Detail information of Zm00001d045747_circ_g.1


General Information
CircRNA Name Zm00001d045747_circ_g.1
ID in PlantcircBase zma_circ_009920
Alias Zm09circ00027, ZmciR395
Organism Zea mays
Position chr9: 36888153-36891929  JBrowse»
Reference genome AGPv4.38
Type   e-circRNA
Identification method CIRI2
Parent gene Zm00001d045747
Parent gene annotation DNA topoisomerase type IA core
Parent gene strand +
Alternative splicing Zm00001d045747_circ_g.2
Support reads NA
Tissues leaf, endosperm
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d045747_T002:5
Zm00001d045747_T003:5
Zm00001d045747_T001:4
Zm00001d045747_T004:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCACATAGATAACAGTGTTCATTATACTTGTATTGTTCAGGATAGGAAGTACGTGACAGCAAAA
AGTCGAGTTCTACACCCTGAGTTCCGTGGTCGAATGattcaagtggatgttggcactcctgaag
gagagatgatttttcattcagctgcatcaaagctagacttcaagggataccaatctgtttatga
ggtgagtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTCAAGTGGATGTTGGCACTCCTGAAGGAGAGATGATTTTTCATTCAGCTGCATCAAAGCTAG
ACTTCAAGGGATACCAATCTGTTTATGAGGTGAGTTCTAAATTTATTTTGTACTTGCTTCTTGC
GTCCTATGGATTTTAATTTCTGCTTGTGCTACTTTTATCAAGCTTTGACAAGCCTGATGACATT
TTTGTTGTGTTGAATAATGCATCAACAATATTGTTTGATGGTTCAGGGGCCAATTGTTTCCGCC
ATTACTCCCCTGTTTATGGCAGAAACAATTGGCCCCTGAACTAGGACCAAGCATCTATTTTCAG
TACTTCAACAACTACGAAATAGGACCAAGCATCTATTTTCAGAGAGAGAATAGTGGAGGGCAAA
ATAGAGAGGGCAAAAGCATTTACCCAAAAGGCCAAAACAGATAGGGAGTAGGGAAGCCACTGGG
CTGGGTGCTGCTTCGCCGGCTGCTGCCGGGGACAGTGGGAGGCAGGGGCTTCACTGCCGCTTGA
GAGAAAGGGCGGCCGCCGCCTTAGAGAAAGGGAGGGAGGGCCAGAGGGGAGGTTGTTGGCCGGT
CGGGGCTCTGCGTCGCACCCTGCGTAGTGCCTTGCCGTGACGCCTTGTGCGACGCCGCCATTTC
CTCTGTTTTTGCCCGAGCCTCCTCCAGGTGAGAACACAGGAGGGTGACAGCGTGATGCCTAAGT
CCTAGGTCCAGCCGTCCAGGTCCACTAATTCTGTCATGGGGTGGCAACCCAGAGCTTGGAGGCC
ATAGGGATACACTCAGGGTTAGGATTAGTGGATAAAAATTAGATTAGATTAGATTGAGTTAGTT
ACATGGGATTAGATTAGATTGAGTTAGTTACTTGGGAGCCAAGTCTTCCTACTACATAAGGATG
GGTTGTACCTCCTTAAGGAGAAACCAACCAATCAATGAAGAAGAACTAGTCCCAGATCTCTCTA
ATAATCTAGTCCCCCCCTCCCCCAAGCCAACTCCGCCCGACTATCTTCACGACGCTGTTTATCC
CCCTATGAACTAAGATCCATAACATCTGGTATCATGAGTTAGGGATCCTTTCCCATGACTTCTG
CTGCGGACGATGTACGCACCTGGCGTGAGGAGCTCGCTCGTGCCAGGGCAGATCTGGAGCAGGC
CTGATCCGCTATCGTCCAACTTCGTGATCTACTCGCGGCAAAGGTGGAGTCTAACCGCCTATCA
GCGGCGACAACACGACTGCATGCGACTGCACGTGGCTTCCTGGCGCGACGTCCAATGCTGCAAG
TTACGGCTGCAGATAGCGACTTGCCGCGGCTTCCTGGCGCAACCTCAAGCATGGCAAGCGGCGG
CGCGGCTTGCCGTCTTCAGGCTGCGACACGTGGCTTCCTGGCGCGACTTCAAGCATGGCAAGCG
GCGACGCAGCTACAGGCTATGGTCCGCCGTTCCCTGGCGCAACGACTTGCATCGATATTACGTG
TTGAACAACACGCGACACATAGGGCGGCAAGGCCTTTAGCAGGTTTGGCCGATCCTCCACTCCA
GTTTACCGTCCTGATCCATAGCCATGTGGACTACAAGAACACGTCTGGTTGGGTGGCGCTGTCT
CCACTGGAACTTGCGACAACTCATACTGTAGGACTGGTGAACTGCCACGGCTTGGCCTTTGCAG
CCTGGACGAGGTTGTTACCATGGGATTCAGGGGACGAACCTTGGCATATGTTAGGTTCTTTATT
TTATTTGCAAATAAATTAAAGCCAATATGTAAAAGGCTTCTAGTAGGGTTGCACTTTCACATGA
GTATCAAGTTATACAACAAGGGTGTTGCCATGCACTCCATTACAACTCGAGGACGAGTTGTCTT
