Plant Circular RNA Database

Detail information of Csa3G117930_circ_g.1

			
						 General Information
					
						CircRNA Name
						Csa3G117930_circ_g.1
					
						ID in PlantcircBase
						csa_circ_001456
					
						Alias
						Chr3:6409572_6414552
					
						Organism
						
							Cucumis sativus						
					
						Position
						
							chrChr3: 6409572-6414552  JBrowse»						
					
						Reference genome
						
							Cucumis sativus v1.5						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRI2
					
						Parent gene
						
							Csa3G117930						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						-
					
						Alternative splicing
						
							Csa3G117930_circ_g.4 						
					
						Support reads
						NA
					
						Tissues
						leaf,root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Csa3G117930.1:15

General Information
CircRNA Name	Csa3G117930_circ_g.1
ID in PlantcircBase	csa_circ_001456
Alias	Chr3:6409572_6414552
Organism	Cucumis sativus
Position	chrChr3: 6409572-6414552 JBrowse»
Reference genome	Cucumis sativus v1.5
Type	e-circRNA
Identification method	CIRI2
Parent gene	Csa3G117930
Parent gene annotation	NA
Parent gene strand	-
Alternative splicing	Csa3G117930_circ_g.4
Support reads	NA
Tissues	leaf,root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Csa3G117930.1:15

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CCATATGAACATTATACTCTGCAAGATTCAATAATTCACTGCGAATAAGGCCAAGAGTGATGTC
CTTGTTGTACTTCCGTTCTTCCTCAGAGTAAATCACcttaataagctcaatgaaagtaatcagc
agaccccatggatgaggtcgattaacaatgaggcgttccaacaacacccttgttatctgctcct
ggataatt

