Plant Circular RNA Database

Detail information of Os02g0106700_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os02g0106700_circ_g.1
					
						ID in PlantcircBase
						osa_circ_012669
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 392604-393634  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os02g0106700						
					
						Parent gene annotation
						
							Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 d
omain containing protein. (Os02t0106700-01)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os02g0106700_circ_g.2 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0106700-01:2

General Information
CircRNA Name	Os02g0106700_circ_g.1
ID in PlantcircBase	osa_circ_012669
Alias	NA
Organism	Oryza sativa
Position	chr2: 392604-393634 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os02g0106700
Parent gene annotation	Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 d omain containing protein. (Os02t0106700-01)
Parent gene strand	+
Alternative splicing	Os02g0106700_circ_g.2
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0106700-01:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							ACATCAAGGTCATTCCAGAACCATAGTTGGGATCCAAAAGCAAAATGGTCAACATGGGAATCAA
GATCGATTTACCCTTTTGATTTTGGACCCTGGCCATgacactcatcaagaatgtaacaatctgt
tcgctggtgatcctcatgctcaaggagcctcctcaagcatcgccggaagctcatcacttcaggg
aagtgttt

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							NA						
					
						Genomic sequence
						
							GACACTCATCAAGAATGTAACAATCTGTTCGCTGGTGATCCTCATGCTCAAGGAGCCTCCTCAA
GCATCGCCGGAAGCTCATCACTTCAGGGAAGTGTTTTGGATGAGCAAGTATCTTGCTTGCTCCA
AGCGCAACTCCGAAGCAATGTTCAGGAAATACAAGGAGGTGTTATGAACTTGTTGAGAGCCTGC
CTGGAATCAGAAGCTGGTTCATCGACAAGTATGATATCAGGACATGTTGATCACTATCAGAGTC
TTTCATCAGAAGATAAGGGGTGGGGATGTGGGTGGAGAAATATCCAGATGCTGAGCTCTCATTT
GCTGAAGCAAAGGCCGGAAGCAAGGGAGGCTTTATTTGGTGGTTCTGGATTTGTTCCTGACATC
CCTTCACTTCAGAGGTGGCTTGAGATTGCTTGGGATAAGAAATTTGATACCCTTGGCTCAAGCC
ATTTTCATAACAAAGTTTATGGCGCCAAGAAGTGGATAGGGACCACGGAATGTGCTGCCCTTCT
CCGCTCTTTTGGTTTGCGTGCAAGGGTTGTAGATTTTGATAGCACGGAATCATCAGGTCCTCAC
AGTAAGAACGGAAAACATGCACCAAAAAGAGTACAAGGGCCAATGGACAAGTTCTTGATAAAGA
ATGTTTCTCCAACATCTACATCTTCTGAACTTTGTCGAGAAGATGCTGAAAACATGAGAGGCCA
ACAGGTTCTTGTTGACTGGATCTGGAACTACTTTGCTAGCAGGCATTCTGATAACTCGGACAGT
TCAAGGCGTGTGCTTGTGAGTGATAAAACGTAAGGGATGTTCTCAGAAATGTTCAATCTCACCA
TCTGAAATGCTTGCAGCTTTCGTAAGTGCATGTTAACACTACGCTTAAGAATGTTGTACACTGA
CTAATGTGTGTTATTCGCAGCCCATTGTATTTCCAACATCAAGGTCATTCCAGAACCATAGTTG
GGATCCAAAAGCAAAATGGTCAACATGGGAATCAAGATCGATTTACCCTTTTGATTTTGGACCC
TGGCCAT

Sequences
Splice junction sequence	ACATCAAGGTCATTCCAGAACCATAGTTGGGATCCAAAAGCAAAATGGTCAACATGGGAATCAA GATCGATTTACCCTTTTGATTTTGGACCCTGGCCATgacactcatcaagaatgtaacaatctgt tcgctggtgatcctcatgctcaaggagcctcctcaagcatcgccggaagctcatcacttcaggg aagtgttt
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GACACTCATCAAGAATGTAACAATCTGTTCGCTGGTGATCCTCATGCTCAAGGAGCCTCCTCAA GCATCGCCGGAAGCTCATCACTTCAGGGAAGTGTTTTGGATGAGCAAGTATCTTGCTTGCTCCA AGCGCAACTCCGAAGCAATGTTCAGGAAATACAAGGAGGTGTTATGAACTTGTTGAGAGCCTGC CTGGAATCAGAAGCTGGTTCATCGACAAGTATGATATCAGGACATGTTGATCACTATCAGAGTC TTTCATCAGAAGATAAGGGGTGGGGATGTGGGTGGAGAAATATCCAGATGCTGAGCTCTCATTT GCTGAAGCAAAGGCCGGAAGCAAGGGAGGCTTTATTTGGTGGTTCTGGATTTGTTCCTGACATC CCTTCACTTCAGAGGTGGCTTGAGATTGCTTGGGATAAGAAATTTGATACCCTTGGCTCAAGCC ATTTTCATAACAAAGTTTATGGCGCCAAGAAGTGGATAGGGACCACGGAATGTGCTGCCCTTCT CCGCTCTTTTGGTTTGCGTGCAAGGGTTGTAGATTTTGATAGCACGGAATCATCAGGTCCTCAC AGTAAGAACGGAAAACATGCACCAAAAAGAGTACAAGGGCCAATGGACAAGTTCTTGATAAAGA ATGTTTCTCCAACATCTACATCTTCTGAACTTTGTCGAGAAGATGCTGAAAACATGAGAGGCCA ACAGGTTCTTGTTGACTGGATCTGGAACTACTTTGCTAGCAGGCATTCTGATAACTCGGACAGT TCAAGGCGTGTGCTTGTGAGTGATAAAACGTAAGGGATGTTCTCAGAAATGTTCAATCTCACCA TCTGAAATGCTTGCAGCTTTCGTAAGTGCATGTTAACACTACGCTTAAGAATGTTGTACACTGA CTAATGTGTGTTATTCGCAGCCCATTGTATTTCCAACATCAAGGTCATTCCAGAACCATAGTTG GGATCCAAAAGCAAAATGGTCAACATGGGAATCAAGATCGATTTACCCTTTTGATTTTGGACCC TGGCCAT

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_003581* 						
					
						PMCS
						0.225266715

Conservation Information
Conserved circRNAs	osi_circ_003581*
PMCS	0.225266715

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							392776-393631(+)
393634-392775(+)
392650-393374(-)
392687-393608(-)
						
					

