Detail information of AT2G24690_circ_g.3


General Information
CircRNA Name AT2G24690_circ_g.3
ID in PlantcircBase ath_circ_014686
Alias NA
Organism Arabidpsis thaliana
Position chr2: 10500863-10502367  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene AT2G24690
Parent gene annotation Transcriptional factor B3 family protein
Parent gene strand -
Alternative splicing AT2G24690_circ_g.1 AT2G24690_circ_g.2
Support reads 3
Tissues aerial
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G24690.1:4
AT2G24690.2:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAGAAGATTTGCAAGCCACTTAGAACCATCTTTACCCACCAAATATATCTTCCCAGGCTTGTT
AATCCCATTCTCCCTCGTGAATTGCATCGGAAGACGcaacgcatttgtgtgtagacttgaagtt
gtgacatgggatacaaaacaagagtggtctgataaataatctgcttccatttctggattgttct
tcttcact
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1242
Transcript exons: 10500863-10500981,10501083-10501169,10501243-10501813,10
501903-10502367
CAACGCATTTGTGTGTAGACTTGAAGTTGTGACATGGGATACAAAACAAGAGTGGTCTGATAAA
TAATCTGCTTCCATTTCTGGATTGTTCTTCTTCACTTTCTTCTTACTTGGAGGCTCAAAGTTGT
CATGAGCATAACCATCATATGACGAAAATGTTACAGCTTCTTTTCTTATATGCGGATTTATTTT
CATCGAAATGTTACTGATGTTGTCATGATCATAGTTACTGCTTGGAGCCAGTAAATCTTGAACC
CCACAACAATTGGATCCCAAATCTGAGACCCGCAACATATTATCTCCTTTATGTCTGAAATTGA
TGACCTCACCGATGCTAAGATCATGAGCAACCTGGCTAACTATATCACGTAGAGGTGTTAATGC
CATGAATTGGTTTTGGATTGCTGAAGATGATTCTCTACTTCTAGGAGGATACTTTCTGCTTGCT
TCTCTGTTGTTCTCTACTTTCTTAGTCATGTTTCCACTACTAGGTTTTATGGAAAGAGATTCCT
TGGAAAACTCACTTTGCCCTTTACCACTGCTAGACTTTATACTGAGCACAGGAGTCCTGTCTTC
CCATATTGGCTCCAATGTAATGGAATCACCCGTCTTTAAGCCATTTGCTTTAGCAAAATCTTTC
CAACCCTTTCCCAAACTCATTCTTCCCTTTTTTTCTAGTAGAAGACTTGCCATCCACTTTGCAC
CATCTGTACCTAAAAGAGTTATCTCCCCGGGCTTGTTCATGCTATTCTCCGTCATGAATTGCAA
CGGAAGCCGTAGTCTACCATGTTCGAGACTATCAGGCGTGATTGTTACTGTCAAGGTGCAGTTC
TGGCTTGGTGAAGTTGAATCTTTGCATCTCAGATGATTACCCTCTCTCTTCCATGTGCTGCTTT
CATCTTTGTTGTTGTCATCTTTAACGATCTTTTCTTGGCTACTAGGCTCTGCGGGAAGAGACTC
TTTCGAAGACTCTTCTCCTACTCTTGTGTCAGTGTTGTACTCTTCAAAACACAAACTGAGCACA
GGAGTTGTGTCTTCCCACAGTAACTTGAACGTATAGGTATCACCAGTCTTTAAACCGTTTGCTT
TAACAAAACTTTTCCAACCATCTCCTAAAGTCATTCTTCCTCTGTTGTTTTCCAAAAGAAGATT
TGCAAGCCACTTAGAACCATCTTTACCCACCAAATATATCTTCCCAGGCTTGTTAATCCCATTC
TCCCTCGTGAATTGCATCGGAAGACG

Genomic sequence CAACGCATTTGTGTGTAGACTTGAAGTTGTGACATGGGATACAAAACAAGAGTGGTCTGATAAA
TAATCTGCTTCCATTTCTGGATTGTTCTTCTTCACTTTCTTCTTACTTGGAGGCTCTGTATCAG
AAACACCCCACATGTTAAAACCTCAGATGCTTTCACCGAAGTAAGAAATCTTGGACTCATCCAT
ATATGTACTATAATAAAACTGAATATACCAAAGTTGTCATGAGCATAACCATCATATGACGAAA
ATGTTACAGCTTCTTTTCTTATATGCGGATTTATTTTCATCGAAATGTTACCTGTATAAGAGAA
TATCCTCAGACTGCATTTAACAATCTTGTCAACGTTACAGCTTTAAATCATCAAACTTACTGAT
GTTGTCATGATCATAGTTACTGCTTGGAGCCAGTAAATCTTGAACCCCACAACAATTGGATCCC
AAATCTGAGACCCGCAACATATTATCTCCTTTATGTCTGAAATTGATGACCTCACCGATGCTAA
GATCATGAGCAACCTGGCTAACTATATCACGTAGAGGTGTTAATGCCATGAATTGGTTTTGGAT
TGCTGAAGATGATTCTCTACTTCTAGGAGGATACTTTCTGCTTGCTTCTCTGTTGTTCTCTACT
TTCTTAGTCATGTTTCCACTACTAGGTTTTATGGAAAGAGATTCCTTGGAAAACTCACTTTGCC
CTTTACCACTGCTAGACTTTATACTGAGCACAGGAGTCCTGTCTTCCCATATTGGCTCCAATGT
AATGGAATCACCCGTCTTTAAGCCATTTGCTTTAGCAAAATCTTTCCAACCCTTTCCCAAACTC
ATTCTTCCCTTTTTTTCTAGTAGAAGACTTGCCATCCACTTTGCACCATCTGTACCTAAAAGAG
TTATCTCCCCGGGCTTGTTCATGCTATTCTCCGTCATGAATTGCAACGGAAGCCGCTATAAAAT
GTATATGAACAGAGAATTTGTTTTCAAAAAGCACCTTTTCAATGGGACGAAATTGAACAAGACT
TGATTGTTGAACTTACTAGTCTACCATGTTCGAGACTATCAGGCGTGATTGTTACTGTCAAGGT
GCAGTTCTGGCTTGGTGAAGTTGAATCTTTGCATCTCAGATGATTACCCTCTCTCTTCCATGTG
CTGCTTTCATCTTTGTTGTTGTCATCTTTAACGATCTTTTCTTGGCTACTAGGCTCTGCGGGAA
GAGACTCTTTCGAAGACTCTTCTCCTACTCTTGTGTCAGTGTTGTACTCTTCAAAACACAAACT
GAGCACAGGAGTTGTGTCTTCCCACAGTAACTTGAACGTATAGGTATCACCAGTCTTTAAACCG
TTTGCTTTAACAAAACTTTTCCAACCATCTCCTAAAGTCATTCTTCCTCTGTTGTTTTCCAAAA
GAAGATTTGCAAGCCACTTAGAACCATCTTTACCCACCAAATATATCTTCCCAGGCTTGTTAAT
CCCATTCTCCCTCGTGAATTGCATCGGAAGACG
Conservation Information
Conserved circRNAs NA
PMCS 0.294961382
Functional Information
Coding potential Y
Potential coding position 10502359-10500865(-)
Potential amino acid sequence MQFTRENGINKPGKIYLVGKDGSKWLANLLLENNRGRMTLGDGWKSFVKANGLKTGDTYTFKLL
WEDTTPVLSLCFEEYNTDTRVGEESSKESLPAEPSSQEKIVKDDNNKDESSTWKREGNHLRCKD
STSPSQNCTLTVTITPDSLEHGRLRLPLQFMTENSMNKPGEITLLGTDGAKWMASLLLEKKGRM
SLGKGWKDFAKANGLKTGDSITLEPIWEDRTPVLSIKSSSGKGQSEFSKESLSIKPSSGNMTKK
VENNREASRKYPPRSRESSSAIQNQFMALTPLRDIVSQVAHDLSIGEVINFRHKGDNMLRVSDL
GSNCCGVQDLLAPSSNYDHDNISNISMKINPHIRKEAVTFSSYDGYAHDNFEPPSKKKVKKNNP
EMEADYLSDHSCFVSHVTTSSLHTNALRLPMQFTRENGINKPGKIYLVGKDGSKWLANLLLENN
RGRMTLGDGWKSFVKANGLKTGDTYTFKLLWEDTTPVLSLCFEEYNTDTRVGEESSKESLPAEP
SSQEKIVKDDNNKDESSTWKREGNHLRCKDSTSPSQNCTLTVTITPDSLEHGRLRLPLQFMTEN
SMNKPGEITLLGTDGAKWMASLLLEKKGRMSLGKGWKDFAKANGLKTGDSITLEPIWEDRTPVL
SIKSSSGKGQSEFSKESLSIKPSSGNMTKKVENNREASRKYPPRSRESSSAIQNQFMALTPLRD
IVSQVAHDLSIGEVINFRHKGDNMLRVSDLGSNCCGVQDLLAPSSNYDHDNISNISMKINPHIR
KEAVTFSSYDGYAHDNFEPPSKKKVKKNNPEMEADYLSDHSCFVSHVTTSSLHTNALRLPMQFT
RENGINKPGKIYLVGKDGSKWLANLLLENNRGRMTLGDGWKSFVKANGLKTGDTYTFKLLWEDT
TPVLSLCFEEYNTDTRVGEESSKESLPAEPSSQEKIVKDDNNKDESSTWKREGNHLRCKDSTSP
SQNCTLTVTITPDSLEHGRLRLPLQFMTENSMNKPGEITLLGTDGAKWMASLLLEKKGRMSLGK
GWKDFAKANGLKTGDSITLEPIWEDRTPVLSIKSSSGKGQSEFSKESLSIKPSSGNMTKKVENN
REASRKYPPRSRESSSAIQNQFMALTPLRDIVSQVAHDLSIGEVINFRHKGDNMLRVSDLGSNC
CGVQDLLAPSSNYDHDNISNISMKINPHIRKEAVTFSSYDGYAHDNFEPPSKKKVKKNNPEMEA
DYLSDHSCFVSHVTTSSLHTNALRLPMQFTRENGINKPGKIYLVGKDGSKWLANLLLENNRGRM
TLGDGWKSFVKANGLKTGDTYTFKLLWEDTTPVLSLCFEEYNTDTRVGEESSKESLPAEPSSQE
KIVKDDNNKDESSTWKREGNHLRCKDSTSPSQNCTLTVTITPDSLEHGRLRLPLQFMTENSMNK
PGEITLLGTDGAKWMASLLLEKKGRMSLGKGWKDFAKANGLKTGDSITLEPIWEDRTPVLSIKS
SSGKGQSEFSKESLSIKPSSGNMTKKVENNREASRKYPPRSRESSSAIQNQFMALTPLRDIVSQ
VAHDLSIGEVINFRHKGDNMLRVSDLGSNCCGVQDLLAPSSNYDHDNISNISMKINPHIRKEAV
TFSSYDGYAHDNFEPPSKKKVKKNNPEMEADYLSDHSCFVSHVTTSSLHTNAL(-)
Sponge-miRNAs ath-miR5021
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017