Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d002905_circ_g.1 |
ID in PlantcircBase | zma_circ_007113 |
Alias | zma_circ_0000992 |
Organism | Zea mays |
Position | chr2: 26335468-26338596 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d002905 |
Parent gene annotation |
Protein kinase superfamily protein |
Parent gene strand | + |
Alternative splicing | Zm00001d002905_circ_ag.1 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d002905_T003:3 Zm00001d002905_T002:1 Zm00001d002905_T009:1 Zm00001d002905_T004:1 Zm00001d002905_T008:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.619225202 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
26335631-26338593(+) 26337310-26338590(-) |
Potential amino acid sequence |
MVLRTTLHSRAYVLGALVKPKFTLAVECRQPGASSRSHQPKTASASTRHRRPTHRPKSNEEAGA LSSRLHPPPEGEPPSPVLIHQADKGGSNKGTPGGKGWQEIGIIEEEGLMDEEDHTRIVPHKCYC FLAFLLGFVALFSFFALVLWGASRSQKPRIVMGTIRFDNFIIQAGTDASLVPTDMATTNSTVRF TYRNRGTFFGIHVTADPFQLSYSQLTLASGDLHNFYQPRSSSRTVSVAVVGNKVPLYGGGPTLT AAPAAGGKGQQQASAKVASVPMVLRTTLHSRAYVLGALVKPKFTLAVECRQPGASSRSHQPKTA SASTRHRRPTHRPKSNEEAGALSSRLHPPPEGEPPSPVLIHQADKGGSNKGTPGGKGWQEIGII EEEGLMDEEDHTRIVPHKCYCFLAFLLGFVALFSFFALVLWGASRSQKPRIVMGTIRFDNFIIQ AGTDASLVPTDMATTNSTVRFTYRNRGTFFGIHVTADPFQLSYSQLTLASGDLHNFYQPRSSSR TVSVAVVGNKVPLYGGGPTLTAAPAAGGKGQQQASAKVASVPMVLRTTLHSRAYVLGALVKPKF TLAVECRQPGASSRSHQPKTASASTRHRRPTHRPKSNEEAGALSSRLHPPPEGEPPSPVLIHQA DKGGSNKGTPGGKGWQEIGIIEEEGLMDEEDHTRIVPHKCYCFLAFLLGFVALFSFFALVLWGA SRSQKPRIVMGTIRFDNFIIQAGTDASLVPTDMATTNSTVRFTYRNRGTFFGIHVTADPFQLSY SQLTLASGDLHNFYQPRSSSRTVSVAVVGNKVPLYGGGPTLTAAPAAGGKGQQQASAKVASVPM VLRTTLHSRAYVLGALVKPKFTLAVECRQPGASSRSHQPKTASASTRHRRPTHRPKSNEEAGAL SSRLHPPPEGEPPSPVLIHQADKGGSNKGTPGGKGWQEIGIIEEEGLMDEEDHTRIVPHKCYCF LAFLLGFVALFSFFALVLWGASRSQKPRIVMGTIRFDNFIIQAGTDASLVPTDMATTNSTVRFT YRNRGTFFGIHVTADPFQLSYSQLTLASGD(+) MQTAAQRSGLLVGLGTVGRSSVPRGGRRRLRLVRARRCPWLPALDGERELGLDQRAQHVGPRVQ RGPQHHGHRCHLGAGLLLPLAPGRRRRRQRGSAAVQRHLVADHGDADGAAAAARLVEVVEVS*( -) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |