Detail information of AT3G62360_circ_g.15


General Information
CircRNA Name AT3G62360_circ_g.15
ID in PlantcircBase ath_circ_028796
Alias NA
Organism Arabidpsis thaliana
Position chr3: 23077288-23080116  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT3G62360
Parent gene annotation Carbohydrate-binding-like fold
Parent gene strand -
Alternative splicing AT3G62360_circ_g.4 AT3G62360_circ_g.5 AT3G62360_circ_g.6 AT3G62360_circ_g.7 AT3G62360_circ_g.8 AT3G62360_circ_g.9 AT3G62360_circ_g.10 AT3G62360_circ_g.11 AT3G62360_circ_g.12 AT3G62360_circ_g.13 AT3G62360_circ_g.14 AT3G62360_circ_g.16 AT3G62360_circ_g.17 AT3G62360_circ_g.18 AT3G62360_circ_g.19 AT3G62360_circ_g.20 AT3G62360_circ_g.21 AT3G62360_circ_g.22 AT3G62360_circ_g.23 AT3G62360_circ_g.24 AT3G62360_circ_g.25 AT3G62360_circ_g.26 AT3G62360_circ_g.27
Support reads 1
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT3G62360.1:13
AT3G62360.2:12
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAAAAAAAAACAGTCAACTAATTGAATTCTTACTGTGATATGAGAAAAATCCAGTTTCCCATC
GGATCCTTTCCGAGACCTGACCAAAGACGAACTCGCctttgctttgtgacgagaaccaaacatt
cgcaccacaccacagatatcataggatacagcattgatgtctggaagtgaagccatatttggta
aaacctaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTGCTTTGTGACGAGAACCAAACATTCGCACCACACCACAGATATCATAGGATACAGCATTG
ATGTCTGGAAGTGAAGCCATATTTGGTAAAACCTAAGCAAAGAAGTTTAAGTGATTACTTTAGT
TTGCTGAACTTCAGTGAGGTGAAGCCATATCTGGAACAATTAATTTAGCACGCAAGAAAAAAAA
TAAGTGAGACCGATACCATGAACTTCTTCAGTTTGTCGAACTTGTAATGCTCCTTGACTGCATC
AATTGTATACTGGTTTGAGGTAACCTACGGAATTAAACCAATATTACGTTACATCCCCTGCTGT
AAAAACTATTGATCACAACATGAAGCTATAAGATTGAAGGGTGGTGAAATAAAACCAGATGGCA
CAAAATTTATATATATAATAATACATATGCTTTGCTTAGTACATAACCTTCAGAAATCTAGCCA
TATTCTTTACTCTAGACTCTAGAAGCCTCAAAAAATTCACTAGGAGAGGTTGAGTAACAACCAA
TTTAGCAGGCTTACAACTGGAACAAGGTATATGGTATAAATTTAAATTGAAGATAGCATTTACG
TATACCTGGTCAAGCTTGTAATAGCCTTCCTTGTCTGTGACAGATCTTAGACTACCATCTACTA
AGATTTTAACGCCCTCAACTCCCACTGAATTACCGTCAACTACGCGACCCCCAATGGAGAATCC
TGTTACCTAAAGGAGCATTCAGTTCAATATTTAGTGGACAGAACATGTAAGCAGAGTCCGATTA
TAGAAACACAGAGTGGTATAAGAGTTTGCAGTTATTCTTGACCTGAAATTTTTGGGGAACAGTG
ACATGTTGATGCTCTACAGATACAGGCATAACAGGAGGTGAAACATCAAAGACCGTATTCTCAC
CCTTATAATGCGGCACCAATTCGTATTTTCCTGAGTAAATCAAAGTGACCAAAAAACAGGTCAA
TAGAAATATAGAGCTGGACCATGCAACCAGAATTCCAAGCGTCCTTCTTGAACTTCAACATGCT
TAATAGTCATTTAACTTATGTTGTACAATACATAATTCATCAGGCTAAAGCTTAAGGTAAAATG
AATGCTCAATGAATTGGTTATGGATAAGTAATGATTTACCACAAGGGATGGACTTGAAACTGAA
AATTCCTTCTGCATCGGATACAGCATGGCAAAGAGATTTCCTTTCTCCAGCAGCGTCACCAGAT
CCTTGGGGACAATCTACCATGGAAACATCATCTGAATGCAAATATATATGGACACCCAGGATTG
GATTCCCCTACAAAAGGAAACAAAATAATTTCTATAAAAAAATTAAAATTAAGAATAGAGACAG
ACAAGTGCATGATGGATAGGAACCCAATCAAACCAATGATATTCAGATTCTACTCATGAAAGCA
GAGGAATGTAGTTGGATTTGAACATCGGAAGAAAAAAGAAACAGAGCAATAGAGGGATTACCTG
AGCAACAACCGACCCCTTAAGATCATAACCAAGGACGAAGAATATGTCATCAACCATGCCATTT
GCAAATCCAAGTTCCACCTACAGGTAAACAGAGAACTTGAACTATTAGCATGCATAATTAACAA
AGTTCAAGCCAAATATATAGAAACGGATACAATAGTAAAGAACCGAGTAGGGAAAGACATGTGA
ACTTAAAATGGAAAAGGTTGGTCTGGAGAATTTTATACAAAAAAAGTAAAATAAAAATTAAATG
CAAAATCAAAAAGATCTGAGACCTCTGTTGAACCGCGAACTTCAACTTGCAGCTCTGGATGGGA
TGCACGGATATTGTATGTTCCTGCAACCAATCAGACAGGCTCGTCATTTGATTATAACAAGATA
CCTGGAAACTAGGCACTTGACATTTGATATTACTCTATGGGAAAACTTCCAACTACATACATGC
AAGGCAAGAATAACAAAGTGATAGAAAAATAGAAAAAGAGACACTGATGATGAAAGCTTACTCC
TTACCTGGAATAATATTCTTGAATAAGTAGCTCCCATCTGACGATGTGAGAACAGAAGCGACAG
GATCTTCTGATCCATCAGAAGACAACAATTCAACATTGACATCTGCTGGGCCTCCATTCTTAAT
CAGACAACTCTCCCCACCAACAGCTCCCAAGACTTTACCGGATAATGTAAAACTGCAATATACA
AAAGAGTAAAGCATGAAAATTTTAAACGAAGAAAGATGACCAAACCACCAATTACAAAGTTGAA
AAAAGAAAAAAGAGGCAAACGCATAGACTAAAACGAACCCCGTGAAGTGGAAGTTAATATCATC
ATTGTTGTTGCAACTAGAGTCGTCAACAACAACAGTTACCTGCAACACCAAATTTAATGTCATA
ACTAGCTACAAGCCGGATGTTTTTTTATCAAGAAAGATTCTTGATGCATAATCCTCAGAGAAAA
AATGGCAAACAGATTAACCTTATCTGGATTCCATGACCATCCGTCAGGTCCATTTATCTTGAGA
ATGAATGAGCCCTACGAGAAGAAAGCATAGAAATCACTTGCAGAATAAATGCAACACCGATTAA
CCCCGAAAAGGGTATGATGAATACCTTGTCATATACTGGGATGAAATAGTAACCATTTGGGGCA
CACTGTGTACTGTCTTTTACCAATCCATCTACTGTTTGAAGCTCAACCTTGTAATTTGAAGGGG
AACAAACAAACAAATCAATGAAACCTCACTCAGAAAAAGATAGAAAAAAAAACAGTCAACTAAT
TGAATTCTTACTGTGATATGAGAAAAATCCAGTTTCCCATCGGATCCTTTCCGAGACCTGACCA
AAGACGAACTCGC
Conservation Information
Conserved circRNAs NA
PMCS 0.105563061
Functional Information
Coding potential Y
Potential coding position 23078817-23077290(-)
Potential amino acid sequence MVDDIFFVLGYDLKGSVVAQGNPILGVHIYLHSDDVSMVDCPQGSGDAAGERKSLCHAVSDAEG
IFSFKSIPCGKYELVPHYKGENTVFDVSPPVMPVSVEHQHVTVPQKFQVTGFSIGGRVVDGNSV
GVEGVKILVDGSLRSVTDKEGYYKLDQVTSNQYTIDAVKEHYKFDKLKKFMVLPNMASLPDINA
VSYDICGVVRMFGSRHKAKASSSLVRSRKGSDGKLDFSHITVELQTVDGLVKDSTQCAPNGYYF
IPVYDKGSFILKINGPDGWSWNPDKVTVVVDDSSCNNNDDINFHFTGFTLSGKVLGAVGGESCL
IKNGGPADVNVELLSSDGSEDPVASVLTSSDGSYLFKNIIPGTYNIRASHPELQVEVRGSTEVE
LGFANGMVDDIFFVLGYDLKGSVVAQGNPILGVHIYLHSDDVSMVDCPQGSGDAAGERKSLCHA
VSDAEGIFSFKSIPCGKYELVPHYKGENTVFDVSPPVMPVSVEHQHVTVPQKFQVTGFSIGGRV
VDGNSVGVEGVKILVDGSLRSVTDKEGYYKLDQVTSNQYTIDAVKEHYKFDKLKKFMVLPNMAS
LPDINAVSYDICGVVRMFGSRHKAKASSSLVRSRKGSDGKLDFSHITVELQTVDGLVKDSTQCA
PNGYYFIPVYDKGSFILKINGPDGWSWNPDKVTVVVDDSSCNNNDDINFHFTGFTLSGKVLGAV
GGESCLIKNGGPADVNVELLSSDGSEDPVASVLTSSDGSYLFKNIIPGTYNIRASHPELQVEVR
GSTEVELGFANGMVDDIFFVLGYDLKGSVVAQGNPILGVHIYLHSDDVSMVDCPQGSGDAAGER
KSLCHAVSDAEGIFSFKSIPCGKYELVPHYKGENTVFDVSPPVMPVSVEHQHVTVPQKFQVTGF
SIGGRVVDGNSVGVEGVKILVDGSLRSVTDKEGYYKLDQVTSNQYTIDAVKEHYKFDKLKKFMV
LPNMASLPDINAVSYDICGVVRMFGSRHKAKASSSLVRSRKGSDGKLDFSHITVELQTVDGLVK
DSTQCAPNGYYFIPVYDKGSFILKINGPDGWSWNPDKVTVVVDDSSCNNNDDINFHFTGFTLSG
KVLGAVGGESCLIKNGGPADVNVELLSSDGSEDPVASVLTSSDGSYLFKNIIPGTYNIRASHPE
LQVEVRGSTEVELGFANGMVDDIFFVLGYDLKGSVVAQGNPILGVHIYLHSDDVSMVDCPQGSG
DAAGERKSLCHAVSDAEGIFSFKSIPCGKYELVPHYKGENTVFDVSPPVMPVSVEHQHVTVPQK
FQVTGFSIGGRVVDGNSVGVEGVKILVDGSLRSVTDKEGYYKLDQVTSNQYTIDAVKEHYKFDK
LKKFMVLPNMASLPDINAVSYDICGVVRMFGSRHKAK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017