Detail information of Os04g0608100_circ_g.2


General Information
CircRNA Name Os04g0608100_circ_g.2
ID in PlantcircBase osa_circ_025133
Alias NA
Organism Oryza sativa
Position chr4: 30766222-30769406  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os04g0608100
Parent gene annotation Ribosomal protein S5 domain 2-type fold domain containing protei
n. (Os04t0608100-01);Similar to OSIGBa0113I13.15 protein. (Os04t
0608100-02)
Parent gene strand -
Alternative splicing Os04g0608100_circ_g.3 Os04g0608100_circ_g.4 Os04g0608100_circ_g.5
Support reads 2
Tissues shoot, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0608100-01:8
Os04t0608100-02:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGCCCCCAGAGGGCAAATCCTGTAGGGGCAAGCAACCACCCTGACCTCTCCTGCACCCCTTCC
ACTAATCTCCACTACCTTTGCTCGAACAACATCAAGcataaaagagcacgggcagcctctttgc
actcaaaaactcgcgtattatatccactcttcttcggtaggttatgttgcagccctgaaaaggc
taacaaaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 761
Transcript exons: 30766222-30766397,30766693-30766792,30767017-30767096,30
767442-30767507,30767584-30767692,30767957-30768000,3076
8266-30768337,30769293-30769406
CATAAAAGAGCACGGGCAGCCTCTTTGCACTCAAAAACTCGCGTATTATATCCACTCTTCTTCG
GTAGGTTATGTTGCAGCCCTGAAAAGGCTAACAAAATCTTGAATGGTAGTTCTCCTTGACATTG
CTGACTTTTACTCAACACTGAGAAGTAGACGTAGGAATGTGTGGCGGTCTTGCAGTCCATGAAG
GTGAGATAGCCATACCGTGAGAGCAAAATAGCTGATGGATCCAGAATACCATTTTCAAGACCCA
AATATTTATTTTCGATGGACTTGTCCAACTGAATGTTGTCCACTGGTGATACAACCAGATCATT
CACATTTTCTAAAGCCATCAAATAGGCAATCCCGACTGCTGCAGATGAACTGAGCCCTGAACTG
TCAAGTCCTTTCACACCAGAAATATATCCTATAATACCCTTCTTGAGATCATATCCAAAATTTT
GCAGGGCATAAACAGCACCTCTTGCATAGCTCTCCCAGTTTATGTTTTCTGGGTTTTCAATGGG
CTTTTGCAAGTCATCAACTCTGAATCGTATCACACCTTCGAATTGACCAGATTGGAGTGAAATC
TCGGCATCATCAGAGGCCACAAAACCGAGAAGTACACCATAATTAATGGTCATAGCTGTGACAG
TTCCACCCTGATGATCGATGTGAGCCCCCAGAGGGCAAATCCTGTAGGGGCAAGCAACCACCCT
GACCTCTCCTGCACCCCTTCCACTAATCTCCACTACCTTTGCTCGAACAACATCAAG

Genomic sequence CATAAAAGAGCACGGGCAGCCTCTTTGCACTCAAAAACTCGCGTATTATATCCACTCTTCTTCG
GTAGGTTATGTTGCAGCCCTGAAAAGGCTAACAAAATCTTGAATGGTAGTTCTCCTTGACATTG
CTGACTTTTACTCAACACTGAGAAGTAGACGTAGGAATGTGTGGCGGTCTACTCAAGCAAAGAG
AGTCTCAGTCACTATAAATGCTAACAGAGAGCATTGAAGTGCACATTTTCTAAAACTATGCGCA
ATGAAACCACAAAACAAAGAAAGAATTGTCGAGAAGGATTGAAATAATTATATGGACCCAATGC
AATATCATAAAAAATGAACTTGTGTGAATAAAAAAAAGCCTTTTTTACAGAAAAAATGATATAC
CAGTCTCAAAACTTTGAAAAAACAGAAGTCATACTGAATATATTACTAAAATAGTAGACTTTCA
GAAAATACAAGGGAAAGTACTACCTTGCAGTCCATGAAGGTGAGATAGCCATACCGTGAGAGCA
AAATAGCTGATGGATCCAGAATACCATTTTCAAGACCCAAATATTTATTTTCGATGGACCTGAC
AAATAGGGATATGAAATTAAGAACTCTGCTAGTGACCATGACTCAATGAGCTAATAAATCTTAT
GTAGCAATATTTGATTGTTGCTTTAGAACATGGCAATAGTAGATAGTTGTGGGGACTTCAACAT
AGATACTTGAAATTAGAACTGTTCTGGATCCCATGTATGAATTCATAATGTTAGTCCACATGGA
ATGCTTACTAAAAGGAAACAAACTCACTTGTCCAACTGAATGTTGTCCACTGGTGATACAACCA
GATCATTCACATTTTCTAAAGCCATCAAATAGGCAATCCCGACCTGATGAGGAGCATACAGAAA
TAGGCATTTGATGATCACATAACTAACCAAAGTATCAATTATATTAATAATTCTTTTGAGAACC
TAGAGTAAGAACTGGAAGTTTCTGTCCTTGTTATGGTGAGCTGAAGGTTTAGAAGATACTAGTA
CAAAGTTAGTAGCTTCACAAATTTGCTTTGAACTCCAAGTCAAATGTGAGCCAAGTATATGTCA
