Detail information of BGIOSGA034659_circ_g.1


General Information
CircRNA Name BGIOSGA034659_circ_g.1
ID in PlantcircBase osi_circ_009007
Alias Chr11:442075_443075(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr11: 130274-131274  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA034659
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA034659_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered BGIOSGA034659-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGATTTCTGCTTGAAGAGTCATGGACTAATCTGTACACCAGAAGTCTACTACAGGAAGCTATCT
GCAAAAGATGACTTCTTGGTACTTGCTACTGACGGGggactttgcggggcacaagggccagata
ttttgtggagtttttgatgggcatggccctctcggaagggaagttgctcgccatgtccgcgacg
tccttcca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGACTTTGCGGGGCACAAGGGCCAGATATTTTGTGGAGTTTTTGATGGGCATGGCCCTCTCGGA
AGGGAAGTTGCTCGCCATGTCCGCGACGTCCTTCCAGTGAAACTATCCTCCTCTTTGGCACTGA
AGACTGAACAAGATCCATCCAGCAACACAGATAAGGAAACCTTGGAAAAGTCAGATTGCACCTC
ATTGAGCGATACAAGCAATGAGAAGCAATTGTTATCCACCTGGAAGAACATATTTGTCAAGACA
TTTGAGGATGTTGATGAGGATCTGAGGCAACATTCTGGAATTGACTGCATTTGTAGTGGCACAA
CTGCTGTCACTGTCGTTAGGCAGGTACTAGTGCTACAACTATGCAAACTTGCAACATTTTTTTG
TATTGCCAATAGTCTTGCCTATGCACTAGAAATACACCGTTTCTGCCTAAAAAACAAGCTTCTG
AAACCATCAGATGCAACAAAGAAACTTGCCGAATTTTATGCGTATGTTACAGCTATACTTGTGC
CTAAATACAGAACTCTCAAACTCGTAATCATTCTGATTAAATTCCCAAATACTATTCTTATGCA
CAGGGTGATCACCTGATCATTGCAAATTTGGGCGATTCACGTGCGGTTCTTTGCACCCGAGACA
GCAAGGACCGCCCAATTTCAGTCCAACTAACCACTGACCTGAAACCAAATCTTCCAAGTAAGCC
TCTGAATTTCTCAAAGTACAGAGATGTCTAAATTCAGACATTCACTTGTCATTCATATGGGGGC
TTCTGACAGGCGAAGCTGAGAGAATCCTGAATTCCAAGGGGCGGGTTTTCGCCATGGACGATGA
GCCGGACGTGCCTAGGATGTGGCTACCAGACCAAGACGCGCCGGGCCTCGCCATGGCAAGGGCA
TTTGGAGATTTCTGCTTGAAGAGTCATGGACTAATCTGTACACCAGAAGTCTACTACAGGAAGC
TATCTGCAAAAGATGACTTCTTGGTACTTGCTACTGACGGG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR319a-3p.2-3p
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021