Detail information of Os06g0193400_circ_g.1


General Information
CircRNA Name Os06g0193400_circ_g.1
ID in PlantcircBase osa_circ_030019
Alias NA
Organism Oryza sativa
Position chr6: 4711081-4713602  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os06g0193400
Parent gene annotation Similar to Helix-loop-helix protein homolog. (Os06t0193400-01);S
imilar to BHLH transcription factor. (Os06t0193400-02)
Parent gene strand -
Alternative splicing Os06g0193400_circ_g.2 Os06g0193400_circ_g.3
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os06t0193400-01:7
Os06t0193400-02:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTCTAGAAACAGAAAGTGTTCACAGCTGATAATCCTGTACCAACAGCAGTTCCTTTTTGTACG
AAATACCCTCTGACGCTGAAAGTAACTTTGTTAACCctcggtttgagattccctaagaagggga
agaactgctccaggagctcctagcctgctcatgctcaatacctacagaattcaagaagactgtc
agccatca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1343
Transcript exons: 4711081-4711149,4711242-4711307,4711997-4712062,4712184-
4712345,4712438-4712530,4712632-4712724,4712809-4713602
CTCGGTTTGAGATTCCCTAAGAAGGGGAAGAACTGCTCCAGGAGCTCCTAGCCTGCTCATGCTC
AATACCTTGACCTGAAGCTGAAGAAATTTCACATAATCAATTATTTCATCAAGCATTGATGCCT
TATCTGCCTTATTGGAGTTTGGGACAAGGACTTGGAGATTTTTCATCCTTTCTGAAATTTTCTC
TCGGCGAAGCCGTTCAGCAATACTGTGAGGATCAGTTGCCTGTCCACGGCGAGCCCTTGTACGT
GGCTTCGCATTGGCACTATTTCCAGGAGCTGAATTTGCTTGGGGTTCCACATCAGAAGAATGGT
TAATAGGGTACTCACTATTATGGTCATGGATCAATGGTGGTATCTTTGAAGGAAGTGGTGGCCC
TTGTGCATCAGTAACTGCCAAATGACTACCAGATGTGAATGTAGGGAGAGGTATATTCCGGATA
TTTTGCTCCTGTTGAGCAGCCTTCAAACCACCCGCTCCTAGTGCCTGCAGGACAGTACCAAACG
AAGGGATGGAACCACCATTGAGAAACTCTTTGCTATCATGTAGTGATGCTATGGCAGCATTATC
AAACAGCGAGGGATTCCCATTTGGAAGACTTGTTTTGTTCAACATAGCAACATTTTGTGCCCCT
TGGAAACCGAAAGCATCTAGATTTACTGGTTCCATGAAGGAGGAAACGTTTTGGAATGCTGAAC
ACAACGTCGGGGCTGAAGAAACGGCATGCACATCAGCAAGAAAAGCAGAAATGTCACTACCATT
GCTATCAATTGAACTGGACAAAGCATGAGGCAGTTCTGCAAGACCAGGTGTATCCAATTTCGCA
TCAAATGTTCCAGATGTTGAATTGCACTGAAGAACCCCTGGGGGAATTGAATTGCTTCGCAGAT
TGCTGCTGTTCTGTAGCTGTTGAAGATCCAGAAGATTGTTAGGGAGCTCACCCTTAGGTAGAAT
CTGGCCAGATAATGGATGAGCCTGGGTGTTGTATGGCAAGCATCCATTTGCAAGCATAGTGGGG
TTCCTTTCATTCTCCGTGATCTTTAAACTGCGATCTGATCCAGCTCCCATGAAATAGCCTGAAG
GTGGTAGGCTTCCTTCTTCTGCATATGATTCCGACGAACCGTCAACAAAATTATAGTTCTCAGA
ACCTGAATTGCCAGGCCACATGTAGGAACCAGCAGAGTAGTCCATGATAGCACGCTACAAAATT
GATGCTCCAAAGTGTTACAGAGAATGGCCTCTAGAAACAGAAAGTGTTCACAGCTGATAATCCT
GTACCAACAGCAGTTCCTTTTTGTACGAAATACCCTCTGACGCTGAAAGTAACTTTGTTAACC

Genomic sequence CTCGGTTTGAGATTCCCTAAGAAGGGGAAGAACTGCTCCAGGAGCTCCTAGCCTGCTCATGCTC
AATACCTACAGAATTCAAGAAGACTGTCAGCCATCAGAAAAGGAGCTAACGCCCCCACCTCATC
CCACACACCAAATAAACCTGACTGCAGATGTACCTTGACCTGAAGCTGAAGAAATTTCACATAA
TCAATTATTTCATCAAGCATTGATGCCTTATCTGCCTGCTCATACAAAGAAGGGTTAATTGTCA
GGAGTTCTAAACCAAAATTTGTATACATTTTATTCTATACTAGCTAAATACACTTGCTTTGCTA
CGGATTAAAATAAATTATACATGTGCTAATATTGCTTGGAAAAATTATTGTGATGTTTTTGGGA
