Detail information of BGIOSGA023582_circ_ag.1


General Information
CircRNA Name BGIOSGA023582_circ_ag.1
ID in PlantcircBase osi_circ_016612
Alias Chr06:30561111_30564094(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr6: 31784934-31787917  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA023583_circ_igg.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGATTTGATCTCATGTTTATGCAGGCCTCCTGTCCATGGCCAATGCTGGGAGAGACACAAACGG
GTCCCAGTTTTTCATCACCACTGTAACCACCAGCTGggttggatgggaagcatgttgtgtttgg
caaggtgctttctggaatggacgtcgtctacaagattgaagctgaaggcagtcagagtggtact
ccacggtc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTTGGATGGGAAGCATGTTGTGTTTGGCAAGGTGCTTTCTGGAATGGACGTCGTCTACAAGAT
TGAAGCTGAAGGCAGTCAGAGTGGTACTCCACGGTCCAAAGTCCTCATATCAGACAGCGGCGAA
CTGAAGTGATCTTCCATTAACAGAAGCTTAATAACGAGCTGTACTTACTTACCGTGAATTCCTA
TCATTGGAGTATGTGTGCACGTAATTAGTGCCATGCATTGTTTGGAGCCTGTTTCTGCTGATTA
TAATGTGACCTGCTTTGTGTAATTGTTGTAAAATGAGAGTGTTCTCTCAATATTTTCCCATGGC
AATTCAGATTGGATATGCAATGCAAGCTTATATACATGCGAACACAATGTCATATTCCTCTTTG
ATTTAGATTATTGAGTGGATTATTCCATGAATTATCAATTTGATTATGACTATAAATTAAATAA
TTTATAAAAATTAACTTAATAAATAGTTTAAAACACGCATTTTTAAGCCTTGTACAAGAAAATT
CTTTTTATAAAAAAAATTTAAAGCGTTGAGCAAATAATCCGTTTCTATAATTAGAATAAGGTTT
AGTTTGATTGTGAAGTTTGGATTTTTAATGGCACGTAAAATAAGACTAGACTAATTAAGTATTA
ATTATTTAAAACTTATTTGTTTTTTAAATAAACTTCTAAACAAAAAGTATTTGGAAAAAAATAA
ACCTTTAACAGTTTAGAAAGCTAAACTATGCTCACAGTAAATAACACCCAAACTAACTTTCAAA
CTAAGCCTAAGTTGAAAAGAACAACTCGATAGAATCTAAAATTTTGATGCACTCTTGATCGATT
TATCTGCATCACCACTCCCTCATTTACACAAAACAACCCGCAATCGAAAGTTACAAAAAAAAAA
AAAGCACCTCAATGAGTGTGATTAATGTGGAGTTAAACACGAAGATCTTTGCTTGAGACAGAAC
CCGACACTGACATGTAGGGCCCACCTGTCAGGCAGCGCATCGCTTTCACCCTCTTGGCTACTAT
TTCTTCGTGGACTCTTGGGCAGAGTGCGGAGACCGCAGTGTGGAGCAACAGATCTATCCATCCA
TCCCATCCTCGATCCTTCATTCCTGCCCGGCGGCGAGCGAGAGAGAGGCGGAGGAGATCCGAGA
TGGCGGGGAGCGGGTGGAGGAGGATCCCGGCGGCGAGGAGGCCGCCCATGTCGCGCCCGGCCTC
GGTCTGCCTCTGGATCGTGCTCGTCGCCGCCACCCTGGCGCTCGCCCAGGTGCTCATCCACCTC
GTCCGTCTCCACTCTCCACCACGCCTCGCTCCTCCTCCTGCTTCCCCGTATCTGCGTGTGATGT
GATGCGTGTGCTCTCCGATCTGATTCGATTGTTTGTGCTCGTGCGCTGATTTCTTGATCTGTTT
GATCTGTGGATCCAATTGGCCCTGGTGTGCTGATTTGTTAGAATTTTGAGTGGTGCCTCTATGT
GCATCTATGCGTACTCACCTTTTTTTTTGTTGCTGTTTAGGCGAAGAAATCGAAGGCGGATTTG
ACTGAGGTCACCCACAAGGTCTACTTCGACGTCGAGATTGATGGCAAGCCCGCAGGTTTGTGTT
GGCCCCCTATGTTTAGCTCTACTACCATATCAGCATAATATATAAATCTTCAGGCAGAAAGAAG
AAAAGATATGCATAGTTTGATGTGTCTAGCATTAGCAAATACGGAGCAGTAACAATTTAATTTG
CATTAATTGTGTCCCACCGTTGTGTATAAGTGACTTGTGATGGGCTGATGTCATATGCAGTGAT
TATTACAGTTAGAGTTATCAGCATTTGAGATTGACCTGAAGCTAACTCTATTATGATGAGAATT
TAGCTTCTTCTATTGTTGTTTATGTTTAAGGAGAAATGTTGATGTGATATTTGTGTATGTACTA
TTTATAATGTCTTTCCTGTTAATGATTGCCTTACTGACATTTATTATTTTTTCTTGTATTGCCA
TAGGACGGGTTGTCATGGGACTTTTCGGGAAGACTGTTCCTAAAACGGCAGGTACCATTTGCTT
ATCATTTAGTTAGGTAACAGGAAATTCATTGTCATATCACAAATGCTAATGATTCACTATATCT
TTTTTTTTCCTACAGAGAACTTCCGAGCACTTTGCACAGGTATGCTCCCCGATGATTTATACTG
TTTTTATTACATTAGATGTGTTCATTCATCTTCTGCTAGAGTTTCCAGATGGTTAATCCCATGG
CAAGCTTGGTAGTGGCAGCATGTAGAATTTCCAGCATTGAATAACACTTTCTTTGCCACTTTAA
CCTGAAATTATTTTTGAATGCACAACTTTTGTGTCATTATCAAGTTTGGCCAATCAAATATACT
GTTACAGTTGACTAGTTAAAAATTGATGCAAAAATACATCAGCTCAGCTGTTGTCATTATTCAT
ACGCAAGTGTAGAATATTATGAAAACCCATAAAAGTATTTACTTCATATAATGAGAGAGATCCC
ATTCTGGACAGCGAATAGCACTACAATCTGTGTGGTAGCATTCCCTGATGCCTACTTGTGGTTA
TTATACGTAATCTAAGTTTGGGTTTGATGTAGCGCTTTCAACTTTGTTGTTATACAGGAGAGAA
AGGAACTGGAAAGAGTGGCAAAGCACTCCACTTCAAGGGAAGTGCATTCCACAGAATTATACCC
AGCTTTATGATCCAAGGAGGTGACTTCACACTTGGTGATGGAAGGGGTGGTGAATCTATCTATG
GGACGAAGTTCGCCGATGAAAACTTCAAGATCAAGCACACCGGACCAGGTAATTTTTGTTATTT
CCTGAACCATTTTTTTACTACACTATAGACGCATTATTTGTGTGGTAGACCATCAAATCATCCT
TGTTTGATTTGATCTCATGTTTATGCAGGCCTCCTGTCCATGGCCAATGCTGGGAGAGACACAA
ACGGGTCCCAGTTTTTCATCACCACTGTAACCACCAGCTG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021