TGATTATGAAATACTGCATATTCGATTCACAACTAGGTTGGCACTAAACTCATATTTCCAGTTT
TCTACATATTACAGATGATTGTGCCAGCAATTTTAACTCAAATATACATGACATATCAGTTAGC
TTACTGCTGCAGATGAACTGAGCCCTGAACTGTCAAGTCCTTTCACACCAGAAATATATCCTAT
AATACCCTACAAGAAGTCATCTGTCAATATTATTTAAAGCATAAGATATTCTGGACTTTGAATT
ATTAAATGTAAAAGTCACCTTCTTGAGATCATATCCAAAATTTTGCAGGGCATAAACAGCACCT
CTTGCATAGCTCTCCCAGTTTATGTTTTCTGGGTTTTCAATGGGCTTTTGCAAGTCATCAACTC
TGTTGAAGTGGTGAAACACGTAAACGAGTGTCGTCTAATTTAACAAAGCGAGGATTTAGTGATG
GAAACACAGCTATAACAAAAAGGGTGAACAGAACAATGAGAAATAGGTGAGGCAGCACGTCTAT
TGGAAAAAAAAAAAAGGCTAACAGAGATTTGAAAAAAAAAGTGCATTTTGTCAAAGTTGCGCAT
GGATGAATCAGCTGGCTATGCTATTTGATGTTAACCAAGAACACCAAAACATGGTGCAACCGCA
AACATACCTGAATCGTATCACACCTTCGAATTGACCAGATTGGAGTGAAATCTGTAAAACAAAC
CAGAGGATTACCAGTGTTATATATAAGCATATTTTTTTATGACAGGATGGATAATGTGAGTGAG
TCAGCGTGTAGAAATTATCATTTGAATGGAGACAATATGTTCTGATTGATGTATATTCAGAAAA
GGTAGGAGAAAGAAAGGGGAAAAGGGGCAATTAAGGGAGGATGGTATGTTATTTTGGCACAAAG
AACTTAACTTGGAATTTCAGGGGAGCATACAGATAAAAGTGTTTAAGCACAATAACTCACCTCG
GCATCATCAGAGGCCACAAAACCGAGAAGTACACCATAATTAATGGTCATAGCTGTGACAGTTC
CACCCTGCCGTAATGCAGAACAGAATAGAAGTTAGCCAACCACCATATCCCTTGCAGAGGTTCT
TTTGAATTGAAGTCAACCCATGATATTTGTAACAATAAGGTGTTCATGGGAACACATTTCCATA
AATACCCAACTAATATAGCTCTCCTTGAAGTGAATTATTTAACATTAGAGGGTATCCAGCAATT
TTTGAAATGATAAAACTAATTCATTACCTTAGGTAGAGTATAACCTAAGGTAGATACCGCCAAC
AACAGGTTAAGAACTGGTAAAAAAAATAGTTACTGCAAGGATGTTTGTGTTGATTCTAGTCAGT
TAGAGATGGTGATGATCCAATATACAGAACTTTTCTCTTACTGCTGACTGATTTAATATGTTAT
GACCTGAAAATTTATTCCCACGAAACTAAGTAAATTAGCAGTTTATGCAACTTCCACCCTTTTA
AAGAATTACTACGTGTGCTGCTCAGAAATAAAGAGAAATTGAATTCCACCAATATTGATGGATC
TGCTTTGTAACTCAAATAAACTCAGGTTTACAGACTTAATCCAAAGACTCTCCAAATACAAACC
CAAGTGGGAGCTTTATTCTATTTGTAGGAAAAATCACCACCACTATGCTAGTGCTAATATATTT
CCAACATTTGCAGAGGAAAATTCTTATAGCTAGGTTTATTGTCAAGTACTTAACACTCCCCCTG
AAAATCATCAAGGTCTCATCAACTCATTCCACACATGTATAGAACAGTCCAATTATGTCACATT
TATGCGGCGACGATATGACATTAAAGCACATGCCATTTATGCTACATTGCTGCCTGACTATACA
CATATACAAATTTAATATAAGAACACATTAAAATAATTTGCAAACATACAGTTTATACAACAGT
CTTAACAGTGGGTCACTCTTCTGAAAAATGAAAACATCAAGGACATAATATCTACAAAGTTACC
TGATGATCGATGTGAGCCCCCAGAGGGCAAATCCTGTAGGGGCAAGCAACCACCCTGACCTCTC
CTGCACCCCTTCCACTAATCTCCACTACCTTTGCTCGAACAACATCAAG
Conservation Information
Conserved circRNAs osi_circ_005708*
PMCS 0.239883864
Functional Information
Coding potential Y
Potential coding position 30769297-30766341(+)
30768321-30769384(-)
30766226-30769384(-)
Potential amino acid sequence MIDVSPQRANPVGASNHPDLSCTPSTNLHYLCSNNIKHKRARAASLHSKTRVLYPLFFGRLCCS
PEKANKILNGSSP*(+)
MTINYGVLLGFVASDDAEISLQSGQFEGVIRFRVDDLQKPIENPENINWESYARGAVYALQNFG
YDLKKGIIGYISGVKGLDSSGLSSSAAVGIAYLMALENVNDLVVSPVDNIQLDKSIENKYLGLE
NGILDPSAILLSRYGYLTFMDCKTATHSYVYFSVLSKSQQCQGELPFKILLAFSGLQHNLPKKS
GYNTRVFECKEAARALLCLMLFEQR*(-)
MLDVVRAKVVEISGRGAGEVRVVACPYRICPLGAHIDHQGGTVTAMTINYGVLLGFVASDDAEI
SLQSGQFEGVIRFRVDDLQKPIENPENINWESYARGAVYALQNFGYDLKKGIIGYISGVKGLDS
SGLSSSAAVGIAYLMALENVNDLVVSPVDNIQLDKSIENKYLGLENGILDPSAILLSRYGYLTF
MDCKTATHSYVYFSVLSKSQQCQGELPFKILLAFSGLQHNLPKKSGYNTRVFECKEAARALLCL
MLFEQR*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017