Plant Circular RNA Database

Detail information of Zm00001d035346_circ_g.1

			
				
						 General Information
					

				
						CircRNA Name
						Zm00001d035346_circ_g.1
					

						ID in PlantcircBase
						zma_circ_008895
					

						Alias
						Zm06circ00010
					

						Organism
						
							Zea mays						
					

						Position
						
							chr6: 22723206-22726707  JBrowse»						
					

						Reference genome
						
							AGPv4.38						
					

						Type  
						
							u-circRNA							
									
								

					

						Identification method
						CIRI2
					

						Parent gene
						
							Zm00001d035346						
					

						Parent gene annotation
						
							Probable sucrose-phosphatase 2
							
					

						Parent gene strand
						-
					

						Alternative splicing
						
							NA						
					

						Support reads
						NA
					

						Tissues
						leaf, endosperm
					

						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

					

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

					

						Number of exons covered
						Zm00001d035346_T176:7
Zm00001d035346_T028:7
Zm00001d035346_T183:9
Zm00001d035346_T027:4
Zm00001d035346_T020:9
Zm00001d035346_T062:4
Zm00001d035346_T045:7
Zm00001d035346_T011:7
Zm00001d035346_T135:7
Zm00001d035346_T091:7
Zm00001d035346_T208:9
Zm00001d035346_T085:7
Zm00001d035346_T019:9
Zm00001d035346_T196:4
Zm00001d035346_T014:8
Zm00001d035346_T031:7
Zm00001d035346_T127:7
Zm00001d035346_T036:5
Zm00001d035346_T119:8
Zm00001d035346_T179:9
Zm00001d035346_T157:7
Zm00001d035346_T156:8
Zm00001d035346_T144:7
Zm00001d035346_T154:8
Zm00001d035346_T071:7
Zm00001d035346_T109:7
Zm00001d035346_T012:7
Zm00001d035346_T163:7
Zm00001d035346_T090:7
Zm00001d035346_T161:7
Zm00001d035346_T147:7
Zm00001d035346_T067:6
Zm00001d035346_T115:7
Zm00001d035346_T081:7
Zm00001d035346_T050:7
Zm00001d035346_T053:7
Zm00001d035346_T139:7
Zm00001d035346_T049:7
Zm00001d035346_T016:5
Zm00001d035346_T129:7
Zm00001d035346_T032:7
Zm00001d035346_T043:7
Zm00001d035346_T084:7
Zm00001d035346_T078:7
Zm00001d035346_T111:7
Zm00001d035346_T116:7
Zm00001d035346_T099:4
Zm00001d035346_T046:7
Zm00001d035346_T155:3
Zm00001d035346_T148:7
Zm00001d035346_T122:7
Zm00001d035346_T169:7
Zm00001d035346_T082:7
Zm00001d035346_T017:3
Zm00001d035346_T005:7
Zm00001d035346_T024:7
Zm00001d035346_T133:7
Zm00001d035346_T068:5
Zm00001d035346_T211:7
Zm00001d035346_T015:8
Zm00001d035346_T008:7
Zm00001d035346_T200:7
Zm00001d035346_T175:8
Zm00001d035346_T104:7
Zm00001d035346_T018:7
Zm00001d035346_T143:7
Zm00001d035346_T042:7
Zm00001d035346_T079:7
Zm00001d035346_T153:7
Zm00001d035346_T013:8
Zm00001d035346_T125:5
Zm00001d035346_T126:9
Zm00001d035346_T023:7
Zm00001d035346_T033:7
Zm00001d035346_T075:7
Zm00001d035346_T107:7
Zm00001d035346_T106:7
Zm00001d035346_T152:7
Zm00001d035346_T039:7
Zm00001d035346_T138:7
Zm00001d035346_T131:7
Zm00001d035346_T030:7
Zm00001d035346_T159:7
Zm00001d035346_T186:9
Zm00001d035346_T083:7
Zm00001d035346_T168:3
Zm00001d035346_T178:9
Zm00001d035346_T167:7
Zm00001d035346_T034:4
Zm00001d035346_T166:7
Zm00001d035346_T069:9
Zm00001d035346_T120:7
Zm00001d035346_T132:9
Zm00001d035346_T103:7
Zm00001d035346_T080:7
Zm00001d035346_T128:7
Zm00001d035346_T146:7
Zm00001d035346_T108:7
Zm00001d035346_T002:7
Zm00001d035346_T096:6
Zm00001d035346_T181:9
Zm00001d035346_T149:7
Zm00001d035346_T022:7
Zm00001d035346_T021:7
Zm00001d035346_T029:7
Zm00001d035346_T184:9
Zm00001d035346_T113:7
Zm00001d035346_T073:7
Zm00001d035346_T037:7
Zm00001d035346_T100:7
Zm00001d035346_T105:7
Zm00001d035346_T087:7
Zm00001d035346_T170:7
Zm00001d035346_T065:5
Zm00001d035346_T076:8
Zm00001d035346_T059:7
Zm00001d035346_T077:7
Zm00001d035346_T177:9
Zm00001d035346_T003:7
Zm00001d035346_T094:8
Zm00001d035346_T010:8
Zm00001d035346_T130:9
Zm00001d035346_T047:9
Zm00001d035346_T121:7
Zm00001d035346_T123:5
Zm00001d035346_T124:5
Zm00001d035346_T164:7
Zm00001d035346_T137:7
Zm00001d035346_T051:7
Zm00001d035346_T185:9
Zm00001d035346_T072:8
Zm00001d035346_T092:7
Zm00001d035346_T089:7
Zm00001d035346_T165:8
Zm00001d035346_T101:7
Zm00001d035346_T044:8
Zm00001d035346_T150:7
Zm00001d035346_T007:9
Zm00001d035346_T063:5
Zm00001d035346_T064:5
Zm00001d035346_T088:7
Zm00001d035346_T052:7
Zm00001d035346_T136:8
Zm00001d035346_T141:7
Zm00001d035346_T180:9
Zm00001d035346_T066:6
Zm00001d035346_T151:7
Zm00001d035346_T114:7
Zm00001d035346_T098:5
Zm00001d035346_T070:7
Zm00001d035346_T056:7
Zm00001d035346_T086:7
Zm00001d035346_T040:7
Zm00001d035346_T173:9
Zm00001d035346_T112:7
Zm00001d035346_T009:8
Zm00001d035346_T061:7
Zm00001d035346_T058:7
Zm00001d035346_T038:7
Zm00001d035346_T142:5
Zm00001d035346_T193:1
Zm00001d035346_T004:7
Zm00001d035346_T140:7
Zm00001d035346_T182:9
Zm00001d035346_T006:9
Zm00001d035346_T095:7
Zm00001d035346_T145:7
Zm00001d035346_T110:7
Zm00001d035346_T035:7
Zm00001d035346_T102:7
Zm00001d035346_T160:7
Zm00001d035346_T174:8
Zm00001d035346_T048:7
Zm00001d035346_T074:7
Zm00001d035346_T041:4
Zm00001d035346_T093:7
Zm00001d035346_T134:7

					

			
		

General Information
CircRNA Name	Zm00001d035346_circ_g.1
ID in PlantcircBase	zma_circ_008895
Alias	Zm06circ00010
Organism	Zea mays
Position	chr6: 22723206-22726707 JBrowse»
Reference genome	AGPv4.38
Type	u-circRNA
Identification method	CIRI2
Parent gene	Zm00001d035346
Parent gene annotation	Probable sucrose-phosphatase 2
Parent gene strand	-
Alternative splicing	NA
Support reads	NA
Tissues	leaf, endosperm
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Zm00001d035346_T176:7 Zm00001d035346_T028:7 Zm00001d035346_T183:9 Zm00001d035346_T027:4 Zm00001d035346_T020:9 Zm00001d035346_T062:4 Zm00001d035346_T045:7 Zm00001d035346_T011:7 Zm00001d035346_T135:7 Zm00001d035346_T091:7 Zm00001d035346_T208:9 Zm00001d035346_T085:7 Zm00001d035346_T019:9 Zm00001d035346_T196:4 Zm00001d035346_T014:8 Zm00001d035346_T031:7 Zm00001d035346_T127:7 Zm00001d035346_T036:5 Zm00001d035346_T119:8 Zm00001d035346_T179:9 Zm00001d035346_T157:7 Zm00001d035346_T156:8 Zm00001d035346_T144:7 Zm00001d035346_T154:8 Zm00001d035346_T071:7 Zm00001d035346_T109:7 Zm00001d035346_T012:7 Zm00001d035346_T163:7 Zm00001d035346_T090:7 Zm00001d035346_T161:7 Zm00001d035346_T147:7 Zm00001d035346_T067:6 Zm00001d035346_T115:7 Zm00001d035346_T081:7 Zm00001d035346_T050:7 Zm00001d035346_T053:7 Zm00001d035346_T139:7 Zm00001d035346_T049:7 Zm00001d035346_T016:5 Zm00001d035346_T129:7 Zm00001d035346_T032:7 Zm00001d035346_T043:7 Zm00001d035346_T084:7 Zm00001d035346_T078:7 Zm00001d035346_T111:7 Zm00001d035346_T116:7 Zm00001d035346_T099:4 Zm00001d035346_T046:7 Zm00001d035346_T155:3 Zm00001d035346_T148:7 Zm00001d035346_T122:7 Zm00001d035346_T169:7 Zm00001d035346_T082:7 Zm00001d035346_T017:3 Zm00001d035346_T005:7 Zm00001d035346_T024:7 Zm00001d035346_T133:7 Zm00001d035346_T068:5 Zm00001d035346_T211:7 Zm00001d035346_T015:8 Zm00001d035346_T008:7 Zm00001d035346_T200:7 Zm00001d035346_T175:8 Zm00001d035346_T104:7 Zm00001d035346_T018:7 Zm00001d035346_T143:7 Zm00001d035346_T042:7 Zm00001d035346_T079:7 Zm00001d035346_T153:7 Zm00001d035346_T013:8 Zm00001d035346_T125:5 Zm00001d035346_T126:9 Zm00001d035346_T023:7 Zm00001d035346_T033:7 Zm00001d035346_T075:7 Zm00001d035346_T107:7 Zm00001d035346_T106:7 Zm00001d035346_T152:7 Zm00001d035346_T039:7 Zm00001d035346_T138:7 Zm00001d035346_T131:7 Zm00001d035346_T030:7 Zm00001d035346_T159:7 Zm00001d035346_T186:9 Zm00001d035346_T083:7 Zm00001d035346_T168:3 Zm00001d035346_T178:9 Zm00001d035346_T167:7 Zm00001d035346_T034:4 Zm00001d035346_T166:7 Zm00001d035346_T069:9 Zm00001d035346_T120:7 Zm00001d035346_T132:9 Zm00001d035346_T103:7 Zm00001d035346_T080:7 Zm00001d035346_T128:7 Zm00001d035346_T146:7 Zm00001d035346_T108:7 Zm00001d035346_T002:7 Zm00001d035346_T096:6 Zm00001d035346_T181:9 Zm00001d035346_T149:7 Zm00001d035346_T022:7 Zm00001d035346_T021:7 Zm00001d035346_T029:7 Zm00001d035346_T184:9 Zm00001d035346_T113:7 Zm00001d035346_T073:7 Zm00001d035346_T037:7 Zm00001d035346_T100:7 Zm00001d035346_T105:7 Zm00001d035346_T087:7 Zm00001d035346_T170:7 Zm00001d035346_T065:5 Zm00001d035346_T076:8 Zm00001d035346_T059:7 Zm00001d035346_T077:7 Zm00001d035346_T177:9 Zm00001d035346_T003:7 Zm00001d035346_T094:8 Zm00001d035346_T010:8 Zm00001d035346_T130:9 Zm00001d035346_T047:9 Zm00001d035346_T121:7 Zm00001d035346_T123:5 Zm00001d035346_T124:5 Zm00001d035346_T164:7 Zm00001d035346_T137:7 Zm00001d035346_T051:7 Zm00001d035346_T185:9 Zm00001d035346_T072:8 Zm00001d035346_T092:7 Zm00001d035346_T089:7 Zm00001d035346_T165:8 Zm00001d035346_T101:7 Zm00001d035346_T044:8 Zm00001d035346_T150:7 Zm00001d035346_T007:9 Zm00001d035346_T063:5 Zm00001d035346_T064:5 Zm00001d035346_T088:7 Zm00001d035346_T052:7 Zm00001d035346_T136:8 Zm00001d035346_T141:7 Zm00001d035346_T180:9 Zm00001d035346_T066:6 Zm00001d035346_T151:7 Zm00001d035346_T114:7 Zm00001d035346_T098:5 Zm00001d035346_T070:7 Zm00001d035346_T056:7 Zm00001d035346_T086:7 Zm00001d035346_T040:7 Zm00001d035346_T173:9 Zm00001d035346_T112:7 Zm00001d035346_T009:8 Zm00001d035346_T061:7 Zm00001d035346_T058:7 Zm00001d035346_T038:7 Zm00001d035346_T142:5 Zm00001d035346_T193:1 Zm00001d035346_T004:7 Zm00001d035346_T140:7 Zm00001d035346_T182:9 Zm00001d035346_T006:9 Zm00001d035346_T095:7 Zm00001d035346_T145:7 Zm00001d035346_T110:7 Zm00001d035346_T035:7 Zm00001d035346_T102:7 Zm00001d035346_T160:7 Zm00001d035346_T174:8 Zm00001d035346_T048:7 Zm00001d035346_T074:7 Zm00001d035346_T041:4 Zm00001d035346_T093:7 Zm00001d035346_T134:7

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GCAGGAAGTGATGTGTATGTCGGCACGTGCAGCTGACTCACGTCCTCCCTCCCTTGTGGCAGTT
TCCATCTCAACCCCTAAGGGATCAATGTATTTGCAActtgttattcagcagaagagtagtgcgg
cagcagtaccgaacgccacctgagaatggcaggagaattaacagttaagtataaagcattgtca
tgaagcaa

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1411
Transcript exons: 22723206-22723252,22723382-22723487,22723691-22723930,22
724228-22724570,22725555-22725905,22726274-22726350,2272
6461-22726707
CTTGTTATTCAGCAGAAGAGTAGTGCGGCAGCAGTACCGAACGCCACCTTCCATCTCCCAGTTA
TCAAACCTCACCAACCAGTTGCTTGTACCGATCGGCGATGTGACCAGTCTGTCCACCCACACCC
GGAAATTCTTGTTGCCCTGTTTGTCAGTGATGCTTTTCAAGTACCGCGCAACTGACGAAGAACC
CAGGAGCTCGCCCCTCCGCCACTTCTCGTAGAGGACGTAGAACTTCACCACCACGTCTGTAGGC
TTAGCGGTGCCTGCCTTCGGATAAGGGAACCCAAGGTCTCTCGCAGAGACGTTGGGTCCTGAAA
TTGCCATGTTGACATGGTGAGTCAAAAAGAGGGAAACCAGCATCCGGTTTTGTCTTGTCCTCGG
CGAACGTACCGCTACTAAAAGCAGCACATACTCCTAACTGTGATAGAGCAAAGACTATATCACG
CGCTGCAACTATCTCAATGATTTTTGACCTTTTCCTCAAGTAAGGGAGTAGCAAAGTGTTCTCC
TTTGGATCATGAGTGTCAAACTCTTCCTACAAGTGACATCAAAGATGCTTTATTAGAACTTAAG
TGCAGTCAACCGATATTACCAAAAAAACATAACTTAAGATAAACTCATTGCTGCACAAACAGTT
GATGCGAAGGTTGTAAGCTCTAATATGGTGATTTCCTGCCACAAAATGATTGTGTTTGTATCAG
CAGGGATGGTCCAACAAATCATCGAAGAAGTTCTGGTCCTGGTGAACTCACGGATCAAATTGGG
AGGCAGGTGAAAGTCGCGCGCGTGGGGCGCATCCCACGCTTGTTCCTCCCCGGCGGCGCGTTCG
GCAACGCCGACGCTGGCGGCAGCCCGCAGGGCAGCATCGGTGGGCATCTCATGGCGGCAGATGG
GGCAGGAGTTGCGGAGCGCGAGCTTGAGCAATATGAAGGCGGCGTGGTAGATGTGGGCGCATAG
CATCTCCCTGGCCTCCGCGCCTAGCTCGAAGGCTTCACTTTACAGTGTCATGGCATCGAAGGAG
GAGAAGGCAGACACAGCCCCAGCGCGGGGCAGGTCGTATGCACTGTCGCCGGCTATTGAGAAGC
TAAAAAACCATAACATTTTGGTAGTCTGGCTTCCCTTGGAACAACACCTTCTCCACCTTCAAAG
AGTGCTCCTCACAAGGTGTCAAAGTATTCAAACTTGCAGAAGTATACATTCCTCACAGGGCAGA
TAGGCCGGGGTATGGATCTAGCCCCTGCATACGTCAAGGTATGGAGTACATATAGATACAGCTC
TTCTGATTTTGTCTCGATCAAGGACAGCGAGGCAGGAAGTGATGTGTATGTCGGCACGTGCAGC
TGACTCACGTCCTCCCTCCCTTGTGGCAGTTTCCATCTCAACCCCTAAGGGATCAATGTATTTG
CAA
						
					