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTTAATAAGCTCAATGAAAGTAATCAGCAGACCCCATGGATGAGGTCGATTAACAATGAGGCGT
TCCAACAACACCCTTGTTATCTGCTCCTGGATAATTTCCTGCCATTGTTCCAATAACACATTAT
TTATTATTTACTTTTTTATATAAAAGAATACTAAGGGAAGAAAAAGTGCAAACAGAATAACTGA
CCTGAGTTGATTCTGCAAATAAGTATAGGAGAACAAAAGAAAAGTAATGAGTGTGGGTATTCGG
ATATCGAAGTTGGTTAGCAACAGCATTGAGGAAGAGGTAACGCCCTTCAGTATCCAACTCCACA
ATCAGAGTCTGAAAAATATCGAGAGCAGCTCCCACCAAGAATACTGCTAATGTAACAGTATTAG
CACTTGACTGCGCATGAGGACTTCTTGCCTGAAGTTGTTGGATGGCCTGAACAGTTGTATAAAC
AACATTACCATCTTTTAAGTTCGAAACAGGATAATGGATCGAAAATTGAAGAGAAGTCCTAAAA
CTGTTACACGCTGACATTAGCATGCAGAATGTATAACTGAAGCAAACCGATTGAGAAAAATATA
GCCAACAATTCCCAACTTCCAATCACTAAATGCTCATTTTCCAGACTACAGAAACTAGTGCTAA
GCATTATAGCACAGCATCAGCCAGAGATAATCACGAAGTATAAAAACGGTTTGAAAGGTAGAGA
ACCAAGTACCTGCATCCCAACGTAAAGTACAAGGGAGTTAATCAAAGGCACATTGTAACGGGTC
CCAGCAGAAGCAGCTTCACTGGGAGGAAGTAGCAATTTCTGCTTCAGATCAGCCAGAAACGAGG
ATCCTTGTTGCCTGGTCTGCAGAGGGAGGAAAAAAGGGAAAGAAGAGTAATGCAGATGTAGGTG
AGAAAAATATAGTACACGAAAACAAAGGCGATAAAGGATGGACAGCCAAGAGAAAAAAAAATGC
CTAAAATAAAGATTCAAAATTTTACTTAAAAATAACAGTAAAATATCAATAGTAGTAGAAAAGA
AACTATCAGCAGTTTGTTAGATACCTAGATTAGTATAGGGTAGGGGTAAAAGGGTAATTAGATT
TGTTGGTAGTTAGTTGGTTATAAATAGGAAGTTGGGGAGGGAAGAAGGGTATGAAGAATTTGGT
GAAGAATTAGGGCTGCAACATTCCTTGAAAAAGTGGAAGCGCAGAGGATTAGGGTAATTTTCTG
TTTGAGATATCAGTGTTCTATCACAGTTCTTGCCCTTAACAATCTTGCTTAAACTACAAACAAA
AACGATGAAGCTTGTTACTTGTTCACAAATGAGAACCTTTTTTTCAATTGTTGGGGTTTGTTAC
AAGTTATGCGGTTTTCTTTAATTCTATCTGTAAAATGCATTTATGTTAAGAGTTGGCTGTTTTT
AGTAAGGCTTCATAGCCGTTACCTACAGGTTGTCAAGGAATTAGTTATTCACTTCCACACCTTT
AAATAGCCGTAGCTAGGCTGAATTAACTCATTCGTTCATTCAATAAGGAAATCTTGGACTTCTC
AATTGTTCAACAACAAGAATCTGAGTATTGTGTTGCCGTTTTATTATTTTTTTTTTTATAAGAA
ACATGCATATTCATATAAATAGTGAATGCCAAAAGAAGTACCTTGAGGTACTCATCCACATCAG
CCTTCATCTGTTTCAATTTAAGAGCTCCATCCACCTCAGACAGAATACGTGGAGATTGATTGAT
TTCCGCAAGCAAGTCAATCTGCATGTGATGGGAACTTGTTTAGTACCTCATAATTTATTTCCAT
AATCAAAATGCTCGCTAGAATATGAAGACTAGACCTTCAAGTTGGGAGTGGATGGATCTGGAAG
TCTCATGTTTCGAGGAAACGCACTAAGGATGATATTTCGCATCTGAATGCAGCTAGGAGGAATC
ACATCGCAGAAGGTAAAATGATAATCACATAGAAACTCGGGGAAATCGTGAAGCAAGACTAGCA
ACACCCTAAGTGTGCCTTTATAAAGAAAATGAACCTGCAAAAAGTAGACGATAGACAATAAGTG
CCACTACAAAAGAAACACTCAGCCACTAATGAGGTGGATGACAGAACAAAAAAGAAGGGCAAAC
CGGTGGTCCAAGCTCAGCATTCCGCAAAAAAGGTTCCATGAATTGAAACATGTCTACAAGCAAA
CGTTGGATGTAAGGCCAACCCTTCTGACTATTCCCAGTAAGCATCTTTGGCATAAAACTTCTAT
GACTAACCAACTCAAGCCAGGCATAGCTGGGGAAAGTATCAACCGCAGGGAGTAAGTCATTGCA
ATAATAGAAAATTCAAGAAAAGAACAAAACGTCTATGCAATCTTGAATACACATCCACAGATAT
AGGCCAAGATCCTTGTTGAATATTTTTTTCCCTCTAAATAAAACTATTGATTCAGAAATGAGAA
TAATATAAAAAATTTACAAAAAAAATGATAGCCCATTAGAATTGGTACCACTAGAGATCTAATT
ACAAAATCTAATTCCCTATATACCAATTAGTTCCTCGATCAAAGATCAAATTAGGAGACAAAGA
ACAGACGCTAACCTGAATGCTGGAATCTTAAGAGGGTGCAAAGCATGAAATGCATTAGCAAAGG
CTGTCAATATCTGCAACGTGGTGACGGAAAATTTAGATTATTCATGAAGGAAAGAAAGAAGCAA
TTATTAAGAACGAGTGATTTCATACCTGAAAGTTAGCACCATCAACAATAGGTTCTAGAGACCC
CAGGTCAGGAAGCCAGTTAATAAACAATCTAAAATATGGCCTTGGATTGAATGATCCTTTCTTC
TCCTCGGCATCTTTCTGAATAAATCTTACGGTCACTGCCAGAATCTGTAGCAATACAGAATAGA
ATTACTAAGTCATGAGCAAACATGCATAATATAAGTAAGGCACAAAGTAGATCTATAGCCCATT
ACCCTAGATAAAAGAGCCGTTTTACCAGATCCCTGGAAATAAAAGAACAGAACATGTCAGAAGC
AAATAGCTTGTATTCAAGATGGTGATATAGATACAGTACACACACACACACACACACGGGTATA
TGAAGAAAAAAAAAATTAATTGAAAAAGGACCAAAAAAGGAGCAGGGCAATATTTTACAACAGC
AAGATGCATGTGTGTTCTCACCTTCAAGATTGAAAATACAAGCTTGGCATAAATGTCAATTGCA
AGGAAGGAAAGATTCTGTATTTGTTGGGGTGATTGTAATGCACCCGAGTTAATTACTTCAGATG
ATAAGCAATGTGCCACAGAAATCTCCTACATTGCCAACGATACAGTAAGTTGGAAAAATAAGAA
TATGATTCAATGCTAAATAGAAATTAGAAAAACAAAACAAATTAAAGCATACCGTGAGTAAACG
GAAAAACCGATCAGTCATATCATCCCCTTTCAGAAGTCCATTCTGATGTAATTGCAATATGAAA
TGATTGAAGGCAGCTTCATTAGCACCAGGAAGCTCACATATTCGGTACCATTCAGCAAATAGAA
TTGACACCTACAAGATGTAAATTGAAATCTTGAAATCCATCTGTTGGTTATTGTTGGAAGAACA
AAACAATTGGGGACATTCTAAGTTCTAATGTTCATTCACATATTTACAAAAAGATCAATAGCTT
TTCTGCATTTACTTGGGAGGGTAAGATTGCAAGAGCCAAAGCCCAAACGTGGATCCAAAACAGA
GAAGATATGACATGGATACAATTAGTCATCTAAGACAAAGTCATGGCAACGGAACAGTAGTAAA
TAAATAATTTTTTAAACATATATCACCTAACATTTCAGTGATGTTGGCGTAAGATGTTTACATA
CTCTCGTAAGAAATTCGTAAAAAAATAATGAACTATGTAACAATGCAAGGGCCTTTTTTCTTTT
TCCTTTCCCTTTATTTTTGAAACAACATATCGAGAGGTTCAAATATTAATAATTTATTTCTAAT
AATAAGATGTTTTCTATCAAAAGATTCAACAAACACCAAAAACTTTATTTTTTTTAAATGGTTC
AATATCATGTAATAAATAAGGAAATTTGAAACAGAAATATTTCTGAATTTATATGTTCAATAAT
GTAAGTTCGATATTACACCTTAAGAGAACTACCTCTAATGGCGTTTAAATCCCTACAGAGTAAC
TCCGACATTCACACTCCAAAAACTAATTTCTACAATTTCAAACAGTTCTTGTCTCTTATAAAAG
CTCTCAGAGCATTAAATGATGATATAAAAATAACATCATAAGATATCAGAGGATAATCAAATTA
CCTGATCGCGAAAACCGGCTGGATCTTCAGATTCAAGAATACTAGAATCTTCTCTGTTCGTTAT
GGAAGGTACAGGAGCCTGTTACAGAAAAAGGCAACAAAACTAAGGAATCGAGAAAACACAGACA
CATCTCTCGTTGTTATAGTAATTATAGCAGTCTTCTTAAGAAACCTTCTTGTCTCTGGCAAGTC
TAGCCTTATCGTCCTTCCCAACATTAACCCCAGATATAGCAGCTACACTTGTAGCAGGATTCTT
GATTATCTCAACCAGATGCTGCAAAGGCTCAGAAGATCCAGGTTTTGCAGCAACCTACCAATTA
AACGACAAAGAGACTTTAGAAAAGTACCAAGGAAGAGTCCTCCAGTAACTCACATACAACACAA
ACCTTAGCTAATGCATCAACAAGATTGTGAAGTTCTGAAATTACACTCGATTCATCCACAACCA
AGGTTTGGAGGAGTGATATAGCAAACTCTGTTGCAGCCTCTGACAAATTGCTTAAATGGTCAGT
TCATATTGACACCATAAAAAAAGAAAATATTAAGAAATCAATATGTTCACTTACTATTCCTGCC
TCCATCAATTAGTTTCGCCATATGAACATTATACTCTGCAAGATTCAATAATTCACTGCGAATA
AGGCCAAGAGTGATGTCCTTGTTGTACTTCCGTTCTTCCTCAGAGTAAATCAC
						