CAATTTATTCCCTGTAGATGTCTTTGCATAATAAATTTGTATTTTAGAGATGAAATAAAATAGA
ATCATATGTAGAAAACTATTTTGTAAAACACATGAAGGGGTATTTAGTAAAAGCATAAACAATA
CTCTATATAATAGAGGTGGGGTGGCAGATTCACTGCCACCACCATTGTTTTCTTTGAAAAGGAG
TATAGATAGATGCCAATAAAAAAATAATTGCATTGAAGGCAGAATATATGTATCAGCAACATTA
TAAATCCCATCCACCTGAAACAAAGACAACGGTACATCTAACGCCCATGTGTTGGCTGCACCAA
AAGATCAATACTTGGATCTGATCTATTTGATAATCCAAAAAAATGCTTGCTTCTGTTTGTCCCA
TTTGGTCAATTTCCCAACATACTTAAGTATGTATCCTCCCCTAGTATACTCTTAGTTGTTATCA
ATCAACAGTTATGAATATGACAGCAATAACAACAGGGGGAGAAGCGGATTGCATTTTTGTGGTG
ACTCAGAACAAAAAAAGCACCTTATTGGAGTTTGGGACAAGGACTTGGAGATTTTTCATCCTTT
CTGAAATTTTCTCTCGGCGAAGCTGCAGCACAATGAGAAATTATATTTAAGACCATGGGTGCAC
ACAAATTAAAAAAAATAATCGATTATTATGCAACAGTTTGATTTGTTTCAAAGTGAACTGATCT
TATAAAAGAACTCACCCGTTCAGCAATACTGTGAGGATCAGTTGCCTGTCCACGGCGAGCCCTT
GTACGTGGCTTCGCATTGGCACTATTTCCAGGAGCTGAATTTGCTTGGGGTTCCACATCAGAAG
AATGGTTAATAGGGTACTCACTATTATGGTCATGGATCAATGGTGGTATCTGAACATTTTCATA
CACAAAATTCAACTGTTGAGGTATAAAATTGAAGAGAAAGAAAGTGAAACACTGTCAATGAGAA
ATGCAAATAGAACCTTTGAAGGAAGTGGTGGCCCTTGTGCATCAGTAACTGCCAAATGACTACC
AGATGTGAATGTAGGGAGAGGTATATTCCGGATATTTTGCTCCTGCAATATGAAAATTGATTCA
TCAGTACAGTTAGAATTGAGTGGATAGTGAGCTGCGGATGTGGGAATTGCTGTTTAGTGGTAAA
GCTTGAAATTGAAACCTGTTGAGCAGCCTTCAAACCACCCGCTCCTAGTGCCTGCAGGACAGTA
CCAAACGAAGGGATGGAACCACCATTGAGAAACTCTTTGCTATCCTGGATTGCCAAAAGAGCAA
AAAATAATTCAATGAAGCAGATAATATGGCAATTATGTATATGTGGTGAATTGGTGATCATTAC
ATGTAGTGATGCTATGGCAGCATTATCAAACAGCGAGGGATTCCCATTTGGAAGACTTGTTTTG
TTCAACATAGCAACATTTTGTGCCCCTTGGAAACCGAAAGCATCTAGATTTACTGGTTCCATGA
AGGAGGAAACGTTTTGGAATGCTGAACACAACGTCGGGGCTGAAGAAACGGCATGCACATCAGC
AAGAAAAGCAGAAATGTCACTACCATTGCTATCAATTGAACTGGACAAAGCATGAGGCAGTTCT
GCAAGACCAGGTGTATCCAATTTCGCATCAAATGTTCCAGATGTTGAATTGCACTGAAGAACCC
CTGGGGGAATTGAATTGCTTCGCAGATTGCTGCTGTTCTGTAGCTGTTGAAGATCCAGAAGATT
GTTAGGGAGCTCACCCTTAGGTAGAATCTGGCCAGATAATGGATGAGCCTGGGTGTTGTATGGC
AAGCATCCATTTGCAAGCATAGTGGGGTTCCTTTCATTCTCCGTGATCTTTAAACTGCGATCTG
ATCCAGCTCCCATGAAATAGCCTGAAGGTGGTAGGCTTCCTTCTTCTGCATATGATTCCGACGA
ACCGTCAACAAAATTATAGTTCTCAGAACCTGAATTGCCAGGCCACATGTAGGAACCAGCAGAG
TAGTCCATGATAGCACGCTACAAAATTGATGCTCCAAAGTGTTACAGAGAATGGCCTCTAGAAA
CAGAAAGTGTTCACAGCTGATAATCCTGTACCAACAGCAGTTCCTTTTTGTACGAAATACCCTC
TGACGCTGAAAGTAACTTTGTTAACC
Conservation Information
Conserved circRNAs NA
PMCS 0.226651652
Functional Information
Coding potential Y
Potential coding position 4713458-4713599(-)
Potential amino acid sequence MDYSAGSYMWPGNSGSENYNFVDGSSESYAEEGSLPPSGYFMGAGSDRSLKITENERNPTMLAN
GCLPYNTQAHPLSGQILPKGELPNNLLDLQQLQNSSNLRSNSIPPGVLQCNSTSGTFDAKLDTP
GLAELPHALSSSIDSNGSDISAFLADVHAVSSAPTLCSAFQNVSSFMEPVNLDAFGFQGAQNVA
MLNKTSLPNGNPSLFDNAAIASLHDSKEFLNGGSIPSFGTVLQALGAGGLKAAQQEQNIRNIPL
PTFTSGSHLAVTDAQGPPLPSKIPPLIHDHNSEYPINHSSDVEPQANSAPGNSANAKPRTRARR
GQATDPHSIAERLRREKISERMKNLQVLVPNSNKADKASMLDEIIDYVKFLQLQVKVLSMSRLG
APGAVLPLLRESQTEG*(-)
Sponge-miRNAs osa-miR393b-3p
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017