Detail information of Zm00001d048529_circ_g.2


General Information
CircRNA Name Zm00001d048529_circ_g.2
ID in PlantcircBase zma_circ_010117
Alias zma_circ_0003145
Organism Zea mays
Position chr9: 157917454-157917618  JBrowse»
Reference genome AGPv4.38
Type   i-circRNA
Identification method find_circ
Parent gene Zm00001d048529
Parent gene annotation Developmentally-regulated GTP-binding protein 2
Parent gene strand -
Alternative splicing Zm00001d048529_circ_g.1
Support reads NA
Tissues leaf, root
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTAGGAATATAAATATCTATGGCAATATACTATTTTAAATAGAATAGTTCTCTAGTATAAAAGT
GTTTTTACAATGAATCTAttatgtcaatcttatgttgtaaatccaaatacaagtcccttgaaac
aacaccgtggtccgtgacctccaatatgacccttgaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTATGTCAATCTTATGTTGTAAATCCAAATACAAGTCCCTTGAAACAACACCGTGGTCCGTGAC
CTCCAATATGACCCTTGAACTAGGAATATAAATATCTATGGCAATATACTATTTTAAATAGAAT
AGTTCTCTAGTATAAAAGTGTTTTTACAATGAATCTA
Conservation Information
Conserved circRNAs NA
PMCS 0.151563283
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b