Plant Circular RNA Database

Detail information of Os02g0736400_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os02g0736400_circ_g.1
					
						ID in PlantcircBase
						osa_circ_016433
					
						Alias
						Os_ciR8073
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 30746707-30748263  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							Os02g0736400						
					
						Parent gene annotation
						
							Aldolase-type TIM barrel domain containing protein. (Os02t073640
0-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os02g0736400_circ_g.2 						
					
						Support reads
						2
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0736400-01:5

General Information
CircRNA Name	Os02g0736400_circ_g.1
ID in PlantcircBase	osa_circ_016433
Alias	Os_ciR8073
Organism	Oryza sativa
Position	chr2: 30746707-30748263 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	find_circ
Parent gene	Os02g0736400
Parent gene annotation	Aldolase-type TIM barrel domain containing protein. (Os02t073640 0-01)
Parent gene strand	-
Alternative splicing	Os02g0736400_circ_g.2
Support reads	2
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0736400-01:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GCCATCCGATGATAGGACTCTTAGTAGATCCATTGGGGTCCGCCCTGAGCCGGGCATAGCGAGG
GGTTACGTTGATAACTTTCTCAGCATCCAAGGATACccccggaaatcttctattgaggaaaagt
tgtgttgtctcataaaatcctgcagctctgcacaaagcttctttacaaggccataaccatgcat
cattacgc

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 842
Transcript exons: 30746707-30746816,30747085-30747268,30747364-30747476,30
747749-30747919,30748000-30748263
CCCCGGAAATCTTCTATTGAGGAAAAGTTGTGTTGTCTCATAAAATCCTGCAGCTCTGCACAAA
GCTTCTTTACAAGGCCATAACCATGCATCATTACGCCCGTACATACCTGTACTGTATCTGCGCC
AAGTAGAATAAACTCAGCAGCATCATTGCCAGTCTCCACGCCTCCAATAGCAGAGAGTGACTGT
CCATCAGCAAATTCTTCTTTCATCATCCTTGCTATCTGCATGACTTTCGCAAGTGCTATAGGGT
GCACGGCTCTCGCAGAATAGCCTCCAGGCGTGGAATAACCCTCCACACAAGGTTCTGGTCGCAA
AGTTTTGAGGTTAATTCCCATCACACTCATGATTGTGTTAATAGCAGAAACTCCTTCACATCCT
GACTTAAGAGAAATTCTTGCAGGCTTTGTAATATCTGTAATGTTAGGAGTCATCTTTGCCCAAA
CAGGCACTGTAGCCTTCTCATTTATCCAACCGCAGACCTCCTCTAACAAGTCACAGTCTTGTCC
CACGGCAGCACCCATTTTTCGCTCTGGCATGCCATGTGGGCATGAGAAATTAATCTCAAGAGCA
TCCACTCCGCTCTCTTCAACGCGTTCAATAAGCTCATGCCATGCAGCTTTGTTGTACTCCTCCA
TTATTGAGCCAATGAGTATCCTGTCAGGATACTCTTTCTTCAGTTGCTTGAATTCATTCAGCAT
AGTTTCTAGAGGCCGATCACTGATAAGTTCAATGTTCTGCCATCCGATGATAGGACTCTTAGTA
GATCCATTGGGGTCCGCCCTGAGCCGGGCATAGCGAGGGGTTACGTTGATAACTTTCTCAGCAT
CCAAGGATAC
						
					

