Detail information of BGIOSGA003249_circ_ig.1


General Information
CircRNA Name BGIOSGA003249_circ_ig.1
ID in PlantcircBase osi_circ_008915
Alias Chr01:9865610_9870374(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 10601509-10606273  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA001902_circ_igg.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCGTGGCTGACGACCGCGCCCATGGCGGTGGCGGCGCGCTTGCGATTTGGGGGGAGGCGGCGGC
GGCGGCGGAGCGAGAGAGGGGGTAGGTCGGATGCGTgttctgtcgacaaatgccaactgctata
atcgtacatgcgtctccgaagaaaccgccgacactgcctcactctccaagaaccataccaaacc
caaatttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTCTGTCGACAAATGCCAACTGCTATAATCGTACATGCGTCTCCGAAGAAACCGCCGACACTG
CCTCACTCTCCAAGAACCATACCAAACCCAAATTTGTAATCTTTCTTCCAGTGATCAAGCTGCA
CAGGATTGTAGAAACAACATCATGTCAATTCAAAATTATACTCCAAATACAACTAAATGCAGGG
CACGATAAAATTCACCTATGATGGCTAGATATGCTTCTCAAATGCTAAGTTCTGCTGCCTACGA
AAGCTGATATCTTGGAATTTCAAGCATCTGAGATGGCTAGGATTTTGAAGGCGTGTAATTTTCT
TTACCTTTTGCTATTATTTTATTATTCAGCGCAGCTCACTAAGGAAACATCTATATTTCATTAA
TTTACGTTTCTACTTGACCTTCTGATTCAATAATCCAGTTCCAGACTTGGTTTCCCACTTACAT
AAACGTGTTAAAAATAGAGGGCATTGAATCAGTAATAGGTAGCCTGGTGTATAGAATAAGTAGG
GCTGCAAGCTGACCTCTGCAGAAAGAACGAAATTCACGCCGGGGGTCAACCGCTCCTCCAAAAG
AGCAGAAACAACGCCATTGGTATCAATCTTCCCCCTCAGACGACACTGCAAGGTTAAACATAAA
TATACTTTAATTTAATGAGGTGGTTACAACTTCAATAATCAAAATTCTCTAAAAACATAGAATT
TTCCATTTTTGAAAAAAAAAAGGTTCCATAGAAGAGGCAAAATATGCTCAAGTTGTTGCAGCAA
CTTTTACATCCCACATACCATGCTAGACCAACACACAAAAAAAAAAAAAACCGAAAAGGTGGAA
ACAATCAAGATATACCTGTCTCAACATATAATCATAGCCAAAACTTGCTGTTACATCCTTCGCC
ATATGATTGTACATAAAATCAGATGCAAGGGAAACCTGCAAGAAGAAACTTATAGAGTAAGATG
GTATAAAGAAAATAAAAGCAAATGTTCAAAACATCATTACAGAACACCGACCTTTTCTGATACT
TTTTGGACGTAACTGAGTGAAACCAATCCAGTGGTTGCAATTTGTCCAGTTGCAACCTGCACAT
ATATGTTACATGTCTCCATTAATTATACAAATTTAATGTCAAGTTGACCATCCAGCTACCAATT
AAGTAACCAATATGAATTCTAATGTCTCTTACAATTCAATGAACGAAAAAAAGGGTCAATTCAA
TATTTCAACAATGTCTCAAAAAACCACTACCAGTTTACTAATCATATGAAAGAGCCATCTGAGC
TCATACAATACAATTCATGGTTTGTATTTACATCTGGTAGAACATTTATCACTAATGCATGCTT
ATTGCACAAGAAATTAAAAATACAATGCTTGCAGTTAGTTTAGATTCAACAATGGGAGGCACTA
GGGATGTAATAATAGAGTTTGTGAGAGGCAGCAAACTTGAAGAGAAAACAAAAGGCTGGCTGTC
AGGATTATAAATTGCAAATAGTCCGATTCATATACATGTATGAACTTGTGCATGCTATTTTGAC
TATTTGCTTACACGATATTACAAACAATTGTGGAAGTGCTAACTAACACCCCAGAGGTATTGAC
CTGTTGCCATGACTGCAAACGCGCTCTCATGACTAAGCCCCCCAAAGTAGTAATTAAGCAAATG
CGTCCCCATGACTATATGGCTGAGCGCTAGAACAGCGCTTAGAAATCTATCCTATAAAACCTTG
AACGTAGCCTTTTGAGGCCGTGGGCATTAGTTACATGGTAAATGAATGGTAACCTAACAACTTC
ACATGGGTGGACACTGTAATCATGATTCTTAAATAGCTTAAAGATAGGTAAACAAACTTACCAT
TTTCTTTGTGTCATATCGAGCAACAAAGCCAACTCCTGATTTTCTTTGTTGCCCAAGCCAGAAA
GCTTCAGTTCCCAAGGAGAGGTTCTTAGTTACACTCTGAAACACACAAAAATATTAGTTTAATA
TATATGTTAGAATAAAAACATATTCTCTGCAACTCAATTCATGCAGTTAAATCAGGCATTTTCT
TTTGGATCATGACCCTAACAAAAAAAGTGAACCGTTTAATCACTTTTATCCTCCAGTTTAATCA
