Detail information of BGIOSGA004755_circ_g.3


General Information
CircRNA Name BGIOSGA004755_circ_g.3
ID in PlantcircBase osi_circ_010906
Alias Chr01:37159111_37159820(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 39281752-39282461  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA004755
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA004755_circ_g.1 BGIOSGA004755_circ_g.2 BGIOSGA004755_circ_g.4 BGIOSGA004755_circ_g.5 BGIOSGA004755_circ_g.6 BGIOSGA004755_circ_g.7 BGIOSGA004755_circ_igg.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   GT-AA
Number of exons covered BGIOSGA004755-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGTGTTTCAAAATCAGCATGTCAACCAGGCAGCAGGTCCCCCAGGGTATCAAAACCAGTATGT
CAACCAGGCTCCAGGCACCCCAGGATTCCAAAACCAgttcaggtgctgcttatcagcctcttac
ttcatttcagaattcaggatcttatgtcggtcctacaagtaacacatattataatgctggtgct
catcagac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTCAGGTGCTGCTTATCAGCCTCTTACTTCATTTCAGAATTCAGGATCTTATGTCGGTCCTAC
AAGTAACACATATTATAATGCTGGTGCTCATCAGACTGCACCGGGATATGCTACCAGCAACAAT
TATTATCAAAGCAATTCCTGGACTGGCGGAAGTTCTGGAGATAATCATGTACAATCATATCAGA
GCTATACTCCATCAGATACTAATGCAGCCCAGAGTTCTAGTTCACTACCCAACAATTCTTACCA
TTATCATCAGCAGTATAATCAATGGCCTTATTATTATGATCAGTCCGCACCAAGTTCTGGTGGT
CCTGCAGTTGCTGTCAGCAGTGTTTCTGATGCAAACACTGCCAGCGTCAGTTCTGGTTATGTTT
ATCCGAGCACCCAACCACCTCCACCAGGCACTACATGGAGAAGTGATGCTGGTGCAACTGCTGT
CCCTCCCCCGCAGGTATTATTTCTTCATTAGTACTTGGGAACCTGTGACTCTGAGCACTTCCTA
TGTCCTATTCATTGTATATTTTTTTATTCAGGTTTTTCCCACAAGTAGTTTTGCGTTGCCAAAT
TTAACAGTTAGAAATTGACAGGCACCAGGAACCCCAGTGTTTCAAAATCAGCATGTCAACCAGG
CAGCAGGTCCCCCAGGGTATCAAAACCAGTATGTCAACCAGGCTCCAGGCACCCCAGGATTCCA
AAACCA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021