						Genomic sequence
						
							CCCCGGAAATCTTCTATTGAGGAAAAGTTGTGTTGTCTCATAAAATCCTGCAGCTCTGCACAAA
GCTTCTTTACAAGGCCATAACCATGCATCATTACGCCCGTACATACCTACAATGAATGGCCATT
AGTCAAGTCTTATTATTATGCTGTTCAAGATAAGCATGGAGCTAATCAATTAATTGCAAAAATG
ATGCCTGAAAAAATCTAGAATATAATTCAACATCAACTGTACACGAGCAGCACACATTATGATC
TTCAAAATCCATAGTAAAGGGAGCCACATAGGTTGCCAGATTGGAAACATGTGTAATAACAGCA
GCATCAAGTAGAATATAAACATGCATAATACTAACATTAGTACCATGTTAGAGCTTACCTGTAC
TGTATCTGCGCCAAGTAGAATAAACTCAGCAGCATCATTGCCAGTCTCCACGCCTCCAATAGCA
GAGAGTGACTGTCCATCAGCAAATTCTTCTTTCATCATCCTTGCTATCTGCATGACTTTCGCAA
GTGCTATAGGGTGCACGGCTCTCGCAGAATAGCCTCCAGGCGTGGAATAACTGTGGAATCAAGT
GGTTTTTATAAGAAAAAAAATGGTAACAGTAAAGGAATATGTTCCATAGGGAAAAAAAGAACTC
AGGGAATTGAATCTAACCCCTCCACACAAGGTTCTGGTCGCAAAGTTTTGAGGTTAATTCCCAT
CACACTCATGATTGTGTTAATAGCAGAAACTCCTTCACATCCTGACTTAAGAGAAATTCTTGCA
GGCTGCACAATGCAAGTAAGGAATGAAAACATTGACCCATAAAAAAAACTAATTCTTGGTAGAT
CTTAAAAAGCACCTAAATCTTGGTATTCTAATGTAGTGGTAATTCCATAGATGGTGATGCTAGG
GCTTCAAGAGATGTCCAAAACATGTTACACGAACGCTAAATAATAATTCGCGAACACGATGTCC
AAAACAATGTGAAAACCGGGTGGGATAAAAACTAATTTAGGATCTCATTTAAGTGCTGCGAAGA
TGTATATGTTTGACTAACCTTTGTAATATCTGTAATGTTAGGAGTCATCTTTGCCCAAACAGGC
ACTGTAGCCTTCTCATTTATCCAACCGCAGACCTCCTCTAACAAGTCACAGTCTTGTCCCACGG
CAGCACCCATTTTTCGCTCTGGCATGCCATGTGGGCATGAGAAATTAATCTCAAGAGCATCCTG
ATAGAAACAGATCATTAACATTCCAACATGATAAGTTCGACCAAGAATGCACCAAAATGCACAT
AAGGGAAGGTTACCACTCCGCTCTCTTCAACGCGTTCAATAAGCTCATGCCATGCAGCTTTGTT
GTACTCCTCCATTATTGAGCCAATGAGTATCCTGTCAGGATACTCTTTCTTCAGTTGCTTGAAT
TCATTCAGCATAGTTTCTAGAGGCCGATCACTGATAAGTTCAATGTTCTGCCATCCGATGATAG
GACTCTTAGTAGATCCATTGGGGTCCGCCCTGAGCCGGGCATAGCGAGGGGTTACGTTGATAAC
TTTCTCAGCATCCAAGGATAC
						
					

			
		

Sequences
Splice junction sequence	GCCATCCGATGATAGGACTCTTAGTAGATCCATTGGGGTCCGCCCTGAGCCGGGCATAGCGAGG GGTTACGTTGATAACTTTCTCAGCATCCAAGGATACccccggaaatcttctattgaggaaaagt tgtgttgtctcataaaatcctgcagctctgcacaaagcttctttacaaggccataaccatgcat cattacgc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 842 Transcript exons: 30746707-30746816,30747085-30747268,30747364-30747476,30 747749-30747919,30748000-30748263 CCCCGGAAATCTTCTATTGAGGAAAAGTTGTGTTGTCTCATAAAATCCTGCAGCTCTGCACAAA GCTTCTTTACAAGGCCATAACCATGCATCATTACGCCCGTACATACCTGTACTGTATCTGCGCC AAGTAGAATAAACTCAGCAGCATCATTGCCAGTCTCCACGCCTCCAATAGCAGAGAGTGACTGT CCATCAGCAAATTCTTCTTTCATCATCCTTGCTATCTGCATGACTTTCGCAAGTGCTATAGGGT GCACGGCTCTCGCAGAATAGCCTCCAGGCGTGGAATAACCCTCCACACAAGGTTCTGGTCGCAA AGTTTTGAGGTTAATTCCCATCACACTCATGATTGTGTTAATAGCAGAAACTCCTTCACATCCT GACTTAAGAGAAATTCTTGCAGGCTTTGTAATATCTGTAATGTTAGGAGTCATCTTTGCCCAAA CAGGCACTGTAGCCTTCTCATTTATCCAACCGCAGACCTCCTCTAACAAGTCACAGTCTTGTCC CACGGCAGCACCCATTTTTCGCTCTGGCATGCCATGTGGGCATGAGAAATTAATCTCAAGAGCA TCCACTCCGCTCTCTTCAACGCGTTCAATAAGCTCATGCCATGCAGCTTTGTTGTACTCCTCCA TTATTGAGCCAATGAGTATCCTGTCAGGATACTCTTTCTTCAGTTGCTTGAATTCATTCAGCAT AGTTTCTAGAGGCCGATCACTGATAAGTTCAATGTTCTGCCATCCGATGATAGGACTCTTAGTA GATCCATTGGGGTCCGCCCTGAGCCGGGCATAGCGAGGGGTTACGTTGATAACTTTCTCAGCAT CCAAGGATAC
Genomic sequence	CCCCGGAAATCTTCTATTGAGGAAAAGTTGTGTTGTCTCATAAAATCCTGCAGCTCTGCACAAA GCTTCTTTACAAGGCCATAACCATGCATCATTACGCCCGTACATACCTACAATGAATGGCCATT AGTCAAGTCTTATTATTATGCTGTTCAAGATAAGCATGGAGCTAATCAATTAATTGCAAAAATG ATGCCTGAAAAAATCTAGAATATAATTCAACATCAACTGTACACGAGCAGCACACATTATGATC TTCAAAATCCATAGTAAAGGGAGCCACATAGGTTGCCAGATTGGAAACATGTGTAATAACAGCA GCATCAAGTAGAATATAAACATGCATAATACTAACATTAGTACCATGTTAGAGCTTACCTGTAC TGTATCTGCGCCAAGTAGAATAAACTCAGCAGCATCATTGCCAGTCTCCACGCCTCCAATAGCA GAGAGTGACTGTCCATCAGCAAATTCTTCTTTCATCATCCTTGCTATCTGCATGACTTTCGCAA GTGCTATAGGGTGCACGGCTCTCGCAGAATAGCCTCCAGGCGTGGAATAACTGTGGAATCAAGT GGTTTTTATAAGAAAAAAAATGGTAACAGTAAAGGAATATGTTCCATAGGGAAAAAAAGAACTC AGGGAATTGAATCTAACCCCTCCACACAAGGTTCTGGTCGCAAAGTTTTGAGGTTAATTCCCAT CACACTCATGATTGTGTTAATAGCAGAAACTCCTTCACATCCTGACTTAAGAGAAATTCTTGCA GGCTGCACAATGCAAGTAAGGAATGAAAACATTGACCCATAAAAAAAACTAATTCTTGGTAGAT CTTAAAAAGCACCTAAATCTTGGTATTCTAATGTAGTGGTAATTCCATAGATGGTGATGCTAGG GCTTCAAGAGATGTCCAAAACATGTTACACGAACGCTAAATAATAATTCGCGAACACGATGTCC AAAACAATGTGAAAACCGGGTGGGATAAAAACTAATTTAGGATCTCATTTAAGTGCTGCGAAGA TGTATATGTTTGACTAACCTTTGTAATATCTGTAATGTTAGGAGTCATCTTTGCCCAAACAGGC ACTGTAGCCTTCTCATTTATCCAACCGCAGACCTCCTCTAACAAGTCACAGTCTTGTCCCACGG CAGCACCCATTTTTCGCTCTGGCATGCCATGTGGGCATGAGAAATTAATCTCAAGAGCATCCTG ATAGAAACAGATCATTAACATTCCAACATGATAAGTTCGACCAAGAATGCACCAAAATGCACAT AAGGGAAGGTTACCACTCCGCTCTCTTCAACGCGTTCAATAAGCTCATGCCATGCAGCTTTGTT GTACTCCTCCATTATTGAGCCAATGAGTATCCTGTCAGGATACTCTTTCTTCAGTTGCTTGAAT TCATTCAGCATAGTTTCTAGAGGCCGATCACTGATAAGTTCAATGTTCTGCCATCCGATGATAG GACTCTTAGTAGATCCATTGGGGTCCGCCCTGAGCCGGGCATAGCGAGGGGTTACGTTGATAAC TTTCTCAGCATCCAAGGATAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_004255* osi_circ_012260 						
					
