Detail information of Os01g0667700_circ_g.2


General Information
CircRNA Name Os01g0667700_circ_g.2
ID in PlantcircBase osa_circ_003157
Alias Os01circ19604
Organism Oryza sativa
Position chr1: 27306018-27307467  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer, SMALT, Segemehl
Parent gene Os01g0667700
Parent gene annotation Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01
t0667700-01);Similar to RING-finger protein like. (Os01t0667700-
02);Similar to RING-finger protein like. (Os01t0667700-03);Zinc
finger, RING/FYVE/PHD-type domain containing protein. (Os01t0667
700-04)
Parent gene strand -
Alternative splicing Os01g0667700_circ_g.1 Os01g0667700_circ_g.3
Support reads 3/1
Tissues panicle/shoot, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os01t0667700-02:2
Os01t0667700-03:1
Os01t0667700-04:2
Os01t0667700-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGTATTTCTATATGCCATAACGCCAATTATTATTTGTCTTAGCTGCAAGAAAGAACTGCTGCAA
GCTAAGTCACTAACTATGATTTATCATCACCTCTACctcaggtggcaggattcgtatatttctg
tggttcactggatttgccaagagtggatgatgtggaggcccaaaagtacgttcagaattagaga
aaagaact
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1243
Transcript exons: 27306018-27306358,27306566-27307467
CTCAGGTGGCAGGATTCGTATATTTCTGTGGTTCACTGGATTTGCCAAGAGTGGATGATGTGGA
GGCCCAAAAGTACGTTCAGAATTAGAGAAAAGAACTGGAATCCTTGGACCCAAATGGAACCGGT
TGCCAGAATGATTTACACCATGTAAGACAGGATTATTGTGGCATTGTTGGTAAGGAGCTTGCAC
TTGTGTATGATCAAGCAGATTATGAGCATGCATGCCAGCATGCTGATGAAAATAGGGTAAAGGC
CCTCGACATAAGGTTGAAGGGCCATTCTGATATTCACGGAAGCTTCCATTCACTGTTTCTGTCA
TACCTGAACGGGAAAATCTGCCTGGAGCATTATTCATTCCATTGACATATTCCCACTGTGGTAT
TCCATCAGCAATACCATTTGCAGACTGGGAAATCCATGTATTGCTAGTAGGTTGAAAGCACTGG
CTGATGTGACTAGTTGGAAATGCATAATTACCATGCTGTGCTGATTCTGGGTGAGCACCCATCA
AATTAAAGCCATTACTGGGAATGGAAGATCCTTCCATAGATGGCCAACTGGTCTGGCTATGGTA
CTCTGATGGGTTATATGATGCAGTGTTAGGCAAAACATTTGACTCAAAAGAAGGATCCCATGGC
CTATGTGTAGGATTCAGAGATGCATGAGAAGAGCTTGAACTTGCAAATCCATTAGCACAGTGGT
AACTTCCTGCAACTGCAGCATTTTTCCTTTTAATGAATCCTCTAGCACTTTCACCAGCATTTTC
ATTTCTGCTACCTTCATCCATGCTTCCTAGAACAACTTGGTTTGATGGCAATCCGAAGCTCTGA
GTGTGAGAAACATATTGGTTCATAGATGTTGTCGACATGCAGGGGTTGTACATACTGGATGGGA
AGACAAAACCTGAATCAACTCCTAAATTTGGAGGCAAGTTATGAACAGGTTGATGTGGATGGTT
CATGCCCGCATCATAGTAACTTCGCATATCAGATAGACCAATGTTTGTAGCATTTCCTACCCCT
CTGACAGCATGTTGTGCACCTTGGTCAGATGAATCATTCCCAGTGCGATTAAAACTTTCAGAAT
GAATATGAGAGTGCCCTTGTTCAGTTTCTAGATCAATTACTTGGGGAGTGCATACCGTATTTCT
ATATGCCATAACGCCAATTATTATTTGTCTTAGCTGCAAGAAAGAACTGCTGCAAGCTAAGTCA
CTAACTATGATTTATCATCACCTCTAC

Transcript length: 1246
Transcript exons: 27306018-27306361,27306566-27307467
CTCAGGTGGCAGGATTCGTATATTTCTGTGGTTCACTGGATTTGCCAAGAGTGGATGATGTGGA
GGCCCAAAAGTACGTTCAGAATTAGAGAAAAGAACTGGAATCCTTGGACCCAAATGGAACCGGT
TGCCAGAATGATTTACACCATGTAAGACAGGATTATTGTGGCATTGTTGGTAAGGAGCTTGCAC
TTGTGTATGATCAAGCAGATTATGAGCATGCATGCCAGCATGCTGATGAAAATAGGGTAAAGGC
CCTCGACATAAGGTTGAAGGGCCATTCTGATATTCACGGAAGCTTCCATTCACTGTTTCTGTCA
TACCTGAACGGGAAAATCTGCCTGCTGGAGCATTATTCATTCCATTGACATATTCCCACTGTGG
TATTCCATCAGCAATACCATTTGCAGACTGGGAAATCCATGTATTGCTAGTAGGTTGAAAGCAC
TGGCTGATGTGACTAGTTGGAAATGCATAATTACCATGCTGTGCTGATTCTGGGTGAGCACCCA
TCAAATTAAAGCCATTACTGGGAATGGAAGATCCTTCCATAGATGGCCAACTGGTCTGGCTATG
GTACTCTGATGGGTTATATGATGCAGTGTTAGGCAAAACATTTGACTCAAAAGAAGGATCCCAT
GGCCTATGTGTAGGATTCAGAGATGCATGAGAAGAGCTTGAACTTGCAAATCCATTAGCACAGT
GGTAACTTCCTGCAACTGCAGCATTTTTCCTTTTAATGAATCCTCTAGCACTTTCACCAGCATT
TTCATTTCTGCTACCTTCATCCATGCTTCCTAGAACAACTTGGTTTGATGGCAATCCGAAGCTC
TGAGTGTGAGAAACATATTGGTTCATAGATGTTGTCGACATGCAGGGGTTGTACATACTGGATG
GGAAGACAAAACCTGAATCAACTCCTAAATTTGGAGGCAAGTTATGAACAGGTTGATGTGGATG
GTTCATGCCCGCATCATAGTAACTTCGCATATCAGATAGACCAATGTTTGTAGCATTTCCTACC
CCTCTGACAGCATGTTGTGCACCTTGGTCAGATGAATCATTCCCAGTGCGATTAAAACTTTCAG
AATGAATATGAGAGTGCCCTTGTTCAGTTTCTAGATCAATTACTTGGGGAGTGCATACCGTATT
TCTATATGCCATAACGCCAATTATTATTTGTCTTAGCTGCAAGAAAGAACTGCTGCAAGCTAAG
TCACTAACTATGATTTATCATCACCTCTAC

Genomic sequence CTCAGGTGGCAGGATTCGTATATTTCTGTGGTTCACTGGATTTGCCAAGAGTGGATGATGTGGA
GGCCCAAAAGTACGTTCAGAATTAGAGAAAAGAACTGGAATCCTTGGACCCAAATGGAACCGGT
TGCCAGAATGATTTACACCATGTAAGACAGGATTATTGTGGCATTGTTGGTAAGGAGCTTGCAC
TTGTGTATGATCAAGCAGATTATGAGCATGCATGCCAGCATGCTGATGAAAATAGGGTAAAGGC
CCTCGACATAAGGTTGAAGGGCCATTCTGATATTCACGGAAGCTTCCATTCACTGTTTCTGTCA
TACCTGAACGGGAAAATCTGCCTGCTGAAAGCATAAAGGTTTCCAATTACTCCTAGTGTGAACA
CATAAGTTCATTCTGTAGGTGGAGACATTTTTTGAAATTTTCGCCACTCTTACCATGCAAGCTA
AACCACTAGTCCAGACATCAAGGCACATTGAACAACTATTCAAGTCATTAGAAAGAAGGAAATA
AATTGATGACGATCTAAGGATCAAACGAAAAGTTACCTGGAGCATTATTCATTCCATTGACATA
TTCCCACTGTGGTATTCCATCAGCAATACCATTTGCAGACTGGGAAATCCATGTATTGCTAGTA
GGTTGAAAGCACTGGCTGATGTGACTAGTTGGAAATGCATAATTACCATGCTGTGCTGATTCTG
GGTGAGCACCCATCAAATTAAAGCCATTACTGGGAATGGAAGATCCTTCCATAGATGGCCAACT
GGTCTGGCTATGGTACTCTGATGGGTTATATGATGCAGTGTTAGGCAAAACATTTGACTCAAAA
GAAGGATCCCATGGCCTATGTGTAGGATTCAGAGATGCATGAGAAGAGCTTGAACTTGCAAATC
CATTAGCACAGTGGTAACTTCCTGCAACTGCAGCATTTTTCCTTTTAATGAATCCTCTAGCACT
TTCACCAGCATTTTCATTTCTGCTACCTTCATCCATGCTTCCTAGAACAACTTGGTTTGATGGC
AATCCGAAGCTCTGAGTGTGAGAAACATATTGGTTCATAGATGTTGTCGACATGCAGGGGTTGT
ACATACTGGATGGGAAGACAAAACCTGAATCAACTCCTAAATTTGGAGGCAAGTTATGAACAGG
TTGATGTGGATGGTTCATGCCCGCATCATAGTAACTTCGCATATCAGATAGACCAATGTTTGTA
GCATTTCCTACCCCTCTGACAGCATGTTGTGCACCTTGGTCAGATGAATCATTCCCAGTGCGAT
TAAAACTTTCAGAATGAATATGAGAGTGCCCTTGTTCAGTTTCTAGATCAATTACTTGGGGAGT
GCATACCGTATTTCTATATGCCATAACGCCAATTATTATTTGTCTTAGCTGCAAGAAAGAACTG
CTGCAAGCTAAGTCACTAACTATGATTTATCATCACCTCTAC
Conservation Information
Conserved circRNAs osi_circ_002281* osi_circ_010514
PMCS 0.418117235
Functional Information
Coding potential Y
Potential coding position 27307448-27306167(+)
27307387-27307443(-)
Potential amino acid sequence MIYHHLYLRWQDSYISVVHWICQEWMMWRPKSTFRIREKNWNPWTQMEPVARMIYTM*(+)
MAYRNTVCTPQVIDLETEQGHSHIHSESFNRTGNDSSDQGAQHAVRGVGNATNIGLSDMRSYYD
AGMNHPHQPVHNLPPNLGVDSGFVFPSSMYNPCMSTTSMNQYVSHTQSFGLPSNQVVLGSMDEG
SRNENAGESARGFIKRKNAAVAGSYHCANGFASSSSSHASLNPTHRPWDPSFESNVLPNTASYN
PSEYHSQTSWPSMEGSSIPSNGFNLMGAHPESAQHGNYAFPTSHISQCFQPTSNTWISQSANGI
ADGIPQWEYVNGMNNAPAGRFSRSGMTETVNGSFREYQNGPSTLCRGPLPYFHQHAGMHAHNLL
DHTQVQAPYQQCHNNPVLHGVNHSGNRFHLGPRIPVLFSNSERTFGPPHHPLLANPVNHRNIRI
LPPEVEVMINHS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015;Chu et al., 2017