Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d009751_circ_g.1 |
ID in PlantcircBase | zma_circ_009637 |
Alias | Zm08circ00040, zma_circ_0002726, GRMZM2G018142_C1 |
Organism | Zea mays |
Position | chr8: 79664630-79665563 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | CIRI2, find_circ |
Parent gene | Zm00001d009751 |
Parent gene annotation |
Chromatin modification-related protein EAF1 B |
Parent gene strand | - |
Alternative splicing | Zm00001d009751_circ_igg.1 Zm00001d009751_circ_igg.2 |
Support reads | NA |
Tissues | leaf, endosperm, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d009751_T001:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.172981784 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
79665523-79664872(+) 79665433-79664632(-) |
Potential amino acid sequence |
MAHLSCSHTFPKSFLVIHEKRFQRVPVCQHCTRCCYCIKETFF*(+) MSFWRSAEALQTADRTAKVMPHNSTMLEEIDPSGVKAGKEQGHNSLEAKESSQQRSQIHDYAVR FLEYNRTADLHVLPEAPPTPDRLNDFGVLKVSDHLSEESLFYTVAAPGAVLAYRDSLESLFMYH KERLWKSVAAAQVCHWIASDAHAKFEKASILKKQKAVIKIIAKGIMSFWRSAEALQTADRTAKV MPHNSTMLEEIDPSGVKAGKEQGHNSLEAKESSQQRSQIHDYAVRFLEYNRTADLHVLPEAPPT PDRLNDFGVLKVSDHLSEESLFYTVAAPGAVLAYRDSLESLFMYHKERLWKSVAAAQVCHWIAS DAHAKFEKASILKKQKAVIKIIAKGIMSFWRSAEALQTADRTAKVMPHNSTMLEEIDPSGVKAG KEQGHNSLEAKESSQQRSQIHDYAVRFLEYNRTADLHVLPEAPPTPDRLNDFGVLKVSDHLSEE SLFYTVAAPGAVLAYRDSLESLFMYHKERLWKSVAAAQVCHWIASDAHAKFEKASILKKQKAVI KIIAKGIMSFWRSAEALQTADRTAKVMPHNSTMLEEIDPSGVKAGKEQGHNSLEAKESSQQRSQ IHDYAVRFLEYNRTADLHVLPEAPPTPDRLNDFGVLKVSDHLSEESLFYTVAAPGAVLAYRDSL ESLFMYHK(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Han et al., 2020; Ma et al., 2021b;Zhang et al., 2019 |