						Potential amino acid sequence
						
							MNLLRACLESEAGSSTSMISGHVDHYQSLSSEDKGWGCGWRNIQMLSSHLLKQRPEAREALFGG
SGFVPDIPSLQRWLEIAWDKKFDTLGSSHFHNKVYGAKKWIGTTECAALLRSFGLRARVVDFDS
TESSGPHSKNGKHAPKRVQGPMDKFLIKNVSPTSTSSELCREDAENMRGQQVLVDWIWNYFASR
HSDNSDSSRRVLVSDKTPLYFQHQGHSRTIVGIQKQNGQHGNQDRFTLLILDPGHDTHQECNNL
FAGDPHAQGASSSIAGSSSLQGSVLDEQVSCLLQAQLRSNVQEIQGGVMNLLRACLESEAGSST
SMISGHVDHYQSLSSEDKGWGCGWRNIQMLSSHLLKQRPEAREALFGGSGFVPDIPSLQRWLEI
AWDKKFDTLGSSHFHNKVYGAKKWIGTTECAALLRSFGLRARVVDFDSTESSGPHSKNGKHAPK
RVQGPMDKFLIKNVSPTSTSSELCREDAENMRGQQVLVDWIWNYFASRHSDNSDSSRRVLVSDK
TPLYFQHQGHSRTIVGIQKQNGQHGNQDRFTLLILDPGHDTHQECNNLFAGDPHAQGASSSIAG
SSSLQGSVLDEQVSCLLQAQLRSNVQEIQGGVMNLLRACLESEAGSSTSMISGHVDHYQSLSSE
DKGWGCGWRNIQMLSSHLLKQRPEAREALFGGSGFVPDIPSLQRWLEIAWDKKFDTLGSSHFHN
KVYGAKKWIGTTECAALLRSFGLRARVVDFDSTESSGPHSKNGKHAPKRVQGPMDKFLIKNVSP
TSTSSELCREDAENMRGQQVLVDWIWNYFASRHSDNSDSSRRVLVSDKTPLYFQHQGHSRTIVG
IQKQNGQHGNQDRFTLLILDPGHDTHQECNNLFAGDPHAQGASSSIAGSSSLQGSVLDEQVSCL
LQAQLRSNVQEIQGGVMNLLRACLESEAGSSTSMISGHVDHYQSLSSEDKGWGCGWRNIQMLSS
HLLKQRPEAREALFGGSGFVPDIPSLQRWLEIAWDKKFDTLGSSHFHNKVYGAKKWIGTTECAA
LLRSFGLRARVVDFDSTESSGPHSKNGKHAPKRVQGPMDKFLIKNVSPTSTSSELCREDAENMR
GQQVLVDWIWNYFASRHSDNSDSSRRVLVSDKTPLYFQHQGHSRTIVGIQKQNGQHGNQDRFTL
LILDPGH(+)
MTLIKNVTICSLVILMLKEPPQASPEAHHFREVFWMSKYLACSKRNSEAMFRKYKEVL*(+)
MRITSEQIVTFLMSVMARVQNQKGKSILIPMLTILLLDPNYGSGMTLMLEIQWGFITHKHTP*(
-)
MSFRRCLRRLLEHEDHQRTDCYILDECHGQGPKSKG*(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	392776-393631(+) 393634-392775(+) 392650-393374(-) 392687-393608(-)
Potential amino acid sequence	MNLLRACLESEAGSSTSMISGHVDHYQSLSSEDKGWGCGWRNIQMLSSHLLKQRPEAREALFGG SGFVPDIPSLQRWLEIAWDKKFDTLGSSHFHNKVYGAKKWIGTTECAALLRSFGLRARVVDFDS TESSGPHSKNGKHAPKRVQGPMDKFLIKNVSPTSTSSELCREDAENMRGQQVLVDWIWNYFASR HSDNSDSSRRVLVSDKTPLYFQHQGHSRTIVGIQKQNGQHGNQDRFTLLILDPGHDTHQECNNL FAGDPHAQGASSSIAGSSSLQGSVLDEQVSCLLQAQLRSNVQEIQGGVMNLLRACLESEAGSST SMISGHVDHYQSLSSEDKGWGCGWRNIQMLSSHLLKQRPEAREALFGGSGFVPDIPSLQRWLEI AWDKKFDTLGSSHFHNKVYGAKKWIGTTECAALLRSFGLRARVVDFDSTESSGPHSKNGKHAPK RVQGPMDKFLIKNVSPTSTSSELCREDAENMRGQQVLVDWIWNYFASRHSDNSDSSRRVLVSDK TPLYFQHQGHSRTIVGIQKQNGQHGNQDRFTLLILDPGHDTHQECNNLFAGDPHAQGASSSIAG SSSLQGSVLDEQVSCLLQAQLRSNVQEIQGGVMNLLRACLESEAGSSTSMISGHVDHYQSLSSE DKGWGCGWRNIQMLSSHLLKQRPEAREALFGGSGFVPDIPSLQRWLEIAWDKKFDTLGSSHFHN KVYGAKKWIGTTECAALLRSFGLRARVVDFDSTESSGPHSKNGKHAPKRVQGPMDKFLIKNVSP TSTSSELCREDAENMRGQQVLVDWIWNYFASRHSDNSDSSRRVLVSDKTPLYFQHQGHSRTIVG IQKQNGQHGNQDRFTLLILDPGHDTHQECNNLFAGDPHAQGASSSIAGSSSLQGSVLDEQVSCL LQAQLRSNVQEIQGGVMNLLRACLESEAGSSTSMISGHVDHYQSLSSEDKGWGCGWRNIQMLSS HLLKQRPEAREALFGGSGFVPDIPSLQRWLEIAWDKKFDTLGSSHFHNKVYGAKKWIGTTECAA LLRSFGLRARVVDFDSTESSGPHSKNGKHAPKRVQGPMDKFLIKNVSPTSTSSELCREDAENMR GQQVLVDWIWNYFASRHSDNSDSSRRVLVSDKTPLYFQHQGHSRTIVGIQKQNGQHGNQDRFTL LILDPGH(+) MTLIKNVTICSLVILMLKEPPQASPEAHHFREVFWMSKYLACSKRNSEAMFRKYKEVL(+) MRITSEQIVTFLMSVMARVQNQKGKSILIPMLTILLLDPNYGSGMTLMLEIQWGFITHKHTP( -) MSFRRCLRRLLEHEDHQRTDCYILDECHGQGPKSKG*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os02g0106700_circ_g.1

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