Plant Circular RNA Database

Detail information of POPTR_0018s08040_circ_g.1

			
						 General Information
					
						CircRNA Name
						POPTR_0018s08040_circ_g.1
					
						ID in PlantcircBase
						pop_circ_004127
					
						Alias
						Chr18:4026368-4030206
					
						Organism
						
							Populus trichocarpa						
					
						Position
						
							chr18: 8818203-8822041  JBrowse»						
					
						Reference genome
						
							Populus trichocarpa genome v3.0 						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							POPTR_0018s08040						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						NA
					
						Tissues
						stem xylem
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						POPTR_0018s08040.1:12

General Information
CircRNA Name	POPTR_0018s08040_circ_g.1
ID in PlantcircBase	pop_circ_004127
Alias	Chr18:4026368-4030206
Organism	Populus trichocarpa
Position	chr18: 8818203-8822041 JBrowse»
Reference genome	Populus trichocarpa genome v3.0
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	POPTR_0018s08040
Parent gene annotation	NA
Parent gene strand	-
Alternative splicing	NA
Support reads	NA
Tissues	stem xylem
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	POPTR_0018s08040.1:12

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GGAAAGACTGGACCCAAGATCACTTTACCACAATCTCTAGCCAACCAACTGCTAGTGCCGATGA
TATCACCTCCCAATATTTAGGATCATCTTCAATGACcaacatgagcaagtcagcagcatgccga
gcagcatctggagttttcctatcacaaacctgctgtagcaatttcttgaaatccctatacctgt
gacacatc

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CAACATGAGCAAGTCAGCAGCATGCCGAGCAGCATCTGGAGTTTTCCTATCACAAACCTGCTGT
AGCAATTTCTTGAAATCCCTATACCTGTGACACATCTAGTTTTAGAACCAAGATTGAAAATGAA
AAGAAAAAAAAGAAACGGAAATGAAGAAGTAAAGGGAGGATTATGATCACTGCTGAGTTAGAGA
AAACTTGTACTTGTGCