Detail information of AT2G37690_circ_g.6


General Information
CircRNA Name AT2G37690_circ_g.6
ID in PlantcircBase ath_circ_017116
Alias NA
Organism Arabidpsis thaliana
Position chr2: 15808404-15808577  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, circRNA_finder, CIRI-full
Parent gene AT2G37690
Parent gene annotation Phosphoribosylaminoimidazole carboxylase like protein
Parent gene strand +
Alternative splicing AT2G37690_circ_g.7 AT2G37690_circ_g.8
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G37690.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGCGAGCTGTGGTTGGTCTTCCACTTGGTGATCCGTCAATGAGAACTCCGGCGTCCATTATGT
ACAATATTCTGGGAGAAGATGATattctgctaaacgaagttgcacctagaccacacaacagtgg
ccatcaaacgatcgagtgctgttatacttcacagtttgaacaacac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 174
Transcript exons: 15808404-15808577
ATTCTGCTAAACGAAGTTGCACCTAGACCACACAACAGTGGCCATCAAACGATCGAGTGCTGTT
ATACTTCACAGTTTGAACAACACTTGCGAGCTGTGGTTGGTCTTCCACTTGGTGATCCGTCAAT
GAGAACTCCGGCGTCCATTATGTACAATATTCTGGGAGAAGATGAT

Genomic sequence ATTCTGCTAAACGAAGTTGCACCTAGACCACACAACAGTGGCCATCAAACGATCGAGTGCTGTT
ATACTTCACAGTTTGAACAACACTTGCGAGCTGTGGTTGGTCTTCCACTTGGTGATCCGTCAAT
GAGAACTCCGGCGTCCATTATGTACAATATTCTGGGAGAAGATGAT
Conservation Information
Conserved circRNAs NA
PMCS 0.551493484
Functional Information
Coding potential Y
Potential coding position 15808530-15808574(+)
Potential amino acid sequence MRTPASIMYNILGEDDILLNEVAPRPHNSGHQTIECCYTSQFEQHLRAVVGLPLGDPSMRTPAS
IMYNILGEDDILLNEVAPRPHNSGHQTIECCYTSQFEQHLRAVVGLPLGDPSMRTPASIMYNIL
GEDDILLNEVAPRPHNSGHQTIECCYTSQFEQHLRAVVGLPLGDPSMRTPASIMYNILGEDD(+
)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017