Plant Circular RNA Database

Detail information of AT3G48470_circ_g.3

			
						 General Information
					
						CircRNA Name
						AT3G48470_circ_g.3
					
						ID in PlantcircBase
						ath_circ_026560
					
						Alias
						Ath_circ_FC2295, AT3G48470_C1
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr3: 17953266-17954439  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, CIRI, KNIFE, MapSplice, PcircRNA_finder, circRNA_finder, find_circ, CIRI2
					
						Parent gene
						
							AT3G48470						
					
						Parent gene annotation
						
							Embryo defective 2423
							
						Parent gene strand
						+
					
						Alternative splicing
						
							AT3G48470_circ_g.2 						
					
						Support reads
						2/NA/18/2
					
						Tissues
						NA/root/root, leaf, inflorescences, whole_plant/seedlings
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT3G48470.2:3
AT3G48470.1:3

General Information
CircRNA Name	AT3G48470_circ_g.3
ID in PlantcircBase	ath_circ_026560
Alias	Ath_circ_FC2295, AT3G48470_C1
Organism	Arabidpsis thaliana
Position	chr3: 17953266-17954439 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	CIRCexplorer, CIRI, KNIFE, MapSplice, PcircRNA_finder, circRNA_finder, find_circ, CIRI2
Parent gene	AT3G48470
Parent gene annotation	Embryo defective 2423
Parent gene strand	+
Alternative splicing	AT3G48470_circ_g.2
Support reads	2/NA/18/2
Tissues	NA/root/root, leaf, inflorescences, whole_plant/seedlings
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT3G48470.2:3 AT3G48470.1:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							Yes							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							F: AAGCAGTGACAGATCCGTATG
 R: GTCCAACTGAAATGTATCCACC
PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	Yes Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	F: AAGCAGTGACAGATCCGTATG R: GTCCAACTGAAATGTATCCACC PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GGTGATGTCACACAAGGACTTCTTGAAACAACGCAGCGACTAGCCTCAGTTTGGTCAAAACGGG
AGTTTCTGCAGTCCGTCCAATTGGAGCAGCAAGCTTcttgtacttcaagcacattaccaatcag
cttctacaaatattggacgacagggcttcctgcactgaggccaattgcacagttatcgttttat
catttgtc