					

			
		

Sequences
Splice junction sequence	CCATATGAACATTATACTCTGCAAGATTCAATAATTCACTGCGAATAAGGCCAAGAGTGATGTC CTTGTTGTACTTCCGTTCTTCCTCAGAGTAAATCACcttaataagctcaatgaaagtaatcagc agaccccatggatgaggtcgattaacaatgaggcgttccaacaacacccttgttatctgctcct ggataatt
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTTAATAAGCTCAATGAAAGTAATCAGCAGACCCCATGGATGAGGTCGATTAACAATGAGGCGT TCCAACAACACCCTTGTTATCTGCTCCTGGATAATTTCCTGCCATTGTTCCAATAACACATTAT TTATTATTTACTTTTTTATATAAAAGAATACTAAGGGAAGAAAAAGTGCAAACAGAATAACTGA CCTGAGTTGATTCTGCAAATAAGTATAGGAGAACAAAAGAAAAGTAATGAGTGTGGGTATTCGG ATATCGAAGTTGGTTAGCAACAGCATTGAGGAAGAGGTAACGCCCTTCAGTATCCAACTCCACA ATCAGAGTCTGAAAAATATCGAGAGCAGCTCCCACCAAGAATACTGCTAATGTAACAGTATTAG CACTTGACTGCGCATGAGGACTTCTTGCCTGAAGTTGTTGGATGGCCTGAACAGTTGTATAAAC AACATTACCATCTTTTAAGTTCGAAACAGGATAATGGATCGAAAATTGAAGAGAAGTCCTAAAA CTGTTACACGCTGACATTAGCATGCAGAATGTATAACTGAAGCAAACCGATTGAGAAAAATATA GCCAACAATTCCCAACTTCCAATCACTAAATGCTCATTTTCCAGACTACAGAAACTAGTGCTAA GCATTATAGCACAGCATCAGCCAGAGATAATCACGAAGTATAAAAACGGTTTGAAAGGTAGAGA ACCAAGTACCTGCATCCCAACGTAAAGTACAAGGGAGTTAATCAAAGGCACATTGTAACGGGTC CCAGCAGAAGCAGCTTCACTGGGAGGAAGTAGCAATTTCTGCTTCAGATCAGCCAGAAACGAGG ATCCTTGTTGCCTGGTCTGCAGAGGGAGGAAAAAAGGGAAAGAAGAGTAATGCAGATGTAGGTG AGAAAAATATAGTACACGAAAACAAAGGCGATAAAGGATGGACAGCCAAGAGAAAAAAAAATGC CTAAAATAAAGATTCAAAATTTTACTTAAAAATAACAGTAAAATATCAATAGTAGTAGAAAAGA AACTATCAGCAGTTTGTTAGATACCTAGATTAGTATAGGGTAGGGGTAAAAGGGTAATTAGATT TGTTGGTAGTTAGTTGGTTATAAATAGGAAGTTGGGGAGGGAAGAAGGGTATGAAGAATTTGGT GAAGAATTAGGGCTGCAACATTCCTTGAAAAAGTGGAAGCGCAGAGGATTAGGGTAATTTTCTG TTTGAGATATCAGTGTTCTATCACAGTTCTTGCCCTTAACAATCTTGCTTAAACTACAAACAAA AACGATGAAGCTTGTTACTTGTTCACAAATGAGAACCTTTTTTTCAATTGTTGGGGTTTGTTAC AAGTTATGCGGTTTTCTTTAATTCTATCTGTAAAATGCATTTATGTTAAGAGTTGGCTGTTTTT AGTAAGGCTTCATAGCCGTTACCTACAGGTTGTCAAGGAATTAGTTATTCACTTCCACACCTTT