ACAGAATCACATGGCAAACACCACAAAGTTACTTAAGAGATTTCTGGAGTTATATTCTTATGCT
TATTGTACAAAGAAGCTACCACGGCACATTGTTTTTGAAATATGTTTGTCTTCTCTTAGCATTA
TTACTTCCTCTCTCCCAGTTTAGTGGGCGTATTTTTTTTTTTGGTTGTTGTTGATGTACCAAAA
CACAGGACACACTGGGGCTTTCAGCCAAGAGTGCTCTGCTACATGCATGCATGCAAGCGAGGAG
GTGCTGGCCACATAATTGGTGCATGCAGTGTGGCGCCATTTTAATTGGCTTATCCGTTTCATGC
ATGAGGAAACGGAGCGCTTCAATTTACTAGAATTTGGTGGCTTGGTGCTTTGTTTACATGCATT
GTCTGCTTAATAGGGGCAGATCAGGAAGAAAATATATTGCATGCAAGGGCCTTAGCGAAATATT
TTACACACCCTGTAAATGGGGACAGAGGGAGTACTTCGTCTAGGTAAATTTTAAGTTGAGAAAA
GGAAAAGGGAAAAAAAGCTGTCTAGTCATTACATCATATTAACAAGAACTGTCTTCATAGCAGC
TGTCTATGCACTTACACAAGAATCTAAAATGTAGAAAATCCTCAAAGGGAATGGTTATTATATG
CAAACACATAAACACATACCTGGATGTAGTTCCCTCCATAGAAGGCATTATTCCCAAGTTGGAA
CTGTGATCTAAAATCTTTGCCCTGCAATCAAAGATATAAAAGCAACACAAGTTATAAAATAAAG
TACACCTTCAGATATAATTGATAGGAAGAAACTAAATAAAAGATATATCTATCTGGAATACACT
ATATCTCAAATACACCCCTTTACACTTGCGAGAAATTTAAATAGGAAACAACACAAAGTTTCAT
GGAAAGAAAAAGTTTCTTGCATTGGCCATTCCCAGTAGTATTCTTCAGAACTAGATATTATGGA
AAAGGAAGGGGTAAAACTGGGAGGAAAGGGAACAAAAGAAAACTACGGAAATTATGTGTTGTTG
AGAACTCCTAAGAAATGCATCACTACATCAACAAACACGTCTATCAAATTAACAAACTAGTAAA
AATTAGGGGCACGTTTCAGAGTGTGCATTCCATCTTCACATTCTTGATGTTTTCGATTGAAATT
AAAGATACATGACAATAGGAATTTATTTGGAATGCAAAGTAATTGTAGGAAACAGACTGAAAAT
GAGCTATAACGCATTTCATTAAATCAGCCATAACTTTCCTTTGAAACTAAATTGTTCAGCATCT
GCTAAGAAAGAGTCATCTGTTAATGATTCATGAGATGCATTATGAAAATACTACGAAAGTTTCG
ATGCCATCTCTTTTCTTAAAATCGTTCGGCAAGATAACAGGCTTTATGTTGTCCTAAGTGGAAA
TTTAAAAGATGCCAGAAAAAACAATCATATCTTCCATTATTCCATCATTTTAATAAAAAAAATA
GCAACAATATAGGACACACTTTCATTAAGTGAGAAGGATTCTATACCAAAACACAGTAGCTTGT
TGAAGAAAAGAAAAAAAAATGTATCGCTGGAATGGCATTGCCATCAAATAAATTTACCAAACTA
GGAAAACCCATCATCACAAATCCAAATGTACACAAAGACTGACCTTATAATCAAAGCTAAACAT
GCCTTGGGAGTAATGGGGCTCGTTCGTCAACTGCCAGGATACATACAAGGTAAGCTAATTAGTA
AGTACAAAAGGATGGTGTTAATTAGCGCTAATCTCATATTGAACACAGTTTGGCTCATATGGTT
CCAAACAAAAAACCTGAGCATTTATCTTGAGGCAAAGATTTTCCAATAGATCGCACTTAACGCG
CGCGGTCACCCTCCCGTCGTGCGAAACCCTCCCAATGAGCATCATCTGGCAAATGAACCACACT
CGGATCAACACTGAAACCAACCATATTAGAACACCAAGCATGAACCCCTTCACAGAAGAAAAGC
ATTGCAAACCTTGGGATCCATAAAGTTTGCGCCGAACTCGTAGTTGGAGGTGGGGACCTTGATC
ACATCCGCCCCCTGCGATGGGAGCTCCATGGATCCCATGGACACACTGAGGCGCACAAGGATTG
TCACGATACAGCCAAAACCGCTAGTAATAATTTACAAAGGGAAAAAAACGAGACTAGATGATGG
GGGGAACCGGAAGTCGAACCTGTGGCTCAATCCGAAGAACGGGTTGAGCATCTTGGTGAAATCG
AAGCGCAATCCCTCGAAGACATCGGGCTTCAGCGACACTGCAGCGAGAGAGGATCACACGGCGT
CACCACCGAATCAACAACCACCACCAGATCAAGGGGGGGATGCAAAGGGAGGCGGGGGCGGGGG
GCGGAGGCTTACTGAAGGCCTCGCGCTGGATCTCCTCGTAGGGGACGGGGCAGGGGAGGTTCAT
GTAGTCCACCTTCTCCTCGTCGGCCGCCGCGTCCTTCTCCGCCGGTGGCGGCGCCGCCGCGGCC
GCGGGGTCCACGAAGGGCGCGTAGCCCGTGGGTGGGGGAGGCGGGGCCGCGGCGGAGGCGTGGC
TGACGACCGCGCCCATGGCGGTGGCGGCGCGCTTGCGATTTGGGGGGAGGCGGCGGCGGCGGCG
GAGCGAGAGAGGGGGTAGGTCGGATGCGT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021