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 162
Transcript exons: 17953266-17953309,17954322-17954439
CTTGTACTTCAAGCACATTACCAATCAGCTTCTACAAATATTGGACTAATACACTTGCTAAAGG
TGATGTCACACAAGGACTTCTTGAAACAACGCAGCGACTAGCCTCAGTTTGGTCAAAACGGGAG
TTTCTGCAGTCCGTCCAATTGGAGCAGCAAGCTT
Transcript length: 170
Transcript exons: 17953266-17953343,17954348-17954439
CTTGTACTTCAAGCACATTACCAATCAGCTTCTACAAATATTGGACGACAGGGCTTCCTGCACT
GAGGCCAATTGCACCACACAAGGACTTCTTGAAACAACGCAGCGACTAGCCTCAGTTTGGTCAA
AACGGGAGTTTCTGCAGTCCGTCCAATTGGAGCAGCAAGCTT
Transcript length: 179
Transcript exons: 17953266-17953343,17954339-17954439
CTTGTACTTCAAGCACATTACCAATCAGCTTCTACAAATATTGGACGACAGGGCTTCCTGCACT
GAGGCCAATTGCACAGGTGATGTCACACAAGGACTTCTTGAAACAACGCAGCGACTAGCCTCAG
TTTGGTCAAAACGGGAGTTTCTGCAGTCCGTCCAATTGGAGCAGCAAGCTT
Transcript length: 189
Transcript exons: 17953266-17953343,17954329-17954439
CTTGTACTTCAAGCACATTACCAATCAGCTTCTACAAATATTGGACGACAGGGCTTCCTGCACT
GAGGCCAATTGCACCACTTGCTAAAGGTGATGTCACACAAGGACTTCTTGAAACAACGCAGCGA
CTAGCCTCAGTTTGGTCAAAACGGGAGTTTCTGCAGTCCGTCCAATTGGAGCAGCAAGCTT
Transcript length: 198
Transcript exons: 17953266-17953311,17954288-17954439
CTTGTACTTCAAGCACATTACCAATCAGCTTCTACAAATATTGGACCTTACAATTTTCAGTTCT
TGAGTGCCCACCGGTTACTAATACACTTGCTAAAGGTGATGTCACACAAGGACTTCTTGAAACA
ACGCAGCGACTAGCCTCAGTTTGGTCAAAACGGGAGTTTCTGCAGTCCGTCCAATTGGAGCAGC
AAGCTT
Transcript length: 205
Transcript exons: 17953266-17953345,17954315-17954439
CTTGTACTTCAAGCACATTACCAATCAGCTTCTACAAATATTGGACGACAGGGCTTCCTGCACT
GAGGCCAATTGCACAGACCGGTTACTAATACACTTGCTAAAGGTGATGTCACACAAGGACTTCT
TGAAACAACGCAGCGACTAGCCTCAGTTTGGTCAAAACGGGAGTTTCTGCAGTCCGTCCAATTG
GAGCAGCAAGCTT
Transcript length: 221
Transcript exons: 17953266-17953311,17954265-17954439
CTTGTACTTCAAGCACATTACCAATCAGCTTCTACAAATATTGGACCCTATACGTTGTCTTCGA
TGGATCTTACAATTTTCAGTTCTTGAGTGCCCACCGGTTACTAATACACTTGCTAAAGGTGATG
TCACACAAGGACTTCTTGAAACAACGCAGCGACTAGCCTCAGTTTGGTCAAAACGGGAGTTTCT
GCAGTCCGTCCAATTGGAGCAGCAAGCTT
Transcript length: 228
Transcript exons: 17953266-17953311,17954258-17954439
CTTGTACTTCAAGCACATTACCAATCAGCTTCTACAAATATTGGACAGTGTTTCCTATACGTTG
TCTTCGATGGATCTTACAATTTTCAGTTCTTGAGTGCCCACCGGTTACTAATACACTTGCTAAA
GGTGATGTCACACAAGGACTTCTTGAAACAACGCAGCGACTAGCCTCAGTTTGGTCAAAACGGG
AGTTTCTGCAGTCCGTCCAATTGGAGCAGCAAGCTT
Transcript length: 229
Transcript exons: 17953266-17953366,17954312-17954439
CTTGTACTTCAAGCACATTACCAATCAGCTTCTACAAATATTGGACGACAGGGCTTCCTGCACT
GAGGCCAATTGCACAGTTATCGTTTTATCATTTGTCGCCCACCGGTTACTAATACACTTGCTAA
AGGTGATGTCACACAAGGACTTCTTGAAACAACGCAGCGACTAGCCTCAGTTTGGTCAAAACGG
GAGTTTCTGCAGTCCGTCCAATTGGAGCAGCAAGCTT
Transcript length: 229
