Detail information of BGIOSGA002654_circ_g.1


General Information
CircRNA Name BGIOSGA002654_circ_g.1
ID in PlantcircBase osi_circ_008941
Alias Chr01:993141_993959(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 1094900-1095718  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA002654
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   Yes-No
Splicing signals   TG-CA
Number of exons covered BGIOSGA002654-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTTTTACTTGAGAGAGCAATTTTGACAAATATATCTTGATATGTTAGTACATAGGCAAAATCT
TTTGAGTAGTTCTACTGAGATAAGAGCATTGACATAggtcctgctcttgttttagatttgtgtt
tgtagttgactattagatacttcctttgttctcaaatgcttaactcttttgaaaaaaaagtgtc
tatttagt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTCCTGCTCTTGTTTTAGATTTGTGTTTGTAGTTGACTATTAGATACTTCCTTTGTTCTCAAA
TGCTTAACTCTTTTGAAAAAAAAGTGTCTATTTAGTAAGTACTTGTCATTTTCTTCCCTTCTAC
TCCCAAAATAAGAAGAAAAGACTATCCCTATGGCCCTATTGACTCTGCTTATGGACCTGCTTTT
ACTACTTTATTTATGTTCTTCTAATAAATTAAATTGTACTTTGGTCACATTCTGTCTGAATTGA
TTTGCTTGGTTGTGAATACTGCCTAGCATTTGAGAATGGAGGGATTGCTAGATTTACAATCAGG
TTTGCACCTTGGTCAATGATGGACTTTTAAAACCCAGCTATTTTGTTCGTGAAAGTAAATAGGA
AGTTATTCATGTATGTGAACGAGTGTTTAAATAAGTGATCACTAACCAGACCAGGAATTTTACT
GCTTCAACACCAATTAATATGCTTATAAATGTAAAAAGGATCAGATATCAACTAGTCAGTGACA
TCTATCTTTTCATCGATGTGTCTATTGCCCCAGGGCTCAAATATCATCCTCGCATTGAATGGTA
TTTTTCCAATTAAAATCTCTTTGCAAACTGCAATCATACTGAGCTAATATTCTCATGTAAAGGG
CAACATCTTCTACTTAATATCCAAATTGAATGGCTGTTGAAGTTCTGTATGTTGGAAAGCCAAT
GTATCATATTATTATTTTTTTACTTGAGAGAGCAATTTTGACAAATATATCTTGATATGTTAGT
ACATAGGCAAAATCTTTTGAGTAGTTCTACTGAGATAAGAGCATTGACATA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021