CGAAGGGCGGGGGATGTCATAGGGTGGCAGCCCAGAGATGGAGGGCATAGGGATAGACTCAGGG
TTATGATTAGTGGATAAAGATTAGATTAGATAAGATTGAGTTAGTTACTTGGGGGCCAAGTCTT
CCTATCTATATAAGGATGGGTTGTACCTCCTTAAGGAGAAACCAATCAATCAATGACCCCCCCC
CCCAACCCAAACACACACACACACACAAGCCGACTTCACCCGACTATCGCTGTTTATCCCCCTA
TGAACTACGATCCATAACAAATTCCGCCCTAAACCCTATCCTTTGGCCAAGGTGACTCCTAAAG
GACGTCCCATGGGTGCCTTGCGACGCCCGGGCAACGTGACCAGGACGCCTTGTAGGCCAGGCTC
GCCTTACCATTTAAGCGACGCTTAATAACCATTACTAGATCTGTATCTGTTCAACATTTCTTGA
AGTGGTTACATGGAAAGGGTGATGTCCGGTCCCACTTGGTCTCCTCTATGCACTACAACACATT
GTTATTGTTGTGTAGAACATAATTTGTGGTATTGTATGGCCTTGTAATGTTTTTTTTTTGATAA
ATTTCTTTATGGAGTTTACTTTCTTTTCCCTTGGGACATAACCTTCCTGTTGCCGAAATGCATG
AGTTTTTCCTGATTCATTTGTATTCTTGGTTTCTTGTGTTGTGGATTGAGCTTCTTTTAGTGCT
AATGGTAAGGACAACTTAAGCTTGAATGGAAGCATGGTTGTCAGTTGCATTTTGTGAAGAACTT
TGTGCTAGCTTTTCAGTTTTACGAACTTATTCTTACTCATTAACAATACACTTTGCTACTTTTA
GGACACTGAGGGAGATTCTGTGCATGAGGATAACTTTGAGGCCTTGTCAAAATTAATGGTTGCG
GTGACAATTCTCTTTCTTTATCCTCTTTCTTTCTCAGGCTACTGCAGATTATTGGTTATCATTC
AACTGTTCCAGTATGTAATTCATCTCCTTTTTACCAGGTTAAGGACTTGGTGTCCCCTGTTAAC
GTGCATCTTGGACAGCACTTTACTAAGCCACCATCACGTTATTCTGAGGGTGCATTGGTAAGCA
ATAACCTACCATGGATTATTTTTCACTTGTTTGCTTTGAGCATTGCCCATTTTTGCAATAAAAT
ATTATTTATTTTTATTTGGTTATACTAGTTCAGATTTTCATATTCAGCTTTGTTATCTCCAGAT
TAAAAAGCTAGAAGAACTTGGAATTGGAAGGCCATCTACTTATGCATCTATAATGAAAGTATTA
CAGGTAACATAGCATTTTACTTCCGAACTATTTTTTACTATGGTACTGGAAGACTATTTGCGGA
TGCATAAAGCATAGTTGATAGCCTTTCCTAGTGTATAATTTTTTGTCCTTGTGCCCCCATCTAG
GGGTTGTTGTTAGACAGATGTTAGGCTCACACGGTTGTGCCCTTTGGGCTGATGGCTATAGGGG
TTGTGCCTCTTGTATATTTGTTAAGATTGATCCTATTTCTATAAACCGACCCATGGGAATCCTT
GCCTGTATATGCGTGTACCCTGCACCTCCTCTAATCATTGTCACCGTTCAGAAGCCATATCTTA
TCTTACAATTGTGTTAGTCATGTAAGGCTTGCTGTGTTTTTCGGTTTTGTATGTAAGGTTGGCA
TTGGGCATGGTTATTGCACTTGGCTATTTTAGCCTTCCTCACCTCATAATGCAATGATACAGAG
ATCTCATGCTTATTTGAGGAAAACAGTTGCAGGGTTTCAGATTGCTATGTATTAAATCTTATTT
TCATCTGTTCTAGTTTGCATCGACCTGTTCCACATAGATAACAGTGTTCATTATACTTGTATTG
TTCAGGATAGGAAGTACGTGACAGCAAAAAGTCGAGTTCTACACCCTGAGTTCCGTGGTCGAAT
G
Conservation Information
Conserved circRNAs NA
PMCS 0.097862439
Functional Information
Coding potential Y
Potential coding position 36888187-36891926(+)
36888199-36891905(-)
36888209-36891274(-)
Potential amino acid sequence MIFHSAASKLDFKGYQSVYEDTEGDSVHEDNFEALSKLMVAVKDLVSPVNVHLGQHFTKPPSRY
SEGALIKKLEELGIGRPSTYASIMKVLQDRKYVTAKSRVLHPEFRGRMIQVDVGTPEGEMIFHS
AASKLDFKGYQSVYEDTEGDSVHEDNFEALSKLMVAVKDLVSPVNVHLGQHFTKPPSRYSEGAL
IKKLEELGIGRPSTYASIMKVLQDRKYVTAKSRVLHPEFRGRMIQVDVGTPEGEMIFHSAASKL
DFKGYQSVYEDTEGDSVHEDNFEALSKLMVAVKDLVSPVNVHLGQHFTKPPSRYSEGALIKKLE
ELGIGRPSTYASIMKVLQDRKYVTAKSRVLHPEFRGRMIQVDVGTPEGEMIFHSAASKLDFKGY
QSVYEDTEGDSVHEDNFEALSKLMVAVKDLVSPVNVHLGQHFTKPPSRYSEGALIKKLEELGIG
RPSTYASIMKVLQDRKYVTAKSRVLHPEFRGRM(+)
MKNHLSFRSANIHLNHSTTELRV*(-)
MQLNEKSSLLQECQHPLESFDHGTQGVELDFLLSRTSYPVILSL*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Han et al., 2020;Zhang et al., 2019