Detail information of Zm00001d005573_circ_g.2


General Information
CircRNA Name Zm00001d005573_circ_g.2
ID in PlantcircBase zma_circ_007313
Alias Zm02circ00086, GRMZM2G138178_C1
Organism Zea mays
Position chr2: 178921404-178922432  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRI2
Parent gene Zm00001d005573
Parent gene annotation Mediator of RNA polymerase II transcription subunit 25
Parent gene strand -
Alternative splicing Zm00001d005573_circ_g.1
Support reads NA
Tissues leaf, endosperm
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d005573_T034:4
Zm00001d005573_T023:3
Zm00001d005573_T018:4
Zm00001d005573_T006:3
Zm00001d005573_T001:4
Zm00001d005573_T008:4
Zm00001d005573_T016:4
Zm00001d005573_T003:4
Zm00001d005573_T030:2
Zm00001d005573_T013:3
Zm00001d005573_T017:4
Zm00001d005573_T005:4
Zm00001d005573_T027:4
Zm00001d005573_T020:4
Zm00001d005573_T026:4
Zm00001d005573_T025:4
Zm00001d005573_T031:4
Zm00001d005573_T011:4
Zm00001d005573_T010:4
Zm00001d005573_T032:4
Zm00001d005573_T014:4
Zm00001d005573_T002:3
Zm00001d005573_T028:4
Zm00001d005573_T004:3
Zm00001d005573_T022:4
Zm00001d005573_T029:4
Zm00001d005573_T033:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATACTATATTTTTTTGGAGACCAATAATGCAAAACAAAGACTTACTTCGAGTTTACAAATTAT
TACAGGCTGTCCTTGCCTTTGGCCAGATAAAGTTCCcagcttcttctcttgtagttgtacaaga
aacccatggtgatttaaagtccgaaaaactagaaagtctgccttgccaacatattgtctgcaga
ataaccaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGCTTCTTCTCTTGTAGTTGTACAAGAAACCCATGGTGATTTAAAGTCCGAAAAACTAGAAAG
TCTGCCTTGCCAACATATTGTCTGCAGAATAACCAAGTAAATATGTCATTCACAGCACATTTAC
AAGAAAATGATGCAACAAGTTGGCATTGAAAAGAATGAGTAACAAACTTGTTGTTCATATGCTC
CTGGGCTATGAGGCGAACAATCTGCATTGTTTCTGGCCAGTCCGCTGCAAGTCTGCATGCAGAA
AGTACGGCTTTCAGTTTCCTACTAAGTCTAGATGCATAATTCGAAAGTACCACAAAAAGGTTCC
ATTGTTAAACATACCCAATGAAAATTTCTAGTATCATTTCTTTCAAGACAAGGACAACGACAAC
ATAACATCAACTAACAAGAAATACTTACCTCAATCATAGTAATCAACAGAAAACACTGTATAAC
AGAGATTCAAGAAAATGTAAGGTTTATTGCAAAAAATCAGACACTTACGTTTCAGACGCTGTTC
CACTCCTATAACCCTGTCAGACATTGTTAAAGTGAGAAATGTCAAAACAAAAAAGCGAAAGAGC
TGCACAAGTAAGACTCCAGCTTTGAAGGTGATAACAAACTATGGCTCAAAATGGGCATCCGCAG
CAATTGATACAGTCCATTTCTAAAGGGGTTAAATTCTCTCTACCTGAAGTTTAAAAAAACACGA
TTACAACTTCAGAAGTTTATTCAAAACTAGTTTATTTCCAGTCTTAGCAAAAAGATGGGTCAAA
GATATCACAAAACTTAGTTGAACGAGCATAGAAGTGTTGTTCATACAGATCTACAAAGAGCATA
GAAGTGTCATCATATCTCAGGAACTCAGGAACCATTATTTCTGCTAAGTAATGCTGCAGAACAA
AAAACTACTAGAAACTTTTATAATTTCTTACAATATACTATATTTTTTTGGAGACCAATAATGC
AAAACAAAGACTTACTTCGAGTTTACAAATTATTACAGGCTGTCCTTGCCTTTGGCCAGATAAA
GTTCC
Conservation Information
Conserved circRNAs NA
PMCS 0.049488727
Functional Information
Coding potential Y
Potential coding position 178922287-178921603(+)
178921440-178922398(-)
178921624-178922262(-)
Potential amino acid sequence MLLLRVYKLLQAVLAFGQIKFPASSLVVVQETHGDLKSEKLESLPCQHIVCCSYAPGL*(+)
MGFLYNYKRRSWELYLAKGKDSL*(-)
MQIVRLIAQEHMNNKQYVGKADFLVFRTLNHHGFLVQLQEKKLGTLSGQRQGQPVIICKLEVTA
LLSRNNGS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to drought stress
Other Information
References Han et al., 2020;Zhang et al., 2019