Transcript exons: 17953266-17953393,17954339-17954439
CTTGTACTTCAAGCACATTACCAATCAGCTTCTACAAATATTGGACGACAGGGCTTCCTGCACT
GAGGCCAATTGCACAGTTATCGTTTTATCATTTGTCGGGGAAGTTTTTTCCCGCATCTGTCGAC
AGGTGATGTCACACAAGGACTTCTTGAAACAACGCAGCGACTAGCCTCAGTTTGGTCAAAACGG
GAGTTTCTGCAGTCCGTCCAATTGGAGCAGCAAGCTT
Transcript length: 230
Transcript exons: 17953266-17953343,17954288-17954439
CTTGTACTTCAAGCACATTACCAATCAGCTTCTACAAATATTGGACGACAGGGCTTCCTGCACT
GAGGCCAATTGCACCTTACAATTTTCAGTTCTTGAGTGCCCACCGGTTACTAATACACTTGCTA
AAGGTGATGTCACACAAGGACTTCTTGAAACAACGCAGCGACTAGCCTCAGTTTGGTCAAAACG
GGAGTTTCTGCAGTCCGTCCAATTGGAGCAGCAAGCTT
Transcript length: 238
Transcript exons: 17953266-17953316,17954243-17954353,17954364-17954439
CTTGTACTTCAAGCACATTACCAATCAGCTTCTACAAATATTGGACGACAGATTTTTGCTATGG
AAAGTGTTTCCTATACGTTGTCTTCGATGGATCTTACAATTTTCAGTTCTTGAGTGCCCACCGG
TTACTAATACACTTGCTAAAGGTGATGTCACACAGAAACAACGCAGCGACTAGCCTCAGTTTGG
TCAAAACGGGAGTTTCTGCAGTCCGTCCAATTGGAGCAGCAAGCTT
Transcript length: 278
Transcript exons: 17953266-17953366,17954249-17954349,17954364-17954439
CTTGTACTTCAAGCACATTACCAATCAGCTTCTACAAATATTGGACGACAGGGCTTCCTGCACT
GAGGCCAATTGCACAGTTATCGTTTTATCATTTGTCGGCTATGGAAAGTGTTTCCTATACGTTG
TCTTCGATGGATCTTACAATTTTCAGTTCTTGAGTGCCCACCGGTTACTAATACACTTGCTAAA
GGTGATGTCAGAAACAACGCAGCGACTAGCCTCAGTTTGGTCAAAACGGGAGTTTCTGCAGTCC
GTCCAATTGGAGCAGCAAGCTT
Transcript length: 279
Transcript exons: 17953266-17953365,17954261-17954439
CTTGTACTTCAAGCACATTACCAATCAGCTTCTACAAATATTGGACGACAGGGCTTCCTGCACT
GAGGCCAATTGCACAGTTATCGTTTTATCATTTGTCGTTTCCTATACGTTGTCTTCGATGGATC
TTACAATTTTCAGTTCTTGAGTGCCCACCGGTTACTAATACACTTGCTAAAGGTGATGTCACAC
AAGGACTTCTTGAAACAACGCAGCGACTAGCCTCAGTTTGGTCAAAACGGGAGTTTCTGCAGTC
CGTCCAATTGGAGCAGCAAGCTT
Transcript length: 281
Transcript exons: 17953266-17953396,17954290-17954439
CTTGTACTTCAAGCACATTACCAATCAGCTTCTACAAATATTGGACGACAGGGCTTCCTGCACT
GAGGCCAATTGCACAGTTATCGTTTTATCATTTGTCGGGGAAGTTTTTTCCCGCATCTGTCGAC
GTGTACAATTTTCAGTTCTTGAGTGCCCACCGGTTACTAATACACTTGCTAAAGGTGATGTCAC
ACAAGGACTTCTTGAAACAACGCAGCGACTAGCCTCAGTTTGGTCAAAACGGGAGTTTCTGCAG
TCCGTCCAATTGGAGCAGCAAGCTT
Transcript length: 288
Transcript exons: 17953266-17953366,17954253-17954439
CTTGTACTTCAAGCACATTACCAATCAGCTTCTACAAATATTGGACGACAGGGCTTCCTGCACT
GAGGCCAATTGCACAGTTATCGTTTTATCATTTGTCGTGGAAAGTGTTTCCTATACGTTGTCTT
CGATGGATCTTACAATTTTCAGTTCTTGAGTGCCCACCGGTTACTAATACACTTGCTAAAGGTG
ATGTCACACAAGGACTTCTTGAAACAACGCAGCGACTAGCCTCAGTTTGGTCAAAACGGGAGTT
TCTGCAGTCCGTCCAATTGGAGCAGCAAGCTT
Transcript length: 301
Transcript exons: 17953266-17953291,17953293-17953393,17954266-17954439
CTTGTACTTCAAGCACATTACCAATCGCTTCTACAAATATTGGACGACAGGGCTTCCTGCACTG
AGGCCAATTGCACAGTTATCGTTTTATCATTTGTCGGGGAAGTTTTTTCCCGCATCTGTCGACC
TATACGTTGTCTTCGATGGATCTTACAATTTTCAGTTCTTGAGTGCCCACCGGTTACTAATACA
CTTGCTAAAGGTGATGTCACACAAGGACTTCTTGAAACAACGCAGCGACTAGCCTCAGTTTGGT
CAAAACGGGAGTTTCTGCAGTCCGTCCAATTGGAGCAGCAAGCTT
Transcript length: 302
Transcript exons: 17953266-17953396,17954269-17954439
CTTGTACTTCAAGCACATTACCAATCAGCTTCTACAAATATTGGACGACAGGGCTTCCTGCACT
GAGGCCAATTGCACAGTTATCGTTTTATCATTTGTCGGGGAAGTTTTTTCCCGCATCTGTCGAC
GTGTACGTTGTCTTCGATGGATCTTACAATTTTCAGTTCTTGAGTGCCCACCGGTTACTAATAC
ACTTGCTAAAGGTGATGTCACACAAGGACTTCTTGAAACAACGCAGCGACTAGCCTCAGTTTGG
TCAAAACGGGAGTTTCTGCAGTCCGTCCAATTGGAGCAGCAAGCTT
Transcript length: 332
Transcript exons: 17953266-17953406,17954249-17954439
CTTGTACTTCAAGCACATTACCAATCAGCTTCTACAAATATTGGACGACAGGGCTTCCTGCACT
GAGGCCAATTGCACAGTTATCGTTTTATCATTTGTCGGGGAAGTTTTTTCCCGCATCTGTCGAC
GTGGATTATCAGGGCTATGGAAAGTGTTTCCTATACGTTGTCTTCGATGGATCTTACAATTTTC
AGTTCTTGAGTGCCCACCGGTTACTAATACACTTGCTAAAGGTGATGTCACACAAGGACTTCTT
GAAACAACGCAGCGACTAGCCTCAGTTTGGTCAAAACGGGAGTTTCTGCAGTCCGTCCAATTGG
AGCAGCAAGCTT
Transcript length: 632
Transcript exons: 17953266-17953405,17953728-17954004,17954225-17954439
CTTGTACTTCAAGCACATTACCAATCAGCTTCTACAAATATTGGACGACAGGGCTTCCTGCACT
GAGGCCAATTGCACAGTTATCGTTTTATCATTTGTCGGGGAAGTTTTTTCCCGCATCTGTCGAC
GTGGATTATCAGATTTGCTGTTAAGTGAAGTAACACCTCATGTCCTAGCTCAAGTTAGGAGGTT
ACTAAACTCAAAGATAGGTGCTATTGAGGTGGATACATTTCAGTTGGACCCTACAACCCGGATT
TGGTCGAAAACTATGGAAGCAGTGACAGATCCGTATGCTGTTGAGAAAATGGCTGAACAACTTT
TACATCAGCTATATGCTGAGCATCCAAGTGATGTTGAAGCTTTCTGGACTATTTGGACTTTGTT
TCATCGCAATGTAATACATCAGGCATCAGTGAGGTCAATATTCGTTGACAAATTTTTGCTATGG
AAAGTGTTTCCTATACGTTGTCTTCGATGGATCTTACAATTTTCAGTTCTTGAGTGCCCACCGG
TTACTAATACACTTGCTAAAGGTGATGTCACACAAGGACTTCTTGAAACAACGCAGCGACTAGC
CTCAGTTTGGTCAAAACGGGAGTTTCTGCAGTCCGTCCAATTGGAGCAGCAAGCTT
Transcript length: 647
Transcript exons: 17953266-17953405,17953728-17954096,17954302-17954439
CTTGTACTTCAAGCACATTACCAATCAGCTTCTACAAATATTGGACGACAGGGCTTCCTGCACT
GAGGCCAATTGCACAGTTATCGTTTTATCATTTGTCGGGGAAGTTTTTTCCCGCATCTGTCGAC
GTGGATTATCAGATTTGCTGTTAAGTGAAGTAACACCTCATGTCCTAGCTCAAGTTAGGAGGTT
ACTAAACTCAAAGATAGGTGCTATTGAGGTGGATACATTTCAGTTGGACCCTACAACCCGGATT
TGGTCGAAAACTATGGAAGCAGTGACAGATCCGTATGCTGTTGAGAAAATGGCTGAACAACTTT
TACATCAGCTATATGCTGAGCATCCAAGTGATGTTGAAGCTTTCTGGACTATTTGGACTTTGTT
TCATCGCAATGTAATACATCAGGCATCAGTGAGGCAAGCAAAATGTTTTCTATGGCAGCTTGAT
TCTTTCTTTAGATACCCCTTTTTCTTCTTTCATTTCCATCCTAATGCTGTGAAACAATGCGTTC
TTGAGTGCCCACCGGTTACTAATACACTTGCTAAAGGTGATGTCACACAAGGACTTCTTGAAAC
AACGCAGCGACTAGCCTCAGTTTGGTCAAAACGGGAGTTTCTGCAGTCCGTCCAATTGGAGCAG
CAAGCTT
						
