Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d047204_circ_g.1 |
ID in PlantcircBase | zma_circ_003001 |
Alias | circ1890 |
Organism | Zea mays |
Position | chr9: 121908754-121909779 JBrowse» |
Reference genome | AGPv4.38 |
Type | ui-circRNA |
Identification method | CIRCexplor2 |
Parent gene | Zm00001d047204 |
Parent gene annotation |
Protein LNK1 |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | 2 |
Tissues | seedling leaves |
Exon boundary | No-Yes |
Splicing signals | GT-TA |
Number of exons covered | Zm00001d047204_T008:2 Zm00001d047204_T002:3 Zm00001d047204_T005:3 Zm00001d047204_T003:3 Zm00001d047204_T001:2 Zm00001d047204_T006:3 Zm00001d047204_T007:3 Zm00001d047204_T004:3 Zm00001d047204_T009:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.011939571 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chen et al., 2017b |