						Genomic sequence
						
							CTTGTTATTCAGCAGAAGAGTAGTGCGGCAGCAGTACCGAACGCCACCTGAGAATGGCAGGAGA
ATTAACAGTTAAGTATAAAGCATTGTCATGAAGCAACATGAAAGAAGTGGCAGCTACTAGATTG
TTAAGAGCCACAGTCGGTTCAGCATGTGAAGGGCTGTTGAGGGCACACCTTCCATCTCCCAGTT
ATCAAACCTCACCAACCAGTTGCTTGTACCGATCGGCGATGTGACCAGTCTGTCCACCCACACC
CGGAAATTCTTGTTGCCCTGTTTGTCCACGTAGCAAGAACTTAGAGCGTCAACAGACGCATGAA
GAGAACGCTCCGATCCAGAAGGATGAATAATCGTACCGTTCGAATGCTACAAAACAAAACAAAA
AAAGGCTAGTTGTATGAAAGTGATCGAGATCAGGACATACGGTGGACATTTACAAATAGAAAAC
CAAGTTACTCTGACAACTGAAAAGACGAAGCACTTACAGTGATGCTTTTCAAGTACCGCGCAAC
TGACGAAGAACCCAGGAGCTCGCCCCTCCGCCACTTCTCGTAGAGGACGTAGAACTTCACCACC
ACGTCTGTAGGCTTAGCGGTGCCTGCCTTCGGATAAGGGAACCCAAGGTCTCTCGCAGAGACGT
TGGGTCCTGAAATTGCCATGTTGACATGGTGAGTCAAAAAGAGGGAAACCAGCATCCGGTTTTG
TCTTGTCCTCGGCGAACGTACCTTGAACAATTGGGAAAAATTTAAGGAAGATGACAGGATAAAA
AAAGCAATTGCATTGACAAAGCATTACTCTATTCGAGTTATTCTGCATCGCAGAGCACTGAAGT
TTTCAGAACCATATACTGATACAGTTTTGAATGAATCATTATTCTTGTTGTAAAATAAATTGCG
GATAACTTCATCTAGACTTCCGTTCAAAAAGCATATTCTCTGATTTGTCTCTGGAAATATGAAA
AGATAATCTCAGGACAGCCAGAGGAAGCAGAAAGGGATTGCAAGAAGGCAAGAAAACCATACCG
CTACTAAAAGCAGCACATACTCCTAACTGTGATAGAGCAAAGACTATATCACGCGCTGCAACTA
TCTCAATGATTTTTGACCTTTTCCTCAAGTAAGGGAGTAGCAAAGTGTTCTCCTTTGGATCATG
AGTGTCAAACTCTTCCTACAAGTGACATCAAAGATGCTTTATTAGAACTTAAGTGCAGTCAACC
GATATTACCAAAAAAACATAACTTAAGATAAACTCATTGCTGCACAAACAGTTGATGCGAAGGT
TGTAAGCTCTAATATGGTGATTTCCTGCCACAAAATGATTGTGTTTGTATCAGCAGGGATGGTC
CAACAAATCATCGAAGAAGTTCTGAAAGAGGAAAAAACAGAGATGGGAAGGTGGACATTAGAAA
CTAAGCCAATACCTGCTCACGCGGCCACAGATACAGCACGAGCGAACAGCACTGAATATGTAAG
CATAGAAGCCTGAAATCCAATATCGTTGCTGTTTTTTTGTGGCTATCAGCAGTATAGTGAAATG
TACAACGATGAGAGAAAACACATTATGTACCGAACCATTGCGAACTAATCAATTACTACAGCAT
TAGAAAGCTTAATCTTGTTTATGTATAAACACACACACATGACGATTGTTGAGTGTGGGACAGA
GGTTATCCACCAAATTAATCCTTAGAAAATTGGACATCATAACCAAATGGAAAGGAATGTCCCA
CGAGCGTAGAGATGCAAACCCTAGTGAACAATAATTGTGAACTGTTTACTGTGCAATAGAAGAG
TGGAAGAAACAATAATTGGAAATTGACGAATGGCAAGATTAATTTGGTAACGCAATAATGTAAG
GCATATAACGTTTTGGACATGATTAAAGTGCCACAACAATCAAACAAGTGGCCTGCCTAGATAC
ACTTTTCGCAGCACTGAGGTGTTCCCTCGCCTTCTCTCCCTTCACAATATTAACTTTGCATTAT
TTGTGAAGTCTTGTTCAACAAATGAGAAAAAGAGAGAATGCAACACCGTAGTCTGTAGAGGTGC
AAAAGTTCAGCGTTACAGTGACAGACTGAACTCTACTTCCAAGTCTATGTATATAAGCACTTTC
GGCGTCTAAAATTTAAGTACACAATTCCACACTATCAGCCAAATAACACTCATGAATTAGACAC
CCCCCACCACTCTCCTACCAGCCAATCAGGAGAGGGCATCAAAATATTTTCACTTCACAATTAA
CCAGCCCTAATAACAGATGTATATATGGGTTTTTGGAAGTAATGTGTTATCGCCTAGAAATTTC
TAGCGATCGAATCTGGGATCTAGCGATGGAATCGTGGGGGCTTACCTGGTCCTGGTGAACTCAC
GGATCAAATTGGGAGGCAGGTGAAAGTCGCGCGCGTGGGGCGCATCCCACGCTTGTTCCTCCCC
GGCGGCGCGTTCGGCAACGCCGACGCTGGCGGCAGCCCGCAGGGCAGCATCGGTGGGCATCTCA
TGGCGGCAGATGGGGCAGGAGTTGCGGAGCGCGAGCTTGAGCAATATGAAGGCGGCGTGGTAGA
TGTGGGCGCATAGCATCTCCCTGGCCTCCGCGCCTAGCTCGAAGGCTTCACTTTACAGTGTCAT
GGCATCGAAGGAGGAGAAGGCAGACACAGCCCCAGCGCGGGGCAGGTCGTATGCACTGTCGCCG
GCTATTGAGAAGCTACAAAAGAACCCAAAAATTGAACTGCACTGCCAGATCGGTCATTGGAACT
TAAACATTACCAAATAGGCAACTACAAGTGGCTAAGAACTGAATAGAAAAGGACTGAAAAAACT
GAATACATCCTGTTGTTGTGAACATTACCAACTGAAAAACTGAATGTAACCTATTAACTTCTGT
CTTGCTGAACATAGATGAAGCAGATTTTTTTGGTTGAACATTACAAAAATAGTTTGCAAGAACA
TGGATTCAATGTTTATTTAAACTTCATTACTTATACTGCAAAACAGAGAGGCACAAAATCAATC
CATGTTGATGAATTATAGGTGGGCTTGGGCGGCAGCAAAAATGGTTAATAAACCGATTACCTAA
AAAACCATAACATTTTGGTAGTCTGGCTTCCCTTGGAACAACACCTTCTCCACCTTCAAAGAGT
GCTCCTCACCTACCATTTAGTAGACACCAAAATAAACCCATGAGCAAGGGCAAACACACGTGAT
TCACATGAGCAGCAGTGACGAAAGAAAAATATCTGAAGGAAGAGTGTGTTCATACAAGGTGTCA
AAGTATTCAAACTTGCAGAAGTATACATTCCTCACAGGGCAGATAGGCCGGGGTATGGATCTAG
CCCCTGCATACGTCAAGGTATGGAGTACATATAGATACAGCTCTTCTGATTTTGTCTCGATCAA
GGACAGCGAGGCAGGAAGTGATGTGTATGTCGGCACGTGCAGCTGACTCACGTCCTCCCTCCCT
TGTGGCAGTTTCCATCTCAACCCCTAAGGGATCAATGTATTTGCAA
						
					

			
		

Sequences
Splice junction sequence	GCAGGAAGTGATGTGTATGTCGGCACGTGCAGCTGACTCACGTCCTCCCTCCCTTGTGGCAGTT TCCATCTCAACCCCTAAGGGATCAATGTATTTGCAActtgttattcagcagaagagtagtgcgg cagcagtaccgaacgccacctgagaatggcaggagaattaacagttaagtataaagcattgtca tgaagcaa
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1411 Transcript exons: 22723206-22723252,22723382-22723487,22723691-22723930,22 724228-22724570,22725555-22725905,22726274-22726350,2272 6461-22726707 CTTGTTATTCAGCAGAAGAGTAGTGCGGCAGCAGTACCGAACGCCACCTTCCATCTCCCAGTTA TCAAACCTCACCAACCAGTTGCTTGTACCGATCGGCGATGTGACCAGTCTGTCCACCCACACCC GGAAATTCTTGTTGCCCTGTTTGTCAGTGATGCTTTTCAAGTACCGCGCAACTGACGAAGAACC CAGGAGCTCGCCCCTCCGCCACTTCTCGTAGAGGACGTAGAACTTCACCACCACGTCTGTAGGC TTAGCGGTGCCTGCCTTCGGATAAGGGAACCCAAGGTCTCTCGCAGAGACGTTGGGTCCTGAAA TTGCCATGTTGACATGGTGAGTCAAAAAGAGGGAAACCAGCATCCGGTTTTGTCTTGTCCTCGG CGAACGTACCGCTACTAAAAGCAGCACATACTCCTAACTGTGATAGAGCAAAGACTATATCACG CGCTGCAACTATCTCAATGATTTTTGACCTTTTCCTCAAGTAAGGGAGTAGCAAAGTGTTCTCC TTTGGATCATGAGTGTCAAACTCTTCCTACAAGTGACATCAAAGATGCTTTATTAGAACTTAAG TGCAGTCAACCGATATTACCAAAAAAACATAACTTAAGATAAACTCATTGCTGCACAAACAGTT GATGCGAAGGTTGTAAGCTCTAATATGGTGATTTCCTGCCACAAAATGATTGTGTTTGTATCAG CAGGGATGGTCCAACAAATCATCGAAGAAGTTCTGGTCCTGGTGAACTCACGGATCAAATTGGG AGGCAGGTGAAAGTCGCGCGCGTGGGGCGCATCCCACGCTTGTTCCTCCCCGGCGGCGCGTTCG GCAACGCCGACGCTGGCGGCAGCCCGCAGGGCAGCATCGGTGGGCATCTCATGGCGGCAGATGG GGCAGGAGTTGCGGAGCGCGAGCTTGAGCAATATGAAGGCGGCGTGGTAGATGTGGGCGCATAG CATCTCCCTGGCCTCCGCGCCTAGCTCGAAGGCTTCACTTTACAGTGTCATGGCATCGAAGGAG GAGAAGGCAGACACAGCCCCAGCGCGGGGCAGGTCGTATGCACTGTCGCCGGCTATTGAGAAGC TAAAAAACCATAACATTTTGGTAGTCTGGCTTCCCTTGGAACAACACCTTCTCCACCTTCAAAG AGTGCTCCTCACAAGGTGTCAAAGTATTCAAACTTGCAGAAGTATACATTCCTCACAGGGCAGA TAGGCCGGGGTATGGATCTAGCCCCTGCATACGTCAAGGTATGGAGTACATATAGATACAGCTC TTCTGATTTTGTCTCGATCAAGGACAGCGAGGCAGGAAGTGATGTGTATGTCGGCACGTGCAGC TGACTCACGTCCTCCCTCCCTTGTGGCAGTTTCCATCTCAACCCCTAAGGGATCAATGTATTTG CAA
Genomic sequence	CTTGTTATTCAGCAGAAGAGTAGTGCGGCAGCAGTACCGAACGCCACCTGAGAATGGCAGGAGA ATTAACAGTTAAGTATAAAGCATTGTCATGAAGCAACATGAAAGAAGTGGCAGCTACTAGATTG TTAAGAGCCACAGTCGGTTCAGCATGTGAAGGGCTGTTGAGGGCACACCTTCCATCTCCCAGTT ATCAAACCTCACCAACCAGTTGCTTGTACCGATCGGCGATGTGACCAGTCTGTCCACCCACACC CGGAAATTCTTGTTGCCCTGTTTGTCCACGTAGCAAGAACTTAGAGCGTCAACAGACGCATGAA GAGAACGCTCCGATCCAGAAGGATGAATAATCGTACCGTTCGAATGCTACAAAACAAAACAAAA AAAGGCTAGTTGTATGAAAGTGATCGAGATCAGGACATACGGTGGACATTTACAAATAGAAAAC CAAGTTACTCTGACAACTGAAAAGACGAAGCACTTACAGTGATGCTTTTCAAGTACCGCGCAAC TGACGAAGAACCCAGGAGCTCGCCCCTCCGCCACTTCTCGTAGAGGACGTAGAACTTCACCACC ACGTCTGTAGGCTTAGCGGTGCCTGCCTTCGGATAAGGGAACCCAAGGTCTCTCGCAGAGACGT TGGGTCCTGAAATTGCCATGTTGACATGGTGAGTCAAAAAGAGGGAAACCAGCATCCGGTTTTG TCTTGTCCTCGGCGAACGTACCTTGAACAATTGGGAAAAATTTAAGGAAGATGACAGGATAAAA AAAGCAATTGCATTGACAAAGCATTACTCTATTCGAGTTATTCTGCATCGCAGAGCACTGAAGT