					

						Genomic sequence
						
							CTTGTACTTCAAGCACATTACCAATCAGCTTCTACAAATATTGGACGACAGGGCTTCCTGCACT
GAGGCCAATTGCACAGTTATCGTTTTATCATTTGTCGGGGAAGTTTTTTCCCGCATCTGTCGAC
GTGGATTATCAGGTATATATGCTTCTCGAACTGTATTTCAGCTCTATTTTTTTCGTTTCTCTGA
GTGTTGTGAATTATTTTTTTCGTTTCTCTAAGTGTTGTGAATTACCATGGACTTGCTTGTATTC
ATTTTCTGTCCCTTGTAATGGGAAGTTGTGAATTGTGAGAATGTAGATCAAATCATCATGACCG
ATGGGGAAAAGGATGTGCCATAATATAAACTACATTGCACTCTGTTATTGACTGATAATCTCTG
GATGGTGTGTTTATTTATTGAAGTTATTTTCATGACACAAATCATGATGTACTTTAGATTATAT
TTTTTAATCTGCAGATTTGCTGTTAAGTGAAGTAACACCTCATGTCCTAGCTCAAGTTAGGAGG
TTACTAAACTCAAAGATAGGTGCTATTGAGGTGGATACATTTCAGTTGGACCCTACAACCCGGA
TTTGGTCGAAAACTATGGAAGCAGTGACAGATCCGTATGCTGTTGAGAAAATGGCTGAACAACT
TTTACATCAGCTATATGCTGAGCATCCAAGTGATGTTGAAGCTTTCTGGACTATTTGGACTTTG
TTTCATCGCAATGTAATACATCAGGCATCAGTGAGGCAAGCAAAATGTTTTCTATGGCAGCTTG
ATTCTTTCTTTAGATACCCCTTTTTCTTCTTTCATTTCCATCCTAATGCTGTGAAACAATGCGG
TTCGACAGAAGTGAGCATGGAACTGGAACTATGATTTGTTTTTTTTTCAAAGGGAAACAGATTT
GCCGTCTATTGAGTTTTCCCAGTTTAGTCTACTTTGCAAATAATTGTGTAATTTGTTTTTCAGG
TCAATATTCGTTGACAAATTTTTGCTATGGAAAGTGTTTCCTATACGTTGTCTTCGATGGATCT
TACAATTTTCAGTTCTTGAGTGCCCACCGGTTACTAATACACTTGCTAAAGGTGATGTCACACA
AGGACTTCTTGAAACAACGCAGCGACTAGCCTCAGTTTGGTCAAAACGGGAGTTTCTGCAGTCC
GTCCAATTGGAGCAGCAAGCTT
						
