Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G19800_circ_g.1 |
ID in PlantcircBase | ath_circ_003453 |
Alias | 1:6846543-6846858 |
Organism | Arabidpsis thaliana |
Position | chr1: 6846543-6846858 JBrowse» |
Reference genome | TAIR10.38 |
Type | ue-circRNA |
Identification method | find_circ; CIRI2 |
Parent gene | AT1G19800 |
Parent gene annotation |
Protein TRIGALACTOSYLDIACYLGLYCEROL 1, chloroplastic |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | 2 |
Tissues | seedling |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G19800.2:2 AT1G19800.6:1 AT1G19800.3:2 AT1G19800.5:1 AT1G19800.4:2 AT1G19800.1:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.117785259 |
Functional Information | |
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Coding potential | NA |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Philips et al., 2020 |