Detail information of AT1G09970_circ_g.6


General Information
CircRNA Name AT1G09970_circ_g.6
ID in PlantcircBase ath_circ_001781
Alias 1:3255273-3255410
Organism Arabidpsis thaliana
Position chr1: 3255273-3255410  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT1G09970
Parent gene annotation Leucine-rich receptor-like protein kinase family protein
Parent gene strand +
Alternative splicing AT1G09970_circ_g.5
Support reads 1/1/4
Tissues seedling;root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered AT1G09970.2:1
AT1G09970.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGATGATCGAGGACGCGGAACCTTGCAGATTGATGGGGATTGTGATCAGCAAAGAGAGTGATG
TCAAGatgctgaggattgcgatcatctgcaccgcaagacttcctggactaagaccgacgatgag
gagcgtggtg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATGCTGAGGATTGCGATCATCTGCACCGCAAGACTTCCTGGACTAAGACCGACGATGAGGAGCG
TGGTGCAGATGATCGAGGACGCGGAACCTTGCAGATTGATGGGGATTGTGATCAGCAAAGAGAG
TGATGTCAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.307073981
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020