Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d011233_circ_g.2 |
ID in PlantcircBase | zma_circ_009719 |
Alias | Zm08circ00054, zma_circ_0002796, GRMZM2G470292_C1 |
Organism | Zea mays |
Position | chr8: 144120565-144121377 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | CIRI2, find_circ |
Parent gene | Zm00001d011233 |
Parent gene annotation |
SIT4 phosphatase-associated family protein |
Parent gene strand | + |
Alternative splicing | Zm00001d011233_circ_g.1 |
Support reads | NA |
Tissues | leaf, endosperm, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d011233_T031:3 Zm00001d011233_T014:3 Zm00001d011233_T027:3 Zm00001d011233_T008:3 Zm00001d011233_T045:3 Zm00001d011233_T021:3 Zm00001d011233_T004:3 Zm00001d011233_T018:3 Zm00001d011233_T011:3 Zm00001d011233_T032:3 Zm00001d011233_T005:2 Zm00001d011233_T007:3 Zm00001d011233_T001:3 Zm00001d011233_T009:3 Zm00001d011233_T041:3 Zm00001d011233_T033:3 Zm00001d011233_T048:3 Zm00001d011233_T050:2 Zm00001d011233_T040:3 Zm00001d011233_T003:3 Zm00001d011233_T038:3 Zm00001d011233_T044:3 Zm00001d011233_T047:3 Zm00001d011233_T046:3 Zm00001d011233_T006:3 Zm00001d011233_T037:3 Zm00001d011233_T020:3 Zm00001d011233_T019:3 Zm00001d011233_T026:3 Zm00001d011233_T023:3 Zm00001d011233_T029:3 Zm00001d011233_T010:3 Zm00001d011233_T036:3 Zm00001d011233_T028:3 Zm00001d011233_T016:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.210452036 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
144121059-144121374(+) 144120584-144121296(-) |
Potential amino acid sequence |
MASPETVDGMLESLGNLLNLLDTSAAESVLPTTYGCLRPPLGKHRLKDSPEVHANAAEILCAVT RCAPPSLAAKICSPSFVRRLFHHALEESRPKSVLLHSLSVCISLLDPKRLASASYQAFKSNLSH GALVMASPETVDGMLESLGNLLNLLDTSAAESVLPTTYGCLRPPLGKHRLKDSPEVHANAAEIL CAVTRCAPPSLAAKICSPSFVRRLFHHALEESRPKSVLLHSLSVCISLLDPKRLASASYQAFKS NLSHGALVMASPETVDGMLESLGNLLNLLDTSAAESVLPTTYGCLRPPLGKHRLKDSPEVHANA AEILCAVTRCAPPSLAAKICSPSFVRRLFHHALEESRPKSVLLHSLSVCISLLDPKRLASASYQ AFKSNLSHGALVMASPETVDGMLESLGNLLNLLDTSAAESVLPTTYGCLRPPLGKHRLK(+) MHFRRILQTMFSKRWAQTSISCWQHTFSSRCVQ*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Han et al., 2020; Ma et al., 2021b;Zhang et al., 2019 |