AAATAGCCGTAGCTAGGCTGAATTAACTCATTCGTTCATTCAATAAGGAAATCTTGGACTTCTC AATTGTTCAACAACAAGAATCTGAGTATTGTGTTGCCGTTTTATTATTTTTTTTTTTATAAGAA ACATGCATATTCATATAAATAGTGAATGCCAAAAGAAGTACCTTGAGGTACTCATCCACATCAG CCTTCATCTGTTTCAATTTAAGAGCTCCATCCACCTCAGACAGAATACGTGGAGATTGATTGAT TTCCGCAAGCAAGTCAATCTGCATGTGATGGGAACTTGTTTAGTACCTCATAATTTATTTCCAT AATCAAAATGCTCGCTAGAATATGAAGACTAGACCTTCAAGTTGGGAGTGGATGGATCTGGAAG TCTCATGTTTCGAGGAAACGCACTAAGGATGATATTTCGCATCTGAATGCAGCTAGGAGGAATC ACATCGCAGAAGGTAAAATGATAATCACATAGAAACTCGGGGAAATCGTGAAGCAAGACTAGCA ACACCCTAAGTGTGCCTTTATAAAGAAAATGAACCTGCAAAAAGTAGACGATAGACAATAAGTG CCACTACAAAAGAAACACTCAGCCACTAATGAGGTGGATGACAGAACAAAAAAGAAGGGCAAAC CGGTGGTCCAAGCTCAGCATTCCGCAAAAAAGGTTCCATGAATTGAAACATGTCTACAAGCAAA CGTTGGATGTAAGGCCAACCCTTCTGACTATTCCCAGTAAGCATCTTTGGCATAAAACTTCTAT GACTAACCAACTCAAGCCAGGCATAGCTGGGGAAAGTATCAACCGCAGGGAGTAAGTCATTGCA ATAATAGAAAATTCAAGAAAAGAACAAAACGTCTATGCAATCTTGAATACACATCCACAGATAT AGGCCAAGATCCTTGTTGAATATTTTTTTCCCTCTAAATAAAACTATTGATTCAGAAATGAGAA TAATATAAAAAATTTACAAAAAAAATGATAGCCCATTAGAATTGGTACCACTAGAGATCTAATT ACAAAATCTAATTCCCTATATACCAATTAGTTCCTCGATCAAAGATCAAATTAGGAGACAAAGA ACAGACGCTAACCTGAATGCTGGAATCTTAAGAGGGTGCAAAGCATGAAATGCATTAGCAAAGG CTGTCAATATCTGCAACGTGGTGACGGAAAATTTAGATTATTCATGAAGGAAAGAAAGAAGCAA TTATTAAGAACGAGTGATTTCATACCTGAAAGTTAGCACCATCAACAATAGGTTCTAGAGACCC CAGGTCAGGAAGCCAGTTAATAAACAATCTAAAATATGGCCTTGGATTGAATGATCCTTTCTTC TCCTCGGCATCTTTCTGAATAAATCTTACGGTCACTGCCAGAATCTGTAGCAATACAGAATAGA ATTACTAAGTCATGAGCAAACATGCATAATATAAGTAAGGCACAAAGTAGATCTATAGCCCATT ACCCTAGATAAAAGAGCCGTTTTACCAGATCCCTGGAAATAAAAGAACAGAACATGTCAGAAGC AAATAGCTTGTATTCAAGATGGTGATATAGATACAGTACACACACACACACACACACGGGTATA TGAAGAAAAAAAAAATTAATTGAAAAAGGACCAAAAAAGGAGCAGGGCAATATTTTACAACAGC AAGATGCATGTGTGTTCTCACCTTCAAGATTGAAAATACAAGCTTGGCATAAATGTCAATTGCA AGGAAGGAAAGATTCTGTATTTGTTGGGGTGATTGTAATGCACCCGAGTTAATTACTTCAGATG ATAAGCAATGTGCCACAGAAATCTCCTACATTGCCAACGATACAGTAAGTTGGAAAAATAAGAA TATGATTCAATGCTAAATAGAAATTAGAAAAACAAAACAAATTAAAGCATACCGTGAGTAAACG GAAAAACCGATCAGTCATATCATCCCCTTTCAGAAGTCCATTCTGATGTAATTGCAATATGAAA TGATTGAAGGCAGCTTCATTAGCACCAGGAAGCTCACATATTCGGTACCATTCAGCAAATAGAA TTGACACCTACAAGATGTAAATTGAAATCTTGAAATCCATCTGTTGGTTATTGTTGGAAGAACA AAACAATTGGGGACATTCTAAGTTCTAATGTTCATTCACATATTTACAAAAAGATCAATAGCTT TTCTGCATTTACTTGGGAGGGTAAGATTGCAAGAGCCAAAGCCCAAACGTGGATCCAAAACAGA GAAGATATGACATGGATACAATTAGTCATCTAAGACAAAGTCATGGCAACGGAACAGTAGTAAA TAAATAATTTTTTAAACATATATCACCTAACATTTCAGTGATGTTGGCGTAAGATGTTTACATA CTCTCGTAAGAAATTCGTAAAAAAATAATGAACTATGTAACAATGCAAGGGCCTTTTTTCTTTT TCCTTTCCCTTTATTTTTGAAACAACATATCGAGAGGTTCAAATATTAATAATTTATTTCTAAT AATAAGATGTTTTCTATCAAAAGATTCAACAAACACCAAAAACTTTATTTTTTTTAAATGGTTC AATATCATGTAATAAATAAGGAAATTTGAAACAGAAATATTTCTGAATTTATATGTTCAATAAT GTAAGTTCGATATTACACCTTAAGAGAACTACCTCTAATGGCGTTTAAATCCCTACAGAGTAAC TCCGACATTCACACTCCAAAAACTAATTTCTACAATTTCAAACAGTTCTTGTCTCTTATAAAAG CTCTCAGAGCATTAAATGATGATATAAAAATAACATCATAAGATATCAGAGGATAATCAAATTA CCTGATCGCGAAAACCGGCTGGATCTTCAGATTCAAGAATACTAGAATCTTCTCTGTTCGTTAT GGAAGGTACAGGAGCCTGTTACAGAAAAAGGCAACAAAACTAAGGAATCGAGAAAACACAGACA CATCTCTCGTTGTTATAGTAATTATAGCAGTCTTCTTAAGAAACCTTCTTGTCTCTGGCAAGTC TAGCCTTATCGTCCTTCCCAACATTAACCCCAGATATAGCAGCTACACTTGTAGCAGGATTCTT GATTATCTCAACCAGATGCTGCAAAGGCTCAGAAGATCCAGGTTTTGCAGCAACCTACCAATTA AACGACAAAGAGACTTTAGAAAAGTACCAAGGAAGAGTCCTCCAGTAACTCACATACAACACAA ACCTTAGCTAATGCATCAACAAGATTGTGAAGTTCTGAAATTACACTCGATTCATCCACAACCA AGGTTTGGAGGAGTGATATAGCAAACTCTGTTGCAGCCTCTGACAAATTGCTTAAATGGTCAGT TCATATTGACACCATAAAAAAAGAAAATATTAAGAAATCAATATGTTCACTTACTATTCCTGCC TCCATCAATTAGTTTCGCCATATGAACATTATACTCTGCAAGATTCAATAATTCACTGCGAATA AGGCCAAGAGTGATGTCCTTGTTGTACTTCCGTTCTTCCTCAGAGTAAATCAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.101295831

