Detail information of AT2G40430_circ_g.11


General Information
CircRNA Name AT2G40430_circ_g.11
ID in PlantcircBase ath_circ_017632
Alias NA
Organism Arabidpsis thaliana
Position chr2: 16881661-16881965  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT2G40430
Parent gene annotation P60-like (InterPro:IPR011687), Tumour suppressor protein Gltscr2
(InterPro:IPR011211)
Parent gene strand -
Alternative splicing AT2G40430_circ_g.1 AT2G40430_circ_g.2 AT2G40430_circ_g.3 AT2G40430_circ_g.4 AT2G40430_circ_g.5 AT2G40430_circ_g.6 AT2G40430_circ_g.7 AT2G40430_circ_g.8 AT2G40430_circ_g.9 AT2G40430_circ_g.10
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G40430.1:2
AT2G40430.3:1
AT2G40430.2:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAGATGGCACTAACTGGACAAATGGATTCTTCTTTAAGATACTGTCAACACGGAGCACTCTCT
CTCTATGTTTCTCAATCTTTCGCTTCACCGGAAGGTctttactatcatcaccccacaagtcggc
cattacagaatcgtcaccaacactctgcaaagaaaggagaaatcatatgaaatcagatccctga
aatatctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTACTATCATCACCCCACAAGTCGGCCATTACAGAATCGTCACCAACACTCTGCAAAGAAAG
GAGAAATCATATGAAATCAGATCCCTGAAATATCTTATAGATGTAAGAAATCATATCATCAAAT
GACTCACTTTTTGAACTTGTTTAGGTGCTTTGTCTTCTATAACGATTGTCTTCTTACTTTTCTT
CAACTTTGGCTTTGAAGATGGCACTAACTGGACAAATGGATTCTTCTTTAAGATACTGTCAACA
CGGAGCACTCTCTCTCTATGTTTCTCAATCTTTCGCTTCACCGGAAGGT
Conservation Information
Conserved circRNAs NA
PMCS 0.121328989
Functional Information
Coding potential Y
Potential coding position 16881692-16881663(-)
Potential amino acid sequence MADLWGDDSKDLPVKRKIEKHRERVLRVDSILKKNPFVQLVPSSKPKLKKSKKTIVIEDKAPKQ
VQKSVGDDSVMADLWGDDSKDLPVKRKIEKHRERVLRVDSILKKNPFVQLVPSSKPKLKKSKKT
IVIEDKAPKQVQKSVGDDSVMADLWGDDSKDLPVKRKIEKHRERVLRVDSILKKNPFVQLVPSS
KPKLKKSKKTIVIEDKAPKQVQKSVGDDSVMADLWGDDSK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017