Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d045747_circ_g.1 |
ID in PlantcircBase | zma_circ_009920 |
Alias | Zm09circ00027, ZmciR395 |
Organism | Zea mays |
Position | chr9: 36888153-36891929 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d045747 |
Parent gene annotation |
DNA topoisomerase type IA core |
Parent gene strand | + |
Alternative splicing | Zm00001d045747_circ_g.2 |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d045747_T002:5 Zm00001d045747_T003:5 Zm00001d045747_T001:4 Zm00001d045747_T004:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.097862439 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
36888187-36891926(+) 36888199-36891905(-) 36888209-36891274(-) |
Potential amino acid sequence |
MIFHSAASKLDFKGYQSVYEDTEGDSVHEDNFEALSKLMVAVKDLVSPVNVHLGQHFTKPPSRY SEGALIKKLEELGIGRPSTYASIMKVLQDRKYVTAKSRVLHPEFRGRMIQVDVGTPEGEMIFHS AASKLDFKGYQSVYEDTEGDSVHEDNFEALSKLMVAVKDLVSPVNVHLGQHFTKPPSRYSEGAL IKKLEELGIGRPSTYASIMKVLQDRKYVTAKSRVLHPEFRGRMIQVDVGTPEGEMIFHSAASKL DFKGYQSVYEDTEGDSVHEDNFEALSKLMVAVKDLVSPVNVHLGQHFTKPPSRYSEGALIKKLE ELGIGRPSTYASIMKVLQDRKYVTAKSRVLHPEFRGRMIQVDVGTPEGEMIFHSAASKLDFKGY QSVYEDTEGDSVHEDNFEALSKLMVAVKDLVSPVNVHLGQHFTKPPSRYSEGALIKKLEELGIG RPSTYASIMKVLQDRKYVTAKSRVLHPEFRGRM(+) MKNHLSFRSANIHLNHSTTELRV*(-) MQLNEKSSLLQECQHPLESFDHGTQGVELDFLLSRTSYPVILSL*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Han et al., 2020;Zhang et al., 2019 |