Conservation Information
Conserved circRNAs	NA
PMCS	0.101295831

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							6414458-6409574(-)
						
					

						Potential amino acid sequence
						
							MAKLIDGGRNKAATEFAISLLQTLVVDESSVISELHNLVDALAKVAAKPGSSEPLQHLVEIIKN
PATSVAAISGVNVGKDDKARLARDKKAPVPSITNREDSSILESEDPAGFRDQVSILFAEWYRIC
ELPGANEAAFNHFILQLHQNGLLKGDDMTDRFFRLLTEISVAHCLSSEVINSGALQSPQQIQNL
SFLAIDIYAKLVFSILKGSGKTALLSRILAVTVRFIQKDAEEKKGSFNPRPYFRLFINWLPDLG
SLEPIVDGANFQILTAFANAFHALHPLKIPAFSYAWLELVSHRSFMPKMLTGNSQKGWPYIQRL
LVDMFQFMEPFLRNAELGPPVHFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNI
ILSAFPRNMRLPDPSTPNLKIDLLAEINQSPRILSEVDGALKLKQMKADVDEYLKTRQQGSSFL
ADLKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIQQLQARSPHAQSSANTVTLAVFLVGA
ALDIFQTLIVELDTEGRYLFLNAVANQLRYPNTHTHYFSFVLLYLFAESTQEIIQEQITRVLLE
RLIVNRPHPWGLLITFIELIKVIYSEEERKYNKDITLGLIRSELLNLAEYNVHMAKLIDGGRNK
AATEFAISLLQTLVVDESSVISELHNLVDALAKVAAKPGSSEPLQHLVEIIKNPATSVAAISGV
NVGKDDKARLARDKKAPVPSITNREDSSILESEDPAGFRDQVSILFAEWYRICELPGANEAAFN
HFILQLHQNGLLKGDDMTDRFFRLLTEISVAHCLSSEVINSGALQSPQQIQNLSFLAIDIYAKL
VFSILKGSGKTALLSRILAVTVRFIQKDAEEKKGSFNPRPYFRLFINWLPDLGSLEPIVDGANF
QILTAFANAFHALHPLKIPAFSYAWLELVSHRSFMPKMLTGNSQKGWPYIQRLLVDMFQFMEPF
LRNAELGPPVHFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRL
PDPSTPNLKIDLLAEINQSPRILSEVDGALKLKQMKADVDEYLKTRQQGSSFLADLKQKLLLPP
SEAASAGTRYNVPLINSLVLYVGMQAIQQLQARSPHAQSSANTVTLAVFLVGAALDIFQTLIVE
LDTEGRYLFLNAVANQLRYPNTHTHYFSFVLLYLFAESTQEIIQEQITRVLLERLIVNRPHPWG
LLITFIELIKVIYSEEERKYNKDITLGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQ
TLVVDESSVISELHNLVDALAKVAAKPGSSEPLQHLVEIIKNPATSVAAISGVNVGKDDKARLA
RDKKAPVPSITNREDSSILESEDPAGFRDQVSILFAEWYRICELPGANEAAFNHFILQLHQNGL
LKGDDMTDRFFRLLTEISVAHCLSSEVINSGALQSPQQIQNLSFLAIDIYAKLVFSILKGSGKT
ALLSRILAVTVRFIQKDAEEKKGSFNPRPYFRLFINWLPDLGSLEPIVDGANFQILTAFANAFH
ALHPLKIPAFSYAWLELVSHRSFMPKMLTGNSQKGWPYIQRLLVDMFQFMEPFLRNAELGPPVH
FLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKID
LLAEINQSPRILSEVDGALKLKQMKADVDEYLKTRQQGSSFLADLKQKLLLPPSEAASAGTRYN
VPLINSLVLYVGMQAIQQLQARSPHAQSSANTVTLAVFLVGAALDIFQTLIVELDTEGRYLFLN
AVANQLRYPNTHTHYFSFVLLYLFAESTQEIIQEQITRVLLERLIVNRPHPWGLLITFIELIKV
IYSEEERKYNKDITLGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVVDESSVIS
ELHNLVDALAKVAAKPGSSEPLQHLVEIIKNPATSVAAISGVNVGKDDKARLARDKKAPVPSIT
NREDSSILESEDPAGFRDQVSILFAEWYRICELPGANEAAFNHFILQLHQNGLLKGDDMTDRFF
RLLTEISVAHCLSSEVINSGALQSPQQIQNLSFLAIDIYAKLVFSILKGSGKTALLSRILAVTV
RFIQKDAEEKKGSFNPRPYFRLFINWLPDLGSLEPIVDGANFQILTAFANAFHALHPLKIPAFS
YAWLELVSHRSFMPKMLTGNSQKGWPYIQRLLVDMFQFMEPFLRNAELGPPVHFLYKGTLRVLL
VLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLAEINQSPRI
LSEVDGALKLKQMKADVDEYLKTRQQGSSFLADLKQKLLLPPSEAASAGTRYNVPLINSLVLYV
GMQAIQQLQARSPHAQSSANTVTLAVFLVGAALDIFQTLIVELDTEGRYLFLNAVANQLRYPNT
HTHYFSFVLLYLFAESTQEIIQEQITRVLLERLIVNRPHPWGLLITFIELIK
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						responsive to salt stress in root
					

			
		