					

			
		

Sequences
Splice junction sequence	GGTGATGTCACACAAGGACTTCTTGAAACAACGCAGCGACTAGCCTCAGTTTGGTCAAAACGGG AGTTTCTGCAGTCCGTCCAATTGGAGCAGCAAGCTTcttgtacttcaagcacattaccaatcag cttctacaaatattggacgacagggcttcctgcactgaggccaattgcacagttatcgttttat catttgtc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 162 Transcript exons: 17953266-17953309,17954322-17954439 CTTGTACTTCAAGCACATTACCAATCAGCTTCTACAAATATTGGACTAATACACTTGCTAAAGG TGATGTCACACAAGGACTTCTTGAAACAACGCAGCGACTAGCCTCAGTTTGGTCAAAACGGGAG TTTCTGCAGTCCGTCCAATTGGAGCAGCAAGCTT Transcript length: 170 Transcript exons: 17953266-17953343,17954348-17954439 CTTGTACTTCAAGCACATTACCAATCAGCTTCTACAAATATTGGACGACAGGGCTTCCTGCACT GAGGCCAATTGCACCACACAAGGACTTCTTGAAACAACGCAGCGACTAGCCTCAGTTTGGTCAA AACGGGAGTTTCTGCAGTCCGTCCAATTGGAGCAGCAAGCTT Transcript length: 179 Transcript exons: 17953266-17953343,17954339-17954439 CTTGTACTTCAAGCACATTACCAATCAGCTTCTACAAATATTGGACGACAGGGCTTCCTGCACT GAGGCCAATTGCACAGGTGATGTCACACAAGGACTTCTTGAAACAACGCAGCGACTAGCCTCAG TTTGGTCAAAACGGGAGTTTCTGCAGTCCGTCCAATTGGAGCAGCAAGCTT Transcript length: 189 Transcript exons: 17953266-17953343,17954329-17954439 CTTGTACTTCAAGCACATTACCAATCAGCTTCTACAAATATTGGACGACAGGGCTTCCTGCACT GAGGCCAATTGCACCACTTGCTAAAGGTGATGTCACACAAGGACTTCTTGAAACAACGCAGCGA CTAGCCTCAGTTTGGTCAAAACGGGAGTTTCTGCAGTCCGTCCAATTGGAGCAGCAAGCTT Transcript length: 198 Transcript exons: 17953266-17953311,17954288-17954439 CTTGTACTTCAAGCACATTACCAATCAGCTTCTACAAATATTGGACCTTACAATTTTCAGTTCT TGAGTGCCCACCGGTTACTAATACACTTGCTAAAGGTGATGTCACACAAGGACTTCTTGAAACA ACGCAGCGACTAGCCTCAGTTTGGTCAAAACGGGAGTTTCTGCAGTCCGTCCAATTGGAGCAGC AAGCTT Transcript length: 205 Transcript exons: 17953266-17953345,17954315-17954439 CTTGTACTTCAAGCACATTACCAATCAGCTTCTACAAATATTGGACGACAGGGCTTCCTGCACT GAGGCCAATTGCACAGACCGGTTACTAATACACTTGCTAAAGGTGATGTCACACAAGGACTTCT TGAAACAACGCAGCGACTAGCCTCAGTTTGGTCAAAACGGGAGTTTCTGCAGTCCGTCCAATTG GAGCAGCAAGCTT Transcript length: 221 Transcript exons: 17953266-17953311,17954265-17954439 CTTGTACTTCAAGCACATTACCAATCAGCTTCTACAAATATTGGACCCTATACGTTGTCTTCGA TGGATCTTACAATTTTCAGTTCTTGAGTGCCCACCGGTTACTAATACACTTGCTAAAGGTGATG TCACACAAGGACTTCTTGAAACAACGCAGCGACTAGCCTCAGTTTGGTCAAAACGGGAGTTTCT GCAGTCCGTCCAATTGGAGCAGCAAGCTT Transcript length: 228 Transcript exons: 17953266-17953311,17954258-17954439 CTTGTACTTCAAGCACATTACCAATCAGCTTCTACAAATATTGGACAGTGTTTCCTATACGTTG TCTTCGATGGATCTTACAATTTTCAGTTCTTGAGTGCCCACCGGTTACTAATACACTTGCTAAA GGTGATGTCACACAAGGACTTCTTGAAACAACGCAGCGACTAGCCTCAGTTTGGTCAAAACGGG AGTTTCTGCAGTCCGTCCAATTGGAGCAGCAAGCTT Transcript length: 229 Transcript exons: 17953266-17953366,17954312-17954439 CTTGTACTTCAAGCACATTACCAATCAGCTTCTACAAATATTGGACGACAGGGCTTCCTGCACT GAGGCCAATTGCACAGTTATCGTTTTATCATTTGTCGCCCACCGGTTACTAATACACTTGCTAA AGGTGATGTCACACAAGGACTTCTTGAAACAACGCAGCGACTAGCCTCAGTTTGGTCAAAACGG GAGTTTCTGCAGTCCGTCCAATTGGAGCAGCAAGCTT Transcript length: 229 Transcript exons: 17953266-17953393,17954339-17954439 CTTGTACTTCAAGCACATTACCAATCAGCTTCTACAAATATTGGACGACAGGGCTTCCTGCACT GAGGCCAATTGCACAGTTATCGTTTTATCATTTGTCGGGGAAGTTTTTTCCCGCATCTGTCGAC AGGTGATGTCACACAAGGACTTCTTGAAACAACGCAGCGACTAGCCTCAGTTTGGTCAAAACGG GAGTTTCTGCAGTCCGTCCAATTGGAGCAGCAAGCTT Transcript length: 230 Transcript exons: 17953266-17953343,17954288-17954439 CTTGTACTTCAAGCACATTACCAATCAGCTTCTACAAATATTGGACGACAGGGCTTCCTGCACT