TTTCAGAACCATATACTGATACAGTTTTGAATGAATCATTATTCTTGTTGTAAAATAAATTGCG GATAACTTCATCTAGACTTCCGTTCAAAAAGCATATTCTCTGATTTGTCTCTGGAAATATGAAA AGATAATCTCAGGACAGCCAGAGGAAGCAGAAAGGGATTGCAAGAAGGCAAGAAAACCATACCG CTACTAAAAGCAGCACATACTCCTAACTGTGATAGAGCAAAGACTATATCACGCGCTGCAACTA TCTCAATGATTTTTGACCTTTTCCTCAAGTAAGGGAGTAGCAAAGTGTTCTCCTTTGGATCATG AGTGTCAAACTCTTCCTACAAGTGACATCAAAGATGCTTTATTAGAACTTAAGTGCAGTCAACC GATATTACCAAAAAAACATAACTTAAGATAAACTCATTGCTGCACAAACAGTTGATGCGAAGGT TGTAAGCTCTAATATGGTGATTTCCTGCCACAAAATGATTGTGTTTGTATCAGCAGGGATGGTC CAACAAATCATCGAAGAAGTTCTGAAAGAGGAAAAAACAGAGATGGGAAGGTGGACATTAGAAA CTAAGCCAATACCTGCTCACGCGGCCACAGATACAGCACGAGCGAACAGCACTGAATATGTAAG CATAGAAGCCTGAAATCCAATATCGTTGCTGTTTTTTTGTGGCTATCAGCAGTATAGTGAAATG TACAACGATGAGAGAAAACACATTATGTACCGAACCATTGCGAACTAATCAATTACTACAGCAT TAGAAAGCTTAATCTTGTTTATGTATAAACACACACACATGACGATTGTTGAGTGTGGGACAGA GGTTATCCACCAAATTAATCCTTAGAAAATTGGACATCATAACCAAATGGAAAGGAATGTCCCA CGAGCGTAGAGATGCAAACCCTAGTGAACAATAATTGTGAACTGTTTACTGTGCAATAGAAGAG TGGAAGAAACAATAATTGGAAATTGACGAATGGCAAGATTAATTTGGTAACGCAATAATGTAAG GCATATAACGTTTTGGACATGATTAAAGTGCCACAACAATCAAACAAGTGGCCTGCCTAGATAC ACTTTTCGCAGCACTGAGGTGTTCCCTCGCCTTCTCTCCCTTCACAATATTAACTTTGCATTAT TTGTGAAGTCTTGTTCAACAAATGAGAAAAAGAGAGAATGCAACACCGTAGTCTGTAGAGGTGC AAAAGTTCAGCGTTACAGTGACAGACTGAACTCTACTTCCAAGTCTATGTATATAAGCACTTTC GGCGTCTAAAATTTAAGTACACAATTCCACACTATCAGCCAAATAACACTCATGAATTAGACAC CCCCCACCACTCTCCTACCAGCCAATCAGGAGAGGGCATCAAAATATTTTCACTTCACAATTAA CCAGCCCTAATAACAGATGTATATATGGGTTTTTGGAAGTAATGTGTTATCGCCTAGAAATTTC TAGCGATCGAATCTGGGATCTAGCGATGGAATCGTGGGGGCTTACCTGGTCCTGGTGAACTCAC GGATCAAATTGGGAGGCAGGTGAAAGTCGCGCGCGTGGGGCGCATCCCACGCTTGTTCCTCCCC GGCGGCGCGTTCGGCAACGCCGACGCTGGCGGCAGCCCGCAGGGCAGCATCGGTGGGCATCTCA TGGCGGCAGATGGGGCAGGAGTTGCGGAGCGCGAGCTTGAGCAATATGAAGGCGGCGTGGTAGA TGTGGGCGCATAGCATCTCCCTGGCCTCCGCGCCTAGCTCGAAGGCTTCACTTTACAGTGTCAT GGCATCGAAGGAGGAGAAGGCAGACACAGCCCCAGCGCGGGGCAGGTCGTATGCACTGTCGCCG GCTATTGAGAAGCTACAAAAGAACCCAAAAATTGAACTGCACTGCCAGATCGGTCATTGGAACT TAAACATTACCAAATAGGCAACTACAAGTGGCTAAGAACTGAATAGAAAAGGACTGAAAAAACT GAATACATCCTGTTGTTGTGAACATTACCAACTGAAAAACTGAATGTAACCTATTAACTTCTGT CTTGCTGAACATAGATGAAGCAGATTTTTTTGGTTGAACATTACAAAAATAGTTTGCAAGAACA TGGATTCAATGTTTATTTAAACTTCATTACTTATACTGCAAAACAGAGAGGCACAAAATCAATC CATGTTGATGAATTATAGGTGGGCTTGGGCGGCAGCAAAAATGGTTAATAAACCGATTACCTAA AAAACCATAACATTTTGGTAGTCTGGCTTCCCTTGGAACAACACCTTCTCCACCTTCAAAGAGT GCTCCTCACCTACCATTTAGTAGACACCAAAATAAACCCATGAGCAAGGGCAAACACACGTGAT TCACATGAGCAGCAGTGACGAAAGAAAAATATCTGAAGGAAGAGTGTGTTCATACAAGGTGTCA AAGTATTCAAACTTGCAGAAGTATACATTCCTCACAGGGCAGATAGGCCGGGGTATGGATCTAG CCCCTGCATACGTCAAGGTATGGAGTACATATAGATACAGCTCTTCTGATTTTGTCTCGATCAA GGACAGCGAGGCAGGAAGTGATGTGTATGTCGGCACGTGCAGCTGACTCACGTCCTCCCTCCCT TGTGGCAGTTTCCATCTCAACCCCTAAGGGATCAATGTATTTGCAA