Functional Information
Coding potential	Y
Potential coding position	6414458-6409574(-)
Potential amino acid sequence	MAKLIDGGRNKAATEFAISLLQTLVVDESSVISELHNLVDALAKVAAKPGSSEPLQHLVEIIKN PATSVAAISGVNVGKDDKARLARDKKAPVPSITNREDSSILESEDPAGFRDQVSILFAEWYRIC ELPGANEAAFNHFILQLHQNGLLKGDDMTDRFFRLLTEISVAHCLSSEVINSGALQSPQQIQNL SFLAIDIYAKLVFSILKGSGKTALLSRILAVTVRFIQKDAEEKKGSFNPRPYFRLFINWLPDLG SLEPIVDGANFQILTAFANAFHALHPLKIPAFSYAWLELVSHRSFMPKMLTGNSQKGWPYIQRL LVDMFQFMEPFLRNAELGPPVHFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNI ILSAFPRNMRLPDPSTPNLKIDLLAEINQSPRILSEVDGALKLKQMKADVDEYLKTRQQGSSFL ADLKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIQQLQARSPHAQSSANTVTLAVFLVGA ALDIFQTLIVELDTEGRYLFLNAVANQLRYPNTHTHYFSFVLLYLFAESTQEIIQEQITRVLLE RLIVNRPHPWGLLITFIELIKVIYSEEERKYNKDITLGLIRSELLNLAEYNVHMAKLIDGGRNK AATEFAISLLQTLVVDESSVISELHNLVDALAKVAAKPGSSEPLQHLVEIIKNPATSVAAISGV NVGKDDKARLARDKKAPVPSITNREDSSILESEDPAGFRDQVSILFAEWYRICELPGANEAAFN HFILQLHQNGLLKGDDMTDRFFRLLTEISVAHCLSSEVINSGALQSPQQIQNLSFLAIDIYAKL VFSILKGSGKTALLSRILAVTVRFIQKDAEEKKGSFNPRPYFRLFINWLPDLGSLEPIVDGANF QILTAFANAFHALHPLKIPAFSYAWLELVSHRSFMPKMLTGNSQKGWPYIQRLLVDMFQFMEPF LRNAELGPPVHFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRL PDPSTPNLKIDLLAEINQSPRILSEVDGALKLKQMKADVDEYLKTRQQGSSFLADLKQKLLLPP SEAASAGTRYNVPLINSLVLYVGMQAIQQLQARSPHAQSSANTVTLAVFLVGAALDIFQTLIVE LDTEGRYLFLNAVANQLRYPNTHTHYFSFVLLYLFAESTQEIIQEQITRVLLERLIVNRPHPWG LLITFIELIKVIYSEEERKYNKDITLGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQ TLVVDESSVISELHNLVDALAKVAAKPGSSEPLQHLVEIIKNPATSVAAISGVNVGKDDKARLA RDKKAPVPSITNREDSSILESEDPAGFRDQVSILFAEWYRICELPGANEAAFNHFILQLHQNGL LKGDDMTDRFFRLLTEISVAHCLSSEVINSGALQSPQQIQNLSFLAIDIYAKLVFSILKGSGKT ALLSRILAVTVRFIQKDAEEKKGSFNPRPYFRLFINWLPDLGSLEPIVDGANFQILTAFANAFH ALHPLKIPAFSYAWLELVSHRSFMPKMLTGNSQKGWPYIQRLLVDMFQFMEPFLRNAELGPPVH FLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKID LLAEINQSPRILSEVDGALKLKQMKADVDEYLKTRQQGSSFLADLKQKLLLPPSEAASAGTRYN VPLINSLVLYVGMQAIQQLQARSPHAQSSANTVTLAVFLVGAALDIFQTLIVELDTEGRYLFLN AVANQLRYPNTHTHYFSFVLLYLFAESTQEIIQEQITRVLLERLIVNRPHPWGLLITFIELIKV IYSEEERKYNKDITLGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVVDESSVIS ELHNLVDALAKVAAKPGSSEPLQHLVEIIKNPATSVAAISGVNVGKDDKARLARDKKAPVPSIT NREDSSILESEDPAGFRDQVSILFAEWYRICELPGANEAAFNHFILQLHQNGLLKGDDMTDRFF RLLTEISVAHCLSSEVINSGALQSPQQIQNLSFLAIDIYAKLVFSILKGSGKTALLSRILAVTV RFIQKDAEEKKGSFNPRPYFRLFINWLPDLGSLEPIVDGANFQILTAFANAFHALHPLKIPAFS YAWLELVSHRSFMPKMLTGNSQKGWPYIQRLLVDMFQFMEPFLRNAELGPPVHFLYKGTLRVLL VLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLAEINQSPRI LSEVDGALKLKQMKADVDEYLKTRQQGSSFLADLKQKLLLPPSEAASAGTRYNVPLINSLVLYV GMQAIQQLQARSPHAQSSANTVTLAVFLVGAALDIFQTLIVELDTEGRYLFLNAVANQLRYPNT HTHYFSFVLLYLFAESTQEIIQEQITRVLLERLIVNRPHPWGLLITFIELIK
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	responsive to salt stress in root

			
						 Other Information
					
						References
						Zhu et al., 2019

circRNA

Detail information of Csa3G117930_circ_g.1

Address

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