Detail information of Zm00001d002905_circ_g.1


General Information
CircRNA Name Zm00001d002905_circ_g.1
ID in PlantcircBase zma_circ_007113
Alias zma_circ_0000992
Organism Zea mays
Position chr2: 26335468-26338596  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method find_circ
Parent gene Zm00001d002905
Parent gene annotation Protein kinase superfamily protein
Parent gene strand +
Alternative splicing Zm00001d002905_circ_ag.1
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d002905_T003:3
Zm00001d002905_T002:1
Zm00001d002905_T009:1
Zm00001d002905_T004:1
Zm00001d002905_T008:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGATTCACCTACCGTAACAGGGGCACCTTCTTCGGGATCCACGTCACCGCCGACCCGTTCCAG
CTCTCCTACAGCCAGCTCACGCTCGCGTCAGGAGACctccacaacttctaccagcctcgcagca
gcagccgcaccgtcagcgtcgccgtggtcggcaacaaggtgccgctgtacggcggcggacccac
gctgacgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCCACAACTTCTACCAGCCTCGCAGCAGCAGCCGCACCGTCAGCGTCGCCGTGGTCGGCAACA
AGGTGCCGCTGTACGGCGGCGGACCCACGCTGACGGCGGCGCCGGCGGCCGGGGGCAAGGGGCA
GCAGCAGGCCAGCGCCAAGGTGGCATCGGTGCCCATGGTGCTGAGGACCACGCTGCACTCGCGG
GCCTACGTGCTGGGCGCGCTGGTCAAGCCCAAGTTCACGCTCGCCGTCGAGTGCAGGGTGCTCA
TGAACCCAAACAAGCAGAACAAGCCCATCTCGCTCGGGAACGCCTGCCACTACTCATGATATAT
TTAGCCTCTCATACTAGCTGCTCAACATCACCATGCCCATGCATCCATCTCCTACCTACCTCTC
AATTGTACTGTAATGGAGTATTTATTGATTTATTTATGCTTTGCTTCGTCTTCTCTTCTCTGTA
TTGATTTTCTTTGTTCATTCCTTCTACCTTTCGTATGCATATTTTGGGGTTATTTTCGTCTATT
TTAATAGTGATGACGGTGAGGCTAGGTATGTCTTTCAAGAGTCGTCAGAAGGCGGAAACTTTAC
ATGTAAACTCAAAACATTTAATCTAAATTATGGAATAGTCCAATGAAATGAAAAAATCTACCGC
CAATATACCGTTATTCACACACAAGCCCTAGGACCCTAGCTGTATATAACCCATTTTTTAGTAA
CATAACTTCATAAAAGAAGATGTAACAAAAGCTGTGTAATTCCTATCATGAGGTAACAAAATAA
TTATACTTCCTAATGATCATATAATTTATTTTATAAAGGCGAGCCTCTATGGGAAATTTGCCAG
TTTATTTATATACCATGCACCCGCGAGGATTTATTTCACTGCCTGTGGATCAAAATAAAATATC
AATGTGTTTTATAGAAAACAAAATAAAATATAGTTAAAATATCAGACTATTCACGAATTGAGAC
AAAAAACAATAGGGTCCATCTGTGTCGGCCCAACAAATGGCCCAAACTGTACAATTGCCCCATC
CGCAGTCCGTGCGGTCCGCTCGCCGTACCCTTCTTTATGTTATTGGGCAAAAATCTTCACCCAA
TTGGTAAACGGGTATTAAAACGTTCCACCTTCATTCATACCTGTTAACCCGTAGATATAAAATA
CCCAATATAAACTTAGCCCAAACATTAACTTAGATTTAGTCATTCATCTTTTTTACTATTTAAT
AACCTTTTAGGCCATTATGTCATAGAAGGCTTAACTACAATTTAATGACCATGTAATGGAACAT
GTAATTCACCCAATGTGTATTGAATGGATGGTTAAATGATGCTGGAAATTTTGTAATGGTATTT
AGATGAATATACTTTACATTTGTATAATATAATATTTTGATAGATGTTTAATTTTTGTGGGTAC
GGGTGACCCGATGGGTGACCTATACCCACGTGGGTATGAGTATGAGGGTAAATCCATACCAACC
AATGTATATGAGTGATCAGATATGATTATTTTTTTGTTGTGGATATGAGTATATGGTGGTAATA
TCTTGTAGGTATCTATTGCCATCTCTAGCCTGAGGTCCTGAGCGGCGTGCGGCGCTTCTCCAAA
TCTCCCATCCTATCGACTCACGTTCCTGCGTTCGAAACCCTATTTCCGTCCGAGGCGGCGGCGG
CGGCGGACCGGCAGCTCCCCGCTCGGCTTGTATTGGGCGGCTGTCGCGCTGCAGCAGCCAGGGG
CATCGTCGCGCTCGCACCAACCGAAGACGGCGTCGGCCTCCACGCGGCACCGACGACCGACCCA
CCGTCCCAAGTCCAACGAGGAGGCCGGAGCGCTGAGCAGCCGTCTGCATCCTCCTCCCGAAGGT