						PMCS
						0.298405449

Conservation Information
Conserved circRNAs	osi_circ_004255* osi_circ_012260
PMCS	0.298405449

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							30748127-30748232(-)
30746816-30748232(-)
						
						Potential amino acid sequence
						
							MLNEFKQLKKEYPDRILIGSIMEEYNKAAWHELIERVEESGVDALEINFSCPHGMPERKMGAAV
GQDCDLLEEVCGWINEKATVPVWAKMTPNITDITKPARISLKSGCEGVSAINTIMSVMGINLKT
LRPEPCVEGYSTPGGYSARAVHPIALAKVMQIARMMKEEFADGQSLSAIGGVETGNDAAEFILL
GADTVQVCTGVMMHGYGLVKKLCAELQDFMRQHNFSSIEDFRGYPWMLRKLST*(-)
MYGRNDAWLWPCKEALCRAAGFYETTQLFLNRRFPGVSLDAEKVINVTPRYARLRADPNGSTKS
PIIGWQNIELISDRPLETMLNEFKQLKKEYPDRILIGSIMEEYNKAAWHELIERVEESGVDALE
INFSCPHGMPERKMGAAVGQDCDLLEEVCGWINEKATVPVWAKMTPNITDITKPARISLKSGCE
GVSAINTIMSVMGINLKTLRPEPCVEGYSTPGGYSARAVHPIALAKVMQIARMMKEEFADGQSL
SAIGGVETGNDAAEFILLGADTVQVCTGVMMHGYGLVKKLCAELQDFMRQHNFSSIEDFRGYPW
MLRKLST*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	30748127-30748232(-) 30746816-30748232(-)
Potential amino acid sequence	MLNEFKQLKKEYPDRILIGSIMEEYNKAAWHELIERVEESGVDALEINFSCPHGMPERKMGAAV GQDCDLLEEVCGWINEKATVPVWAKMTPNITDITKPARISLKSGCEGVSAINTIMSVMGINLKT LRPEPCVEGYSTPGGYSARAVHPIALAKVMQIARMMKEEFADGQSLSAIGGVETGNDAAEFILL GADTVQVCTGVMMHGYGLVKKLCAELQDFMRQHNFSSIEDFRGYPWMLRKLST(-) MYGRNDAWLWPCKEALCRAAGFYETTQLFLNRRFPGVSLDAEKVINVTPRYARLRADPNGSTKS PIIGWQNIELISDRPLETMLNEFKQLKKEYPDRILIGSIMEEYNKAAWHELIERVEESGVDALE INFSCPHGMPERKMGAAVGQDCDLLEEVCGWINEKATVPVWAKMTPNITDITKPARISLKSGCE GVSAINTIMSVMGINLKTLRPEPCVEGYSTPGGYSARAVHPIALAKVMQIARMMKEEFADGQSL SAIGGVETGNDAAEFILLGADTVQVCTGVMMHGYGLVKKLCAELQDFMRQHNFSSIEDFRGYPW MLRKLST(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015

circRNA

Detail information of Os02g0736400_circ_g.1

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