Detail information of BGIOSGA011971_circ_g.2


General Information
CircRNA Name BGIOSGA011971_circ_g.2
ID in PlantcircBase osi_circ_000350
Alias NA
Organism Oryza sativa ssp. indica
Position chr3: 4501965-4502511  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method DCC
Parent gene BGIOSGA011971
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA011970_circ_ig.1 BGIOSGA011970_circ_ig.2 BGIOSGA011971_circ_g.1 BGIOSGA011971_circ_g.3 BGIOSGA011344_circ_ig.1
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   GA-TG
Number of exons covered BGIOSGA011971-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATATGGTGTTTATAATATGTTTCATACCATTTGTAGTTAGTAATGTATTTGTATGCTGGTGCCT
GCCCCTGATTTGTTCGCCTATTTTCTGTTACAGATGatgagcaacttctgctatattcagttgg
aaattggaaatgaacatattcgtgatgctagtcctgaatactgttgattacatcaatgaagtag
cattttct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATGAGCAACTTCTGCTATATTCAGTTGGAAATTGGAAATGAACATATTCGTGATGCTAGTCCTG
AATACTGTTGATTACATCAATGAAGTAGCATTTTCTTTTATTGATTTATCCCTCTGTGCTAGTT
TTTCTGACTGTCTACCTTCTATGCATCTAAGACTGCAATTTACCATGCATCTAAGGCTGCTATT
GTTGATTGTTGCTTTTGTTATGACTGTCTGTCTTTATGATGCATCTAAGATTGTAATTGTTGTT
GGTTGCTTTCCTGCTACTACTAGCTTTAGTAATTTACTGCTGCAAGAAACTATACATATCTTAC
TGTTAGATTTGGTTAAGTTCATTTAGATATCGTGCTGTATGTTACTTTATACTAGACTTGTATT
GATGTTGCTGTCCACCTGTATTTCATTACATATTGGTTGCTATTATTTCATTTTTTGTATCTTA
TATGGTGTTTATAATATGTTTCATACCATTTGTAGTTAGTAATGTATTTGTATGCTGGTGCCTG
CCCCTGATTTGTTCGCCTATTTTCTGTTACAGATG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Guria et al., 2019