GAGGCCAATTGCACCTTACAATTTTCAGTTCTTGAGTGCCCACCGGTTACTAATACACTTGCTA AAGGTGATGTCACACAAGGACTTCTTGAAACAACGCAGCGACTAGCCTCAGTTTGGTCAAAACG GGAGTTTCTGCAGTCCGTCCAATTGGAGCAGCAAGCTT Transcript length: 238 Transcript exons: 17953266-17953316,17954243-17954353,17954364-17954439 CTTGTACTTCAAGCACATTACCAATCAGCTTCTACAAATATTGGACGACAGATTTTTGCTATGG AAAGTGTTTCCTATACGTTGTCTTCGATGGATCTTACAATTTTCAGTTCTTGAGTGCCCACCGG TTACTAATACACTTGCTAAAGGTGATGTCACACAGAAACAACGCAGCGACTAGCCTCAGTTTGG TCAAAACGGGAGTTTCTGCAGTCCGTCCAATTGGAGCAGCAAGCTT Transcript length: 278 Transcript exons: 17953266-17953366,17954249-17954349,17954364-17954439 CTTGTACTTCAAGCACATTACCAATCAGCTTCTACAAATATTGGACGACAGGGCTTCCTGCACT GAGGCCAATTGCACAGTTATCGTTTTATCATTTGTCGGCTATGGAAAGTGTTTCCTATACGTTG TCTTCGATGGATCTTACAATTTTCAGTTCTTGAGTGCCCACCGGTTACTAATACACTTGCTAAA GGTGATGTCAGAAACAACGCAGCGACTAGCCTCAGTTTGGTCAAAACGGGAGTTTCTGCAGTCC GTCCAATTGGAGCAGCAAGCTT Transcript length: 279 Transcript exons: 17953266-17953365,17954261-17954439 CTTGTACTTCAAGCACATTACCAATCAGCTTCTACAAATATTGGACGACAGGGCTTCCTGCACT GAGGCCAATTGCACAGTTATCGTTTTATCATTTGTCGTTTCCTATACGTTGTCTTCGATGGATC TTACAATTTTCAGTTCTTGAGTGCCCACCGGTTACTAATACACTTGCTAAAGGTGATGTCACAC AAGGACTTCTTGAAACAACGCAGCGACTAGCCTCAGTTTGGTCAAAACGGGAGTTTCTGCAGTC CGTCCAATTGGAGCAGCAAGCTT Transcript length: 281 Transcript exons: 17953266-17953396,17954290-17954439 CTTGTACTTCAAGCACATTACCAATCAGCTTCTACAAATATTGGACGACAGGGCTTCCTGCACT GAGGCCAATTGCACAGTTATCGTTTTATCATTTGTCGGGGAAGTTTTTTCCCGCATCTGTCGAC GTGTACAATTTTCAGTTCTTGAGTGCCCACCGGTTACTAATACACTTGCTAAAGGTGATGTCAC ACAAGGACTTCTTGAAACAACGCAGCGACTAGCCTCAGTTTGGTCAAAACGGGAGTTTCTGCAG TCCGTCCAATTGGAGCAGCAAGCTT Transcript length: 288 Transcript exons: 17953266-17953366,17954253-17954439 CTTGTACTTCAAGCACATTACCAATCAGCTTCTACAAATATTGGACGACAGGGCTTCCTGCACT GAGGCCAATTGCACAGTTATCGTTTTATCATTTGTCGTGGAAAGTGTTTCCTATACGTTGTCTT CGATGGATCTTACAATTTTCAGTTCTTGAGTGCCCACCGGTTACTAATACACTTGCTAAAGGTG ATGTCACACAAGGACTTCTTGAAACAACGCAGCGACTAGCCTCAGTTTGGTCAAAACGGGAGTT TCTGCAGTCCGTCCAATTGGAGCAGCAAGCTT Transcript length: 301 Transcript exons: 17953266-17953291,17953293-17953393,17954266-17954439 CTTGTACTTCAAGCACATTACCAATCGCTTCTACAAATATTGGACGACAGGGCTTCCTGCACTG AGGCCAATTGCACAGTTATCGTTTTATCATTTGTCGGGGAAGTTTTTTCCCGCATCTGTCGACC TATACGTTGTCTTCGATGGATCTTACAATTTTCAGTTCTTGAGTGCCCACCGGTTACTAATACA CTTGCTAAAGGTGATGTCACACAAGGACTTCTTGAAACAACGCAGCGACTAGCCTCAGTTTGGT CAAAACGGGAGTTTCTGCAGTCCGTCCAATTGGAGCAGCAAGCTT Transcript length: 302 Transcript exons: 17953266-17953396,17954269-17954439 CTTGTACTTCAAGCACATTACCAATCAGCTTCTACAAATATTGGACGACAGGGCTTCCTGCACT GAGGCCAATTGCACAGTTATCGTTTTATCATTTGTCGGGGAAGTTTTTTCCCGCATCTGTCGAC GTGTACGTTGTCTTCGATGGATCTTACAATTTTCAGTTCTTGAGTGCCCACCGGTTACTAATAC ACTTGCTAAAGGTGATGTCACACAAGGACTTCTTGAAACAACGCAGCGACTAGCCTCAGTTTGG TCAAAACGGGAGTTTCTGCAGTCCGTCCAATTGGAGCAGCAAGCTT Transcript length: 332 Transcript exons: 17953266-17953406,17954249-17954439 CTTGTACTTCAAGCACATTACCAATCAGCTTCTACAAATATTGGACGACAGGGCTTCCTGCACT GAGGCCAATTGCACAGTTATCGTTTTATCATTTGTCGGGGAAGTTTTTTCCCGCATCTGTCGAC GTGGATTATCAGGGCTATGGAAAGTGTTTCCTATACGTTGTCTTCGATGGATCTTACAATTTTC AGTTCTTGAGTGCCCACCGGTTACTAATACACTTGCTAAAGGTGATGTCACACAAGGACTTCTT GAAACAACGCAGCGACTAGCCTCAGTTTGGTCAAAACGGGAGTTTCTGCAGTCCGTCCAATTGG AGCAGCAAGCTT Transcript length: 632 Transcript exons: 