Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT2G24690_circ_g.3 |
ID in PlantcircBase | ath_circ_014686 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr2: 10500863-10502367 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder |
Parent gene | AT2G24690 |
Parent gene annotation |
Transcriptional factor B3 family protein |
Parent gene strand | - |
Alternative splicing | AT2G24690_circ_g.1 AT2G24690_circ_g.2 |
Support reads | 3 |
Tissues | aerial |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT2G24690.1:4 AT2G24690.2:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.294961382 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
10502359-10500865(-) |
Potential amino acid sequence |
MQFTRENGINKPGKIYLVGKDGSKWLANLLLENNRGRMTLGDGWKSFVKANGLKTGDTYTFKLL WEDTTPVLSLCFEEYNTDTRVGEESSKESLPAEPSSQEKIVKDDNNKDESSTWKREGNHLRCKD STSPSQNCTLTVTITPDSLEHGRLRLPLQFMTENSMNKPGEITLLGTDGAKWMASLLLEKKGRM SLGKGWKDFAKANGLKTGDSITLEPIWEDRTPVLSIKSSSGKGQSEFSKESLSIKPSSGNMTKK VENNREASRKYPPRSRESSSAIQNQFMALTPLRDIVSQVAHDLSIGEVINFRHKGDNMLRVSDL GSNCCGVQDLLAPSSNYDHDNISNISMKINPHIRKEAVTFSSYDGYAHDNFEPPSKKKVKKNNP EMEADYLSDHSCFVSHVTTSSLHTNALRLPMQFTRENGINKPGKIYLVGKDGSKWLANLLLENN RGRMTLGDGWKSFVKANGLKTGDTYTFKLLWEDTTPVLSLCFEEYNTDTRVGEESSKESLPAEP SSQEKIVKDDNNKDESSTWKREGNHLRCKDSTSPSQNCTLTVTITPDSLEHGRLRLPLQFMTEN SMNKPGEITLLGTDGAKWMASLLLEKKGRMSLGKGWKDFAKANGLKTGDSITLEPIWEDRTPVL SIKSSSGKGQSEFSKESLSIKPSSGNMTKKVENNREASRKYPPRSRESSSAIQNQFMALTPLRD IVSQVAHDLSIGEVINFRHKGDNMLRVSDLGSNCCGVQDLLAPSSNYDHDNISNISMKINPHIR KEAVTFSSYDGYAHDNFEPPSKKKVKKNNPEMEADYLSDHSCFVSHVTTSSLHTNALRLPMQFT RENGINKPGKIYLVGKDGSKWLANLLLENNRGRMTLGDGWKSFVKANGLKTGDTYTFKLLWEDT TPVLSLCFEEYNTDTRVGEESSKESLPAEPSSQEKIVKDDNNKDESSTWKREGNHLRCKDSTSP SQNCTLTVTITPDSLEHGRLRLPLQFMTENSMNKPGEITLLGTDGAKWMASLLLEKKGRMSLGK GWKDFAKANGLKTGDSITLEPIWEDRTPVLSIKSSSGKGQSEFSKESLSIKPSSGNMTKKVENN REASRKYPPRSRESSSAIQNQFMALTPLRDIVSQVAHDLSIGEVINFRHKGDNMLRVSDLGSNC CGVQDLLAPSSNYDHDNISNISMKINPHIRKEAVTFSSYDGYAHDNFEPPSKKKVKKNNPEMEA DYLSDHSCFVSHVTTSSLHTNALRLPMQFTRENGINKPGKIYLVGKDGSKWLANLLLENNRGRM TLGDGWKSFVKANGLKTGDTYTFKLLWEDTTPVLSLCFEEYNTDTRVGEESSKESLPAEPSSQE KIVKDDNNKDESSTWKREGNHLRCKDSTSPSQNCTLTVTITPDSLEHGRLRLPLQFMTENSMNK PGEITLLGTDGAKWMASLLLEKKGRMSLGKGWKDFAKANGLKTGDSITLEPIWEDRTPVLSIKS SSGKGQSEFSKESLSIKPSSGNMTKKVENNREASRKYPPRSRESSSAIQNQFMALTPLRDIVSQ VAHDLSIGEVINFRHKGDNMLRVSDLGSNCCGVQDLLAPSSNYDHDNISNISMKINPHIRKEAV TFSSYDGYAHDNFEPPSKKKVKKNNPEMEADYLSDHSCFVSHVTTSSLHTNAL(-) |
Sponge-miRNAs | ath-miR5021 |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |