Plant Circular RNA Database

Detail information of AT1G59820_circ_g.1

			
						 General Information
					
						CircRNA Name
						AT1G59820_circ_g.1
					
						ID in PlantcircBase
						ath_circ_008039
					
						Alias
						NA
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr1: 22011897-22015690  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ei-circRNA							
									
						Identification method
						PcircRNA_finder
					
						Parent gene
						
							AT1G59820						
					
						Parent gene annotation
						
							Phospholipid-transporting ATPase
							
						Parent gene strand
						+
					
						Alternative splicing
						
							AT1G59820_circ_g.2 AT1G59820_circ_g.3 AT1G59820_circ_g.4 AT1G59820_circ_g.5 AT1G59820_circ_g.6 AT1G59820_circ_g.7 AT1G59820_circ_g.8 AT1G59820_circ_g.9 AT1G59820_circ_g.10 AT1G59820_circ_g.11 AT1G59820_circ_g.12 						
					
						Support reads
						1
					
						Tissues
						leaf
					
						Exon boundary  
						
							No-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CA-TT							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT1G59820.1:12

General Information
CircRNA Name	AT1G59820_circ_g.1
ID in PlantcircBase	ath_circ_008039
Alias	NA
Organism	Arabidpsis thaliana
Position	chr1: 22011897-22015690 JBrowse»
Reference genome	TAIR10.38
Type	ei-circRNA
Identification method	PcircRNA_finder
Parent gene	AT1G59820
Parent gene annotation	Phospholipid-transporting ATPase
Parent gene strand	+
Alternative splicing	AT1G59820_circ_g.2 AT1G59820_circ_g.3 AT1G59820_circ_g.4 AT1G59820_circ_g.5 AT1G59820_circ_g.6 AT1G59820_circ_g.7 AT1G59820_circ_g.8 AT1G59820_circ_g.9 AT1G59820_circ_g.10 AT1G59820_circ_g.11 AT1G59820_circ_g.12
Support reads	1
Tissues	leaf
Exon boundary	No-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CA-TT The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT1G59820.1:12

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CCAGTCGACCCAGTTTATCAACCGCGATCTTAATATGTATCATGCTGAAACAAATACCCCTGCC
TCGGCCAGGACTTCTAATTTGAACGAGGAGCTTGGAcagggtaattcgatttctacaacaaagt
ataatgttttcacatttctgcccaagggtctgtttgaacaggtaaatacgcttggtttatcttt
gttgcttg

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CAGGGTAATTCGATTTCTACAACAAAGTATAATGTTTTCACATTTCTGCCCAAGGGTCTGTTTG
AACAGGTAAATACGCTTGGTTTATCTTTGTTGCTTGGATCTAGACTAGTGAAGGGTTGTTAGTT
TAGCTCCAGCATGTTATTTAGGAGTTCGTCTTTTCGGAACCCGAGAAGTTAAAATGTGAAATTT
TCCTATGGAATTAGGATTAGAATCGTAAATGAAGTGACAGCTGATGTACATTTCCAACATTCGC
AGTCCTTCCACAAGATTTTTCTGTTATTTTTAATCTTAGTTATAATGTGTTTCCTGACAGTTTA
GGCGCATAGCGAACATATACTTTCTTGGAATTTCGTGTCTATCAATGACACCAATAAGGTACGT
TAAATCCAAAAGCTGTGTTATAATGTGTTACTATTCATATAACACTCTTGTTCTGGTTTGATGG
AGATTTTGCTGATTAATTTATGAATGATAGATGCAGTTATTAACTAGATAGATTTTTTTTGTCC
TGCAGTCCTGTGAGTCCAATAACAAATGTAGCTCCACTGTCAATGGTGCTTCTTGTTTCTCTGA
TTAAAGAGGCTTTCGAAGACTGGGTAAGCTCGTCTGTTTTTCCTTTGCAGCAATATCCCATTTC
TCCTTGTTTTAGAATATAATTGTCTCAGCGCTTGAATAATCTGTGCAAGTTAGTAGATGCGTTG
GAGTCTCAGGACTCATTTGCGTCTCAACTACTAATTTTTTCTGCTGATAATCTGGTGCAGAAAC
GGTTTCAAAATGATATGTCCATAAATAATAGCACAGTGGAAATCTTACAAGATCAACAGTGGGT
ATCTATTCCGTGGAGAAAGTTGCAAGTTGGAGATATTGTCAAGGTTAGTCTTTCGTTGCTCTAA
AAGAGGTGAATCTATTCATGATTAGAGTCATTAGACAAAATTCACTTTGGTTACTTTTATCTAT
TGCTGTGTGTTTCAATGCATTTTTGGCATATATGTTTAGTTGTTTCCTGTTTGTAGGGCCTGCA
TTATAGTTGTTCTATTAGACTTCCACTACCTATATGTCTGTTATTGTACTGCAGTCAGCTACTG
CTTTCCACCGTGATAACTTCTTCCCAAATTCTAGAGGCCAGCAAAGCATGATTTTTGTCAACTA
TTTTCTCATTTTTTCCTGGCGTTCTGTTAGGTTCTGAACTTTAGTTACCATTATGGTTCGTCAA
GAATTTTTAGAACAGAGAGATAGATATAGATAGAGACCCACTTCTCAACCCAACCCCAGGATCC
ACCTAAGGTCATCTGCCTTTTTTTTTTACTTTCTTGGTACTTATACCACCGGCTGAGCTTGCTA
ATACAATCAGGATACTAACAGCACTCATTACAGTATTAAATAACTGAGTAAAGCAACACTACGC
GATTGCAGCCTCAGCTGCTCTTGAACTTTGCGTTTCCTTAGGTTGAGACACTGCTCTCTTCTTC
CTTTTCTTCAACTTATCTTGATATCTATTTTTCCTCCACACGTTGACCCTGCAATAGTTACGAC
GTTCATGGGATTAACAATGTTTACAGCATACCTTCTTTGCATTATTTCAAAGACTTGTTACCTT
TGAATTAAGATCTAAAATTGTTAAATAAGGTTATTGATTTTGCAGATAAAAAAAGATGGATTTT
TCCCAGCAGATATTCTTTTCATGTCCAGTACTAATTCTGATGGTATCTGCTACGTTGAGGTGCT
TCTTTTGACAGCCCCTTTAAAATTATATAGTACTGTCTTCTTGTCCAGGGCCAAAGCTGTTATC
AGTAGCATTATCTTACCTAGTGTGTGTTCATATGATTATTCCTTGTGTGTGCAGACTGCAAACC
TAGATGGAGAAACAAATTTGAAAATAAGAAAGGCACTTGAAAGGACATGGGATTACTTGGTACC
AGAGAAAGCTTATGAGTTTAAAGGTTAGCCTACGGCTTTGATTGTGGTCATGCAAGAATTTTTT
TGTAGTAGATGTGAACCTTTGCAGTGACATGTAGTACTTAATTCTCTATGAATTGCATTGCAAA
TAAAGTTTATTGCTTCAGTTGGTTTGGCATATCTTGTCGAAAAATTAGAAATGAATCTAGCTGA
AAAAGGTTCACCTGAGTCCGGTTACTATTTTAAGTTAACCTGCCAACTCGTTGCTTTTTCTTAT
ATCACAATCTGATGAACGGACAAGCATCACCAGAAAATGGAAGAAGAGTCTTATATAGCAGTCG
ATTCCATCATTTGTTTAGATGTTTGTCTGGCTCTTATGAAAAGAGAAGTTATTGTTAAATGCCT
GGTAGAATTTTTCTATAATTGTTTATTCTGACAGTTCCTGTAGCTCATTTCTCTTACCGATGAT
TATTTTCTTGTCTCTTATCCATTTTCTTCTGCGTAAGGACGCGATTTTTCCTTTTTTCTGATGG
TTCTTCATTTTATTCAACTTTTTTTTTATTTCAGTATGATTGTGTGGTAACCGTTAAATACATT
TCTTCACTTTCTCCAACATCTCTGTCTTTTACCATGCAGGTGAAATTCAGTGTGAGCAACCAAA
CAATTCTCTGTACACTTTTACTGGGAACCTTGTAGTCCAAAAGCAGACGTTACCTCTCTCTCCG
GACCAGCTTTTATTGCGTGTATGATTGACTATTTCTGCTGTTGGCTGTTTTTTCTTTTCTGTCT
TGTGTTTTTTTGCAATTTCATGATTTTCTTTGTCTTAGATAATGGTGATCAGCTTATGAGATAT
CTTGTATTTTTTGGCAACTTTTATATCCTCGGATTTTAACAGTATTTTGAGCAGATTTCCATGC
ATGTTGTGCAGAGCCTTTTATATCCTTAGATTTAATAATATTCTGAGACGTTTGATATCTGTAT
TATCAGGGATGCAGTCTTAGGAACACAGAATACATAGTTGGAGCTGTAGTTTTTACTGGTCATG
AGACGAAGGTAAGCTGTCATGAAGCTTGTTTTATGGGAAACTAGCTTTGCAAACGTGCGTTTTT
AGCTTTCAGGATTCATATATTTTAACCCTTCTATGCTTTCTACTTCGTTGTATAGTTACTATAC
ACATAGGATCTTAAGCTATTCTATGGTTAATTCTACATATGTAGGTGATGATGAATGCCATGAA
TGCTCCTTCCAAAAGAAGTACGCTGGAAAAGAAGCTTGACAAACTCATTATTACAATATTTTGT
GTCCTTGTCACGATGTGTCTGATTGGAGCTATAGGCTGGTGTGATTTCTCGTCAATCTTGTGAA
TTATTAACTCCTGCTTCGATTTGTTTATGCTCCAGTTCTCATGGCCTGTTGTGGTACTGTTATC
TATATTTGTTATTTTTACAGTTCAATTGTGACGGATCGTGAGGACAAATACTTGGGTCTTCATA
ACTCAGATTGGGAATACCGCAATGGACTCATGGTAAATAGTGTTGTATAGATGAAGTTGATTTC
CTTCTACTTCTGGATTTGCTGTTTTTTACCAAATTGCTACCCTCTGCTGCTACAGATAGGATTT
TTCACCTTTTTCACGCTAGTCACTCTGTTCTCATCAATTATACCAATCTCCCTTTATGTTTCTA
TTGAGGTATGTCTCTCCTAGTATCATCCTCTTCTAACTATCTGCACTACAAGGACTAGCAATTT
GAATGATCTCTATTTTGTTTCCTTACACCCAGATGATCAAGTTTATCCAGTCGACCCAGTTTAT
CAACCGCGATCTTAATATGTATCATGCTGAAACAAATACCCCTGCCTCGGCCAGGACTTCTAAT
TTGAACGAGGAGCTTGGA
						
					

			
		

Sequences
Splice junction sequence	CCAGTCGACCCAGTTTATCAACCGCGATCTTAATATGTATCATGCTGAAACAAATACCCCTGCC TCGGCCAGGACTTCTAATTTGAACGAGGAGCTTGGAcagggtaattcgatttctacaacaaagt ataatgttttcacatttctgcccaagggtctgtttgaacaggtaaatacgcttggtttatcttt gttgcttg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CAGGGTAATTCGATTTCTACAACAAAGTATAATGTTTTCACATTTCTGCCCAAGGGTCTGTTTG AACAGGTAAATACGCTTGGTTTATCTTTGTTGCTTGGATCTAGACTAGTGAAGGGTTGTTAGTT TAGCTCCAGCATGTTATTTAGGAGTTCGTCTTTTCGGAACCCGAGAAGTTAAAATGTGAAATTT TCCTATGGAATTAGGATTAGAATCGTAAATGAAGTGACAGCTGATGTACATTTCCAACATTCGC AGTCCTTCCACAAGATTTTTCTGTTATTTTTAATCTTAGTTATAATGTGTTTCCTGACAGTTTA GGCGCATAGCGAACATATACTTTCTTGGAATTTCGTGTCTATCAATGACACCAATAAGGTACGT TAAATCCAAAAGCTGTGTTATAATGTGTTACTATTCATATAACACTCTTGTTCTGGTTTGATGG AGATTTTGCTGATTAATTTATGAATGATAGATGCAGTTATTAACTAGATAGATTTTTTTTGTCC TGCAGTCCTGTGAGTCCAATAACAAATGTAGCTCCACTGTCAATGGTGCTTCTTGTTTCTCTGA TTAAAGAGGCTTTCGAAGACTGGGTAAGCTCGTCTGTTTTTCCTTTGCAGCAATATCCCATTTC TCCTTGTTTTAGAATATAATTGTCTCAGCGCTTGAATAATCTGTGCAAGTTAGTAGATGCGTTG GAGTCTCAGGACTCATTTGCGTCTCAACTACTAATTTTTTCTGCTGATAATCTGGTGCAGAAAC GGTTTCAAAATGATATGTCCATAAATAATAGCACAGTGGAAATCTTACAAGATCAACAGTGGGT ATCTATTCCGTGGAGAAAGTTGCAAGTTGGAGATATTGTCAAGGTTAGTCTTTCGTTGCTCTAA AAGAGGTGAATCTATTCATGATTAGAGTCATTAGACAAAATTCACTTTGGTTACTTTTATCTAT TGCTGTGTGTTTCAATGCATTTTTGGCATATATGTTTAGTTGTTTCCTGTTTGTAGGGCCTGCA TTATAGTTGTTCTATTAGACTTCCACTACCTATATGTCTGTTATTGTACTGCAGTCAGCTACTG CTTTCCACCGTGATAACTTCTTCCCAAATTCTAGAGGCCAGCAAAGCATGATTTTTGTCAACTA TTTTCTCATTTTTTCCTGGCGTTCTGTTAGGTTCTGAACTTTAGTTACCATTATGGTTCGTCAA GAATTTTTAGAACAGAGAGATAGATATAGATAGAGACCCACTTCTCAACCCAACCCCAGGATCC ACCTAAGGTCATCTGCCTTTTTTTTTTACTTTCTTGGTACTTATACCACCGGCTGAGCTTGCTA ATACAATCAGGATACTAACAGCACTCATTACAGTATTAAATAACTGAGTAAAGCAACACTACGC GATTGCAGCCTCAGCTGCTCTTGAACTTTGCGTTTCCTTAGGTTGAGACACTGCTCTCTTCTTC CTTTTCTTCAACTTATCTTGATATCTATTTTTCCTCCACACGTTGACCCTGCAATAGTTACGAC GTTCATGGGATTAACAATGTTTACAGCATACCTTCTTTGCATTATTTCAAAGACTTGTTACCTT TGAATTAAGATCTAAAATTGTTAAATAAGGTTATTGATTTTGCAGATAAAAAAAGATGGATTTT TCCCAGCAGATATTCTTTTCATGTCCAGTACTAATTCTGATGGTATCTGCTACGTTGAGGTGCT TCTTTTGACAGCCCCTTTAAAATTATATAGTACTGTCTTCTTGTCCAGGGCCAAAGCTGTTATC AGTAGCATTATCTTACCTAGTGTGTGTTCATATGATTATTCCTTGTGTGTGCAGACTGCAAACC TAGATGGAGAAACAAATTTGAAAATAAGAAAGGCACTTGAAAGGACATGGGATTACTTGGTACC AGAGAAAGCTTATGAGTTTAAAGGTTAGCCTACGGCTTTGATTGTGGTCATGCAAGAATTTTTT TGTAGTAGATGTGAACCTTTGCAGTGACATGTAGTACTTAATTCTCTATGAATTGCATTGCAAA TAAAGTTTATTGCTTCAGTTGGTTTGGCATATCTTGTCGAAAAATTAGAAATGAATCTAGCTGA AAAAGGTTCACCTGAGTCCGGTTACTATTTTAAGTTAACCTGCCAACTCGTTGCTTTTTCTTAT ATCACAATCTGATGAACGGACAAGCATCACCAGAAAATGGAAGAAGAGTCTTATATAGCAGTCG ATTCCATCATTTGTTTAGATGTTTGTCTGGCTCTTATGAAAAGAGAAGTTATTGTTAAATGCCT GGTAGAATTTTTCTATAATTGTTTATTCTGACAGTTCCTGTAGCTCATTTCTCTTACCGATGAT TATTTTCTTGTCTCTTATCCATTTTCTTCTGCGTAAGGACGCGATTTTTCCTTTTTTCTGATGG TTCTTCATTTTATTCAACTTTTTTTTTATTTCAGTATGATTGTGTGGTAACCGTTAAATACATT TCTTCACTTTCTCCAACATCTCTGTCTTTTACCATGCAGGTGAAATTCAGTGTGAGCAACCAAA CAATTCTCTGTACACTTTTACTGGGAACCTTGTAGTCCAAAAGCAGACGTTACCTCTCTCTCCG GACCAGCTTTTATTGCGTGTATGATTGACTATTTCTGCTGTTGGCTGTTTTTTCTTTTCTGTCT TGTGTTTTTTTGCAATTTCATGATTTTCTTTGTCTTAGATAATGGTGATCAGCTTATGAGATAT CTTGTATTTTTTGGCAACTTTTATATCCTCGGATTTTAACAGTATTTTGAGCAGATTTCCATGC ATGTTGTGCAGAGCCTTTTATATCCTTAGATTTAATAATATTCTGAGACGTTTGATATCTGTAT TATCAGGGATGCAGTCTTAGGAACACAGAATACATAGTTGGAGCTGTAGTTTTTACTGGTCATG AGACGAAGGTAAGCTGTCATGAAGCTTGTTTTATGGGAAACTAGCTTTGCAAACGTGCGTTTTT AGCTTTCAGGATTCATATATTTTAACCCTTCTATGCTTTCTACTTCGTTGTATAGTTACTATAC ACATAGGATCTTAAGCTATTCTATGGTTAATTCTACATATGTAGGTGATGATGAATGCCATGAA TGCTCCTTCCAAAAGAAGTACGCTGGAAAAGAAGCTTGACAAACTCATTATTACAATATTTTGT GTCCTTGTCACGATGTGTCTGATTGGAGCTATAGGCTGGTGTGATTTCTCGTCAATCTTGTGAA TTATTAACTCCTGCTTCGATTTGTTTATGCTCCAGTTCTCATGGCCTGTTGTGGTACTGTTATC TATATTTGTTATTTTTACAGTTCAATTGTGACGGATCGTGAGGACAAATACTTGGGTCTTCATA ACTCAGATTGGGAATACCGCAATGGACTCATGGTAAATAGTGTTGTATAGATGAAGTTGATTTC CTTCTACTTCTGGATTTGCTGTTTTTTACCAAATTGCTACCCTCTGCTGCTACAGATAGGATTT TTCACCTTTTTCACGCTAGTCACTCTGTTCTCATCAATTATACCAATCTCCCTTTATGTTTCTA TTGAGGTATGTCTCTCCTAGTATCATCCTCTTCTAACTATCTGCACTACAAGGACTAGCAATTT GAATGATCTCTATTTTGTTTCCTTACACCCAGATGATCAAGTTTATCCAGTCGACCCAGTTTAT CAACCGCGATCTTAATATGTATCATGCTGAAACAAATACCCCTGCCTCGGCCAGGACTTCTAAT TTGAACGAGGAGCTTGGA

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.118103622

Conservation Information
Conserved circRNAs	NA
PMCS	0.118103622

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of AT1G59820_circ_g.1

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