Plant Circular RNA Database

Detail information of Os07g0461600_circ_g.5

			
						 General Information
					
						CircRNA Name
						Os07g0461600_circ_g.5
					
						ID in PlantcircBase
						osa_circ_033693
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr7: 16200187-16204165  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os07g0461600						
					
						Parent gene annotation
						
							Hypothetical conserved gene. (Os07t0461600-01);Similar to TA7 pr
otein (Fragment). (Os07t0461600-02);Similar to TA7 protein (Frag
ment). (Os07t0461600-03)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os07g0461600_circ_g.3 Os07g0461600_circ_g.4 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os07t0461600-01:5
Os07t0461600-02:5

General Information
CircRNA Name	Os07g0461600_circ_g.5
ID in PlantcircBase	osa_circ_033693
Alias	NA
Organism	Oryza sativa
Position	chr7: 16200187-16204165 JBrowse»
Reference genome	IRGSP-1.0.38
Type	u-circRNA
Identification method	CIRCexplorer
Parent gene	Os07g0461600
Parent gene annotation	Hypothetical conserved gene. (Os07t0461600-01);Similar to TA7 pr otein (Fragment). (Os07t0461600-02);Similar to TA7 protein (Frag ment). (Os07t0461600-03)
Parent gene strand	-
Alternative splicing	Os07g0461600_circ_g.3 Os07g0461600_circ_g.4
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os07t0461600-01:5 Os07t0461600-02:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TGATCATAAAATGGAGGTTGTAAATCTTTTTACCAATATATGACTCTAATATTGCCTCTACACT
AATGTATGTCCCATGTCAATGAAAAACAGGCTGCACctcaatatatgacataaacttcgaaaca
tcactactctgtgcaaccttcaagggcatttcactactggtaacttttggtcgcgtatctcctt
gcttgtgt

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTCAATATATGACATAAACTTCGAAACATCACTACTCTGTGCAACCTTCAAGGGCATTTCACTA
CTGGTAACTTTTGGTCGCGTATCTCCTTGCTTGTGTTTAGCAAGGTTATTATCCCTGCACACAC
ATAACGGATAGAGGTTTTAGCAATTCAGAAGTCCTTTGTTGAAATTAGATAGCATCTCTCTACT
TAAATATTTAATCAGATTATGTCTTTTTTTTCCTTAAAAAAGTCAATTGGTAAAAGAAACATTG
ATGACTGTTTATACAATTAGAAAACTAAGCTATTTTAATGCACAACAACGGCAGTAATTGAATA
TGTCGATATGATTAGCCAGAAAACTAAGGCACTTGGCAATTTTAAAGCACTGAAATGTTAGAAC
TACACATTGATCGTGTTACTTGGAACACCACTCAAATGTGAAAAAGGATAGTCCAACGGCAATA
TAATGTATGATTTGAAGAACAGAAGGATGAATAGATGATAATTTTGCAAGTGGAATTTAAAAGG
AAATGAGAAACAGTAATTTATCAAGATACAGAATATAGAAGATCAAAAAATTTAAGAAGCATAA
CCTGAACATTATTTCTGGATCATCAGAACTTAGCCATCTCTTCTTCCATTTCTTCAAGGACTCA
ACCATGCTGCACAATTATCTTAGCATAAATATCATAGCCAAAATGGTACATTTATAACAGAATT
GGATGGTTTGGTATACTTGGAATGGTAGTTATTCAGGTTAACACGATATGCCTTCTCGTCAGCT
CTAATTTGCTTCTCCTTATTAAGTAAGGCATCTGGGTGAGTATCACCATAGCAAAGAGAGGAGG
ACCTGTAATTTAATAATAATTCAATCAGCAATCAACATCTTGCAGAAATTGAGAAGTATAGAAG
TCTAGTGAACAATTTTAAAAGACAAAAGAAGTGCAGTGCAATATCATTTGTGAACAACTGAACA
AACAGGCAGGCGTTGTCCTGGAGCAGGGCTGTCAGGGCGACTGTCCTGGGCCCCGGACCCAAGC
CCACATGTGCACCACGAGTTAGTTATGTATCGGTAGCCAGGAGACTAGTAGAGGCCCGTGCAAG
CCAATAATTGCTCTCATTCCGCTTCTGCCGCAAGTTACGAAAAGTTGACAACGCCTTGTTCCCT
ATTTTTCCAAAATGTACACTGATGCAGCTCCTAATCTCCTGTTTGGTTGCTTTCTTTCACATAA
TTGATTTGAAGAATTTCAACCCGGCCCATATCTAGTTTTGCAAGATCAACTCCAAAAAATTGGA
TCTTTGCTTCATAGTCAAAATAAAACATCGAGGTAAGACAAGATTATTAGATCCAAACATTGTT
GCTAAATCGTAAAGCCGAGTCGAGATACCATCTACCGAATAGGAGACTAGTATTGACTAGTCAT
TGAGTTGACTATTCTATCATGGTGTTACTACATATATCGATTACTTCTACTGCTAGGATGTTAT
TACTTGCTGTGCCTAATGGACCCAGTGGAGCTCTCCTCTCATCTCCCTTTCACTCAATAGGGCC
TGATAGGCCAGGTCTCCCAAACAACTCACTGTTGCAGCCTTCACTGCACTCCTTTGCGTCTTCT
GTTGCCAGCAAGTCAAGTCGTGCCGCTGAAGTGGTGCTCCATGAAAGACTTTAGGATTGGTCAT
AGGTAGGACATGAAAACAGTGAATCCAGAATATTCTTGTTATTTTGATTTCCTTGGTATTGCTT
TATTTCTATAATACATTTGCACTAATTTTTAATGGTAATGTGTCCTTTTCTCATTTCAGCACTC
CTCTCAGAGCGCTTGAGGACTTTGTCTTATACGTATTTTTCTTTGTTCTATTTCAGTTTATACA
TGATCAAAATTTAGGTGCTTTTGTTCCTTATTCCTACCAAATCTTGTATTATTGTATGGTATAA
ATTACTGTATTTAGCTGATGCGATATTCTCTCATGCTCCAGAGTGTATATCCTAGTAGTGTGTA
ATATTTTTTGAACATTACATTTGTTACTATAATAAAATTACTGTTAGCACCTGCATCATAAACA
GGACTTCATGATCCTTGGACAATCATGGTAGTAAACATCTGCTGGAGGGAGGTCGCTTGGTGAC
AACTTCAACTAGAATGGACGGTGATGTGAGGCAGGGATTCTAGATTAATCTGTAATAGAACTGG
GGAAGACCAGGGCTCTGTTTAGGGACTTGTTTATTCGTCTTTGTTTGACAGAAAGAGATGCCAG
CCCCATTTATAGATGAGTTGACCCACGGGATGCTTATCTCTAAAACTAAGGAAATAGATAACAA
CTCAATAATATCTCTAAAATAACAACTGAATACTGCTGATACAGTATCAAATGGGAAAATAGTG
ATTGTTCACATGCATGAACGGTCTATCGATTGTAATTCATGTACGTGACAGACAATGTGTGCAA
CCACATGCCTAATAGGAATTATGCATGAAATAGGATAAAAATGAACTCTAATGTCAGCAACTAG
CCCACTATATCACTTTTAATGGTGTGGATCAACATGTATTGCCTACAAAATATGATGAGTGTAA
AGGGAACATTCTGGGGTATCAGTGGCTTTTGGTGTTAGTATGAGCCTTCCAGAATGAGTCATAG
TCCCTCAATTTGGTAGCTCTTGAAATCCAATTTAAAGGTTTTGTTTGATATGCAAAAGTACATT
TTGACATTATGTTAGCTTATGCATTATTCTATTAATCATATATTCATATTGGAGCTAGTAATTG
TTCGGCGTACATAAATACCAGGTAGAATATTTTAGAAAGCTGATCACATTTACGTAACACTTAG
AAAGAGAGTTGGCATGTGAGCTGGAGCAACACATCCCAAGCCCCAGCTTTAGCAGGACAAACAA
TTATATGTTCAACAAAAACACAAAATGAATAAGGGACAAACTGCATGACTTCTATGATGGATGT
AAAACATACCTAACTTGTTCCCATGAGAATATGCCAAACAAAATAAAATAAAATATTCAAATGG
AGAATCACGCCACATCTATGCAAGGCAAAAAGGAGTTCTACGAGGAAAAGCATATATCCACCTG
TTTCAAACCTTATTGATATTTTTTGAACATACACTAGAATGAAGATGAAACAAGTAGGCCCCTA
CAGAGGCAATTTCTAAAATTGTACTAGAACGCAATAAAAAATGCAGCTAAAATGTCTAGAAGTG
CAAATGGAAGTGATCACAGAAATCACATCATAGAGAACTTGCCAGCTGAGGGAAGGATTTCCAA
AGTGATAATTTTGGCCTTTAAGCAATAAATGAACATTTTCTTCTGCATCAATCTCAGTTGGAAG
AAACTGTATGAGAAACTTTCTGTCAGCTTCTGTCAGACATGTATCCCAAACCTATAATCAATTC
ACAATTGTCAATATTAATATGTAATAAGAGTATACCCCTGTAATGGGGCATCAAGATATCAAGA
TCATTATTCTAAAGCAATTAAAGCTTTAGCACGAAAAGGCAGGCATTGTGAAAAATAGATGGCA
AAAGAACAAAGCTTACATACAAAGGATAAACTAATCACACCTTATAGGACAGCACACTTCTCAA
GTTCTCCAAGGAAAATGTCTCTGGAGGAATATATGTAACATCAGCCAGCCCTGAATCATGCTTC
TGTCTGGAATCTATGAATGGTGCCAAGTCTGACCACAAAATCCCAACTTGTTCCTTTTGGGGAA
CCACTCTCTTTTGATAGTCATCCCATTTAAGAGCAATTTGAGACTTCAAACTTATATGGCAATT
AGAAGACTCAACTTTTGACTTCTTCCATGTCCTGTTTTGATCTGAGTTAGTAGACCTTATTATA
CGTTTCTTTTGCTTGCCTGCTGCCATTCTGCAGGTCATCTGATCATAAAATGGAGGTTGTAAAT
CTTTTTACCAATATATGACTCTAATATTGCCTCTACACTAATGTATGTCCCATGTCAATGAAAA
ACAGGCTGCAC
						
					

			
		

Sequences
Splice junction sequence	TGATCATAAAATGGAGGTTGTAAATCTTTTTACCAATATATGACTCTAATATTGCCTCTACACT AATGTATGTCCCATGTCAATGAAAAACAGGCTGCACctcaatatatgacataaacttcgaaaca tcactactctgtgcaaccttcaagggcatttcactactggtaacttttggtcgcgtatctcctt gcttgtgt
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTCAATATATGACATAAACTTCGAAACATCACTACTCTGTGCAACCTTCAAGGGCATTTCACTA CTGGTAACTTTTGGTCGCGTATCTCCTTGCTTGTGTTTAGCAAGGTTATTATCCCTGCACACAC ATAACGGATAGAGGTTTTAGCAATTCAGAAGTCCTTTGTTGAAATTAGATAGCATCTCTCTACT TAAATATTTAATCAGATTATGTCTTTTTTTTCCTTAAAAAAGTCAATTGGTAAAAGAAACATTG ATGACTGTTTATACAATTAGAAAACTAAGCTATTTTAATGCACAACAACGGCAGTAATTGAATA TGTCGATATGATTAGCCAGAAAACTAAGGCACTTGGCAATTTTAAAGCACTGAAATGTTAGAAC TACACATTGATCGTGTTACTTGGAACACCACTCAAATGTGAAAAAGGATAGTCCAACGGCAATA TAATGTATGATTTGAAGAACAGAAGGATGAATAGATGATAATTTTGCAAGTGGAATTTAAAAGG AAATGAGAAACAGTAATTTATCAAGATACAGAATATAGAAGATCAAAAAATTTAAGAAGCATAA CCTGAACATTATTTCTGGATCATCAGAACTTAGCCATCTCTTCTTCCATTTCTTCAAGGACTCA ACCATGCTGCACAATTATCTTAGCATAAATATCATAGCCAAAATGGTACATTTATAACAGAATT GGATGGTTTGGTATACTTGGAATGGTAGTTATTCAGGTTAACACGATATGCCTTCTCGTCAGCT CTAATTTGCTTCTCCTTATTAAGTAAGGCATCTGGGTGAGTATCACCATAGCAAAGAGAGGAGG ACCTGTAATTTAATAATAATTCAATCAGCAATCAACATCTTGCAGAAATTGAGAAGTATAGAAG TCTAGTGAACAATTTTAAAAGACAAAAGAAGTGCAGTGCAATATCATTTGTGAACAACTGAACA AACAGGCAGGCGTTGTCCTGGAGCAGGGCTGTCAGGGCGACTGTCCTGGGCCCCGGACCCAAGC CCACATGTGCACCACGAGTTAGTTATGTATCGGTAGCCAGGAGACTAGTAGAGGCCCGTGCAAG CCAATAATTGCTCTCATTCCGCTTCTGCCGCAAGTTACGAAAAGTTGACAACGCCTTGTTCCCT ATTTTTCCAAAATGTACACTGATGCAGCTCCTAATCTCCTGTTTGGTTGCTTTCTTTCACATAA TTGATTTGAAGAATTTCAACCCGGCCCATATCTAGTTTTGCAAGATCAACTCCAAAAAATTGGA TCTTTGCTTCATAGTCAAAATAAAACATCGAGGTAAGACAAGATTATTAGATCCAAACATTGTT GCTAAATCGTAAAGCCGAGTCGAGATACCATCTACCGAATAGGAGACTAGTATTGACTAGTCAT TGAGTTGACTATTCTATCATGGTGTTACTACATATATCGATTACTTCTACTGCTAGGATGTTAT TACTTGCTGTGCCTAATGGACCCAGTGGAGCTCTCCTCTCATCTCCCTTTCACTCAATAGGGCC TGATAGGCCAGGTCTCCCAAACAACTCACTGTTGCAGCCTTCACTGCACTCCTTTGCGTCTTCT GTTGCCAGCAAGTCAAGTCGTGCCGCTGAAGTGGTGCTCCATGAAAGACTTTAGGATTGGTCAT AGGTAGGACATGAAAACAGTGAATCCAGAATATTCTTGTTATTTTGATTTCCTTGGTATTGCTT TATTTCTATAATACATTTGCACTAATTTTTAATGGTAATGTGTCCTTTTCTCATTTCAGCACTC CTCTCAGAGCGCTTGAGGACTTTGTCTTATACGTATTTTTCTTTGTTCTATTTCAGTTTATACA TGATCAAAATTTAGGTGCTTTTGTTCCTTATTCCTACCAAATCTTGTATTATTGTATGGTATAA ATTACTGTATTTAGCTGATGCGATATTCTCTCATGCTCCAGAGTGTATATCCTAGTAGTGTGTA ATATTTTTTGAACATTACATTTGTTACTATAATAAAATTACTGTTAGCACCTGCATCATAAACA GGACTTCATGATCCTTGGACAATCATGGTAGTAAACATCTGCTGGAGGGAGGTCGCTTGGTGAC AACTTCAACTAGAATGGACGGTGATGTGAGGCAGGGATTCTAGATTAATCTGTAATAGAACTGG GGAAGACCAGGGCTCTGTTTAGGGACTTGTTTATTCGTCTTTGTTTGACAGAAAGAGATGCCAG CCCCATTTATAGATGAGTTGACCCACGGGATGCTTATCTCTAAAACTAAGGAAATAGATAACAA CTCAATAATATCTCTAAAATAACAACTGAATACTGCTGATACAGTATCAAATGGGAAAATAGTG ATTGTTCACATGCATGAACGGTCTATCGATTGTAATTCATGTACGTGACAGACAATGTGTGCAA CCACATGCCTAATAGGAATTATGCATGAAATAGGATAAAAATGAACTCTAATGTCAGCAACTAG CCCACTATATCACTTTTAATGGTGTGGATCAACATGTATTGCCTACAAAATATGATGAGTGTAA AGGGAACATTCTGGGGTATCAGTGGCTTTTGGTGTTAGTATGAGCCTTCCAGAATGAGTCATAG TCCCTCAATTTGGTAGCTCTTGAAATCCAATTTAAAGGTTTTGTTTGATATGCAAAAGTACATT TTGACATTATGTTAGCTTATGCATTATTCTATTAATCATATATTCATATTGGAGCTAGTAATTG TTCGGCGTACATAAATACCAGGTAGAATATTTTAGAAAGCTGATCACATTTACGTAACACTTAG AAAGAGAGTTGGCATGTGAGCTGGAGCAACACATCCCAAGCCCCAGCTTTAGCAGGACAAACAA TTATATGTTCAACAAAAACACAAAATGAATAAGGGACAAACTGCATGACTTCTATGATGGATGT AAAACATACCTAACTTGTTCCCATGAGAATATGCCAAACAAAATAAAATAAAATATTCAAATGG AGAATCACGCCACATCTATGCAAGGCAAAAAGGAGTTCTACGAGGAAAAGCATATATCCACCTG TTTCAAACCTTATTGATATTTTTTGAACATACACTAGAATGAAGATGAAACAAGTAGGCCCCTA CAGAGGCAATTTCTAAAATTGTACTAGAACGCAATAAAAAATGCAGCTAAAATGTCTAGAAGTG CAAATGGAAGTGATCACAGAAATCACATCATAGAGAACTTGCCAGCTGAGGGAAGGATTTCCAA AGTGATAATTTTGGCCTTTAAGCAATAAATGAACATTTTCTTCTGCATCAATCTCAGTTGGAAG AAACTGTATGAGAAACTTTCTGTCAGCTTCTGTCAGACATGTATCCCAAACCTATAATCAATTC ACAATTGTCAATATTAATATGTAATAAGAGTATACCCCTGTAATGGGGCATCAAGATATCAAGA TCATTATTCTAAAGCAATTAAAGCTTTAGCACGAAAAGGCAGGCATTGTGAAAAATAGATGGCA AAAGAACAAAGCTTACATACAAAGGATAAACTAATCACACCTTATAGGACAGCACACTTCTCAA GTTCTCCAAGGAAAATGTCTCTGGAGGAATATATGTAACATCAGCCAGCCCTGAATCATGCTTC TGTCTGGAATCTATGAATGGTGCCAAGTCTGACCACAAAATCCCAACTTGTTCCTTTTGGGGAA CCACTCTCTTTTGATAGTCATCCCATTTAAGAGCAATTTGAGACTTCAAACTTATATGGCAATT AGAAGACTCAACTTTTGACTTCTTCCATGTCCTGTTTTGATCTGAGTTAGTAGACCTTATTATA CGTTTCTTTTGCTTGCCTGCTGCCATTCTGCAGGTCATCTGATCATAAAATGGAGGTTGTAAAT CTTTTTACCAATATATGACTCTAATATTGCCTCTACACTAATGTATGTCCCATGTCAATGAAAA ACAGGCTGCAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_017038 						
					
						PMCS
						0.198506021

Conservation Information
Conserved circRNAs	osi_circ_017038
PMCS	0.198506021

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							16200217-16204125(-)
16204066-16204147(-)
						
						Potential amino acid sequence
						
							MFRSLCHILRCSLFFIDMGHTLV*(-)
MTCRMAAGKQKKRIIRSTNSDQNRTWKKSKVESSNCHISLKSQIALKWDDYQKRVVPQKEQVGI
LWSDLAPFIDSRQKHDSGLADVTYIPPETFSLENLRSVLSYKVWDTCLTEADRKFLIQFLPTEI
DAEENVHLLLKGQNYHFGNPSLSWSSSLCYGDTHPDALLNKEKQIRADEKAYRVNLNNYHSNMV
ESLKKWKKRWLSSDDPEIMFRDNNLAKHKQGDTRPKVTSSEMPLKVAQSSDVSKFMSYIEVQPV
FH*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	16200217-16204125(-) 16204066-16204147(-)
Potential amino acid sequence	MFRSLCHILRCSLFFIDMGHTLV(-) MTCRMAAGKQKKRIIRSTNSDQNRTWKKSKVESSNCHISLKSQIALKWDDYQKRVVPQKEQVGI LWSDLAPFIDSRQKHDSGLADVTYIPPETFSLENLRSVLSYKVWDTCLTEADRKFLIQFLPTEI DAEENVHLLLKGQNYHFGNPSLSWSSSLCYGDTHPDALLNKEKQIRADEKAYRVNLNNYHSNMV ESLKKWKKRWLSSDDPEIMFRDNNLAKHKQGDTRPKVTSSEMPLKVAQSSDVSKFMSYIEVQPV FH(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os07g0461600_circ_g.5

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