GAGCCCCCATCCCCAGTCCTAATTCACCAGGTACAGGCCGATTAGCATATTAACAGGCCCACAC
ACAACCCATCACCGCTAAACCCTTTCTTTACAACCAACACAGCAGGCGATATATCACACACACA
CACAGGACAGGGCAACCCCACCGGTCGGTGTCCACCCCGGGAATTTGCCTGGCAAGGATTTGCC
TCCCCTGTGCGGGCTCCCCCAGGGTTTTCCTAGCCGGGCTGCCAAAGGAGGCCTTACAGTGACC
ATCACCCACTAGGTTTGCCTACCCCTTCTCTTCCCTTCATGTTGTGCGAACCTGAGCACCCAAA
CCCTAACTTAAGCTATTTTGCTATCTGTACTTGCATCTGATAGTTATCAATCTATGCGTCTTTC
TTGCCTACTGAATTAAATGTTGTGTCTGCCCCTAGTTCTTCTGCGGCGAACAAGGTCAATCCAG
GGCCGTGGTGCGGGTGCTGTTTTTTTTCCAACAAGTTTATGTTGGTCGCTCGACCGCTGCAGCA
ATGAAGATGTGAGTGCTCGTGTCTCACCGCCAACCTATAACTTTTTGTTGTTCCTTGTTACTTG
TATGCCGCGCCAACCTGTGCATCGTCTACTGTACATATACTTTTTTTCCTGAGCACCACTGTAC
GTATTTCGCACCATGCATTTCTTTGAAAAAAAATGATCCGACATGTGCTTCAGAAGTTGCTGTT
GGCCTGGGTTCAACCAGGCTGCCTTGGATGCGAGTCCTTGATTAATGATCTTTTTCAGTTTTGC
TGGATAATTTTCTCGAACTTTAACCATAAATGGGTGATCAAGTGTGAGGCCAACCATGTAGATT
TTTCAAGTTTATTTCTCAATTTTCAAGGCCGACAAGGGCGGCAGCAACAAGGGCACGCCGGGCG
GCAAGGGGTGGCAGGAGATCGGCATCATCGAGGAGGAAGGGCTCATGGACGAGGAGGACCACAC
GCGTATCGTGCCCCACAAGTGCTACTGCTTCCTCGCCTTCCTGCTCGGCTTCGTCGCGCTCTTC
TCCTTCTTCGCGCTCGTGCTCTGGGGCGCCAGCAGGTCCCAGAAGCCGCGCATCGTCATGGGCA
CCATCCGCTTCGACAACTTCATCATCCAGGCCGGCACCGACGCGTCGCTCGTGCCCACCGACAT
GGCCACCACCAACTCTACCGTCAGATTCACCTACCGTAACAGGGGCACCTTCTTCGGGATCCAC
GTCACCGCCGACCCGTTCCAGCTCTCCTACAGCCAGCTCACGCTCGCGTCAGGAGAC
Conservation Information
Conserved circRNAs NA
PMCS 0.619225202
Functional Information
Coding potential Y
Potential coding position 26335631-26338593(+)
26337310-26338590(-)
Potential amino acid sequence MVLRTTLHSRAYVLGALVKPKFTLAVECRQPGASSRSHQPKTASASTRHRRPTHRPKSNEEAGA
LSSRLHPPPEGEPPSPVLIHQADKGGSNKGTPGGKGWQEIGIIEEEGLMDEEDHTRIVPHKCYC
FLAFLLGFVALFSFFALVLWGASRSQKPRIVMGTIRFDNFIIQAGTDASLVPTDMATTNSTVRF
TYRNRGTFFGIHVTADPFQLSYSQLTLASGDLHNFYQPRSSSRTVSVAVVGNKVPLYGGGPTLT
AAPAAGGKGQQQASAKVASVPMVLRTTLHSRAYVLGALVKPKFTLAVECRQPGASSRSHQPKTA
SASTRHRRPTHRPKSNEEAGALSSRLHPPPEGEPPSPVLIHQADKGGSNKGTPGGKGWQEIGII
EEEGLMDEEDHTRIVPHKCYCFLAFLLGFVALFSFFALVLWGASRSQKPRIVMGTIRFDNFIIQ
AGTDASLVPTDMATTNSTVRFTYRNRGTFFGIHVTADPFQLSYSQLTLASGDLHNFYQPRSSSR
TVSVAVVGNKVPLYGGGPTLTAAPAAGGKGQQQASAKVASVPMVLRTTLHSRAYVLGALVKPKF
TLAVECRQPGASSRSHQPKTASASTRHRRPTHRPKSNEEAGALSSRLHPPPEGEPPSPVLIHQA
DKGGSNKGTPGGKGWQEIGIIEEEGLMDEEDHTRIVPHKCYCFLAFLLGFVALFSFFALVLWGA
SRSQKPRIVMGTIRFDNFIIQAGTDASLVPTDMATTNSTVRFTYRNRGTFFGIHVTADPFQLSY
SQLTLASGDLHNFYQPRSSSRTVSVAVVGNKVPLYGGGPTLTAAPAAGGKGQQQASAKVASVPM
VLRTTLHSRAYVLGALVKPKFTLAVECRQPGASSRSHQPKTASASTRHRRPTHRPKSNEEAGAL
SSRLHPPPEGEPPSPVLIHQADKGGSNKGTPGGKGWQEIGIIEEEGLMDEEDHTRIVPHKCYCF
LAFLLGFVALFSFFALVLWGASRSQKPRIVMGTIRFDNFIIQAGTDASLVPTDMATTNSTVRFT
YRNRGTFFGIHVTADPFQLSYSQLTLASGD(+)
MQTAAQRSGLLVGLGTVGRSSVPRGGRRRLRLVRARRCPWLPALDGERELGLDQRAQHVGPRVQ
RGPQHHGHRCHLGAGLLLPLAPGRRRRRQRGSAAVQRHLVADHGDADGAAAAARLVEVVEVS*(
-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b