17953266-17953405,17953728-17954004,17954225-17954439 CTTGTACTTCAAGCACATTACCAATCAGCTTCTACAAATATTGGACGACAGGGCTTCCTGCACT GAGGCCAATTGCACAGTTATCGTTTTATCATTTGTCGGGGAAGTTTTTTCCCGCATCTGTCGAC GTGGATTATCAGATTTGCTGTTAAGTGAAGTAACACCTCATGTCCTAGCTCAAGTTAGGAGGTT ACTAAACTCAAAGATAGGTGCTATTGAGGTGGATACATTTCAGTTGGACCCTACAACCCGGATT TGGTCGAAAACTATGGAAGCAGTGACAGATCCGTATGCTGTTGAGAAAATGGCTGAACAACTTT TACATCAGCTATATGCTGAGCATCCAAGTGATGTTGAAGCTTTCTGGACTATTTGGACTTTGTT TCATCGCAATGTAATACATCAGGCATCAGTGAGGTCAATATTCGTTGACAAATTTTTGCTATGG AAAGTGTTTCCTATACGTTGTCTTCGATGGATCTTACAATTTTCAGTTCTTGAGTGCCCACCGG TTACTAATACACTTGCTAAAGGTGATGTCACACAAGGACTTCTTGAAACAACGCAGCGACTAGC CTCAGTTTGGTCAAAACGGGAGTTTCTGCAGTCCGTCCAATTGGAGCAGCAAGCTT Transcript length: 647 Transcript exons: 17953266-17953405,17953728-17954096,17954302-17954439 CTTGTACTTCAAGCACATTACCAATCAGCTTCTACAAATATTGGACGACAGGGCTTCCTGCACT GAGGCCAATTGCACAGTTATCGTTTTATCATTTGTCGGGGAAGTTTTTTCCCGCATCTGTCGAC GTGGATTATCAGATTTGCTGTTAAGTGAAGTAACACCTCATGTCCTAGCTCAAGTTAGGAGGTT ACTAAACTCAAAGATAGGTGCTATTGAGGTGGATACATTTCAGTTGGACCCTACAACCCGGATT TGGTCGAAAACTATGGAAGCAGTGACAGATCCGTATGCTGTTGAGAAAATGGCTGAACAACTTT TACATCAGCTATATGCTGAGCATCCAAGTGATGTTGAAGCTTTCTGGACTATTTGGACTTTGTT TCATCGCAATGTAATACATCAGGCATCAGTGAGGCAAGCAAAATGTTTTCTATGGCAGCTTGAT TCTTTCTTTAGATACCCCTTTTTCTTCTTTCATTTCCATCCTAATGCTGTGAAACAATGCGTTC TTGAGTGCCCACCGGTTACTAATACACTTGCTAAAGGTGATGTCACACAAGGACTTCTTGAAAC AACGCAGCGACTAGCCTCAGTTTGGTCAAAACGGGAGTTTCTGCAGTCCGTCCAATTGGAGCAG CAAGCTT
Genomic sequence	CTTGTACTTCAAGCACATTACCAATCAGCTTCTACAAATATTGGACGACAGGGCTTCCTGCACT GAGGCCAATTGCACAGTTATCGTTTTATCATTTGTCGGGGAAGTTTTTTCCCGCATCTGTCGAC GTGGATTATCAGGTATATATGCTTCTCGAACTGTATTTCAGCTCTATTTTTTTCGTTTCTCTGA GTGTTGTGAATTATTTTTTTCGTTTCTCTAAGTGTTGTGAATTACCATGGACTTGCTTGTATTC ATTTTCTGTCCCTTGTAATGGGAAGTTGTGAATTGTGAGAATGTAGATCAAATCATCATGACCG ATGGGGAAAAGGATGTGCCATAATATAAACTACATTGCACTCTGTTATTGACTGATAATCTCTG GATGGTGTGTTTATTTATTGAAGTTATTTTCATGACACAAATCATGATGTACTTTAGATTATAT TTTTTAATCTGCAGATTTGCTGTTAAGTGAAGTAACACCTCATGTCCTAGCTCAAGTTAGGAGG TTACTAAACTCAAAGATAGGTGCTATTGAGGTGGATACATTTCAGTTGGACCCTACAACCCGGA TTTGGTCGAAAACTATGGAAGCAGTGACAGATCCGTATGCTGTTGAGAAAATGGCTGAACAACT TTTACATCAGCTATATGCTGAGCATCCAAGTGATGTTGAAGCTTTCTGGACTATTTGGACTTTG TTTCATCGCAATGTAATACATCAGGCATCAGTGAGGCAAGCAAAATGTTTTCTATGGCAGCTTG ATTCTTTCTTTAGATACCCCTTTTTCTTCTTTCATTTCCATCCTAATGCTGTGAAACAATGCGG TTCGACAGAAGTGAGCATGGAACTGGAACTATGATTTGTTTTTTTTTCAAAGGGAAACAGATTT GCCGTCTATTGAGTTTTCCCAGTTTAGTCTACTTTGCAAATAATTGTGTAATTTGTTTTTCAGG TCAATATTCGTTGACAAATTTTTGCTATGGAAAGTGTTTCCTATACGTTGTCTTCGATGGATCT TACAATTTTCAGTTCTTGAGTGCCCACCGGTTACTAATACACTTGCTAAAGGTGATGTCACACA AGGACTTCTTGAAACAACGCAGCGACTAGCCTCAGTTTGGTCAAAACGGGAGTTTCTGCAGTCC GTCCAATTGGAGCAGCAAGCTT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.749094531

Conservation Information
Conserved circRNAs	NA
PMCS	0.749094531

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						response to drought stress

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	response to drought stress

			
						 Other Information
					
						References
						Sun et al., 2016;Wang et al., 2014;Chu et al., 2017;Pan et al., 2017;Chen et al., 2017a;Liu et al., 2017;Zhang et al., 2019

circRNA

Detail information of AT3G48470_circ_g.3

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