Detail information of Zm00001d047204_circ_g.1


General Information
CircRNA Name Zm00001d047204_circ_g.1
ID in PlantcircBase zma_circ_003001
Alias circ1890
Organism Zea mays
Position chr9: 121908754-121909779  JBrowse»
Reference genome AGPv4.38
Type   ui-circRNA
Identification method CIRCexplor2
Parent gene Zm00001d047204
Parent gene annotation Protein LNK1
Parent gene strand +
Alternative splicing NA
Support reads 2
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered Zm00001d047204_T008:2
Zm00001d047204_T002:3
Zm00001d047204_T005:3
Zm00001d047204_T003:3
Zm00001d047204_T001:2
Zm00001d047204_T006:3
Zm00001d047204_T007:3
Zm00001d047204_T004:3
Zm00001d047204_T009:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CACGAAGTGCGCAACATAGACAAGTTTTTCCAAATACGATGAACAGCAATGGTGGTAGCGAGGA
CGGAAAGGAACTGGAGAACGCAGAAACTTCGTGCAAgttgcaggttggaaaccagtatccatct
gaaaatgcaattcaaggtaccgaagataagaaattctctatagcgtcaacttcccagctgagtt
ctcagaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTGCAGGTTGGAAACCAGTATCCATCTGAAAATGCAATTCAAGGTACCGAAGATAAGAAATTC
TCTATAGCGTCAACTTCCCAGCTGAGTTCTCAGAATTTACTGAATCAAAGACACCACTTAGATT
CCAGTTCACCAAGCAATATTACTTCGGAGTCCTATCCAGGAAAGTTCGGTCCATCTAGCTGTTC
TTCTGCACAAAGAAACTCAAAAGGTAATGTTACAAGCGAAACGTCAGATGGGGTTTTTATTTTT
TTAGTTGTTCTGAACATGTTTGTTTATCTTGTACTCTTCTGGTGTGATTAGCTGGTGTGACACT
TAAGTGCGCAAATGCAGTGCAGAAGAAAACTGTCAACATACAACCAAGACAGCCAGCAAATGAT
AATGTTATGAACACAAGCAGAGCTTCTTACCCTTGTGAGAACTATGAAACTGAAAGAAGAGGAT
TAGGGAAAAGAACTCTGGGGGATCCTCAAGTTACAATGGGTAGTTCAATGGTAGTGGATGGCTC
ATTTGTATCATCTATGTCCTCTGATAACTCAGTCGAAGAAAGCAGCTTTCAACAACTGCAGGAT
GCTGTTAGTCAGGTATCATGGGTTACTAGTTTTCTTTTTGATTTCTTTTAATTTCCCATATAGC
ATAAACTCTAGCCTACAGCAGTACAGCCCCTTCATTTTGTTATTGCAAATCCATGCTGTGTTTG
TAGTTTCTTTTTTTTTCCTTTGTGGTTTTTTGATCTCTCTAAATGACCATAAAATTGATCGAAG
GAAGGGAGCCTAGTTTGGTTGAACCAAAATTCAGTTTTTCATCCTTGTCTTAGATGATCAAATA
AACTACGTACCGCAGTATTAAAGTTGCTTTGCATGTCTACTTCAGCTGGATGTGCAAACCAAAT
TGTGCATCAGGGATGGTTTATACCGATTGGCACGAAGTGCGCAACATAGACAAGTTTTTCCAAA
TACGATGAACAGCAATGGTGGTAGCGAGGACGGAAAGGAACTGGAGAACGCAGAAACTTCGTGC
AA
Conservation Information
Conserved circRNAs NA
PMCS 0.011939571
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b