Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G15240_circ_g.9 |
ID in PlantcircBase | ath_circ_002664 |
Alias | Ath_circ_FC0357, Ath_circ_FC0358, AT1G15240_C1 |
Organism | Arabidpsis thaliana |
Position | chr1: 5247073-5247487 JBrowse» |
Reference genome | TAIR10.38 |
Type | u-circRNA |
Identification method | PcircRNA_finder, CIRI2 |
Parent gene | AT1G15240 |
Parent gene annotation |
Phox (PX) domain-containing protein |
Parent gene strand | + |
Alternative splicing | AT1G15240_circ_g.10 |
Support reads | 1 |
Tissues | whole_plant, leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G15240.3:2 AT1G15240.2:2 AT1G15240.1:2 AT1G15240.4:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.173926506 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
5247245-5247484(+) |
Potential amino acid sequence |
MTQAAPGPLPRRENLSSENGISGQNMRNNVMVDDVKSKVKNLGNDHVKTPDVDVRNRKENGGLK VGTQHADDVACAGLPTETYAFSSSFSIIETLTVKPVNKTSTVATNIASMTQAAPGPLPRRENLS SENGISGQNMRNNVMVDDVKSKVKNLGNDHVKTPDVDVRNRKENGGLKVGTQHADDVACAGLPT ETYAFSSSFSIIETLTVKPVNKTSTVATNIASMTQAAPGPLPRRENLSSENGISGQNMRNNVMV DDVKSKVKNLGNDHVKTPDVDVRNRKENGGLKVGTQHADDVACAGLPTETYAFSSSFSIIETLT VKPVNKTSTVATNIASMTQAAPGPLPRRENLSSENGISGQNMRNNVMVDDVKSKVKNLGNDHVK TPDVDVRNRKENGGLKVGTQHADDVACAGLPTE(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | response to drought stress |
Other Information | |
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References | Chu et al., 2017;Chen et al., 2017a;Zhang et al., 2019 |