GTCATATGTTGCCTAAGAAGTTCAAGTTGCCACTTGCCAGTACTTGTATTAAAAAGTTAGAACA
AAACATTTGCATTGGAATACAGAAAACAAAAGGTTGTACTTCTTCAAGCTTCTCTATTCACATA
ATCTACTGCAGCAGCATAGGAAGTTAATGCATGAATGCATCTCTGTAATCCCTCCTAATAAACA
TAGCGATTACCATGACTCGACACATGCATTCTATATCAAGTTTCAAATCTAACAAATATTGAAC
GGACACAGTTACACTCTAGCCTTAGAAACATTGCTAAGTGGGCCGTAAGTAAACAAAGGCACTT
CACTACAAGGTAAAATAGGGTGTGCTACAACATACCGATAACCTTGCGACCTTAGCAAGTTTTT
GTTTTACTTCTTGTGGCAATCTTCTTTTAACTGCTACCTGGCAATTTGCCTCAGCCTCATGTAC
ATCAAGAATCTGTGGTTTGTCTGTGAGGATGATTCCACGCAACAAAAGCCAAAGTTAATTCCAA
AAGGGGCTTAGAAATATATCCACCATGATATATAAGGTTTAATAATAAGATACACACATTCAGT
GACAATGTTTTGGAGGTCACGGATAGCTCGCTCAAGTCTGGTACCCTTGGTCTTGGTACCTGAA
CCTTCTGTATGGATTTTTGTGGCCAAGTG
Conservation Information
Conserved circRNAs NA
PMCS 0.121519143
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017