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.146209581

Conservation Information
Conserved circRNAs	NA
PMCS	0.146209581

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							22726619-22723717(+)
22723902-22726695(-)
						
						Potential amino acid sequence
						
							MCMSARAADSRPPSLVAVSISTPKGSMYLQLVIQQKSSAAAVPNATFHLPVIKPHQPVACTDRR
CDQSVHPHPEILVALFVSDAFQVPRN*(+)
MLVSLFLTHHVNMAISGPNVSARDLGFPYPKAGTAKPTDVVVKFYVLYEKWRRGELLGSSSVAR
YLKSITDKQGNKNFRVWVDRLVTSPIGTSNWLVRFDNWEMEGGVRYCCRTTLLLNNKLQIH*(-
)
						
						Sponge-miRNAs
						
							zma-miR482-5p 						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	22726619-22723717(+) 22723902-22726695(-)
Potential amino acid sequence	MCMSARAADSRPPSLVAVSISTPKGSMYLQLVIQQKSSAAAVPNATFHLPVIKPHQPVACTDRR CDQSVHPHPEILVALFVSDAFQVPRN(+) MLVSLFLTHHVNMAISGPNVSARDLGFPYPKAGTAKPTDVVVKFYVLYEKWRRGELLGSSSVAR YLKSITDKQGNKNFRVWVDRLVTSPIGTSNWLVRFDNWEMEGGVRYCCRTTLLLNNKLQIH(- )
Sponge-miRNAs	zma-miR482-5p
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Han et al., 2020

circRNA

Detail information of Zm00001d035346_circ_g.1

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