Detail information of Os07g0108300_circ_g.16


General Information
CircRNA Name Os07g0108300_circ_g.16
ID in PlantcircBase osa_circ_032597
Alias NA
Organism Oryza sativa
Position chr7: 450590-450756  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os07g0108300
Parent gene annotation Similar to Alanine aminotransferase. (Os07t0108300-01);Similar t
o Alanine aminotransferase. (Os07t0108300-02)
Parent gene strand -
Alternative splicing Os07g0108300_circ_g.15
Support reads 2
Tissues shoot
Exon boundary   No-No
Splicing signals   CT-CC
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACAACTTATGGGAGCATTTCGATTGAGGAAAGGATACATGATAGGTTTGCCAAGAACACTAGAG
TTGTGTGTGACTGTGATACtgagtcaacgagctcgcgtgtatgggctacgagagaagaactaca
tacacaactaaaaaggcttttgcaaggaagctaaagttg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 167
Transcript exons: 450590-450756
TGAGTCAACGAGCTCGCGTGTATGGGCTACGAGAGAAGAACTACATACACAACTAAAAAGGCTT
TTGCAAGGAAGCTAAAGTTGACAACTTATGGGAGCATTTCGATTGAGGAAAGGATACATGATAG
GTTTGCCAAGAACACTAGAGTTGTGTGTGACTGTGATAC

Genomic sequence TGAGTCAACGAGCTCGCGTGTATGGGCTACGAGAGAAGAACTACATACACAACTAAAAAGGCTT
TTGCAAGGAAGCTAAAGTTGACAACTTATGGGAGCATTTCGATTGAGGAAAGGATACATGATAG
GTTTGCCAAGAACACTAGAGTTGTGTGTGACTGTGATAC
Conservation Information
Conserved circRNAs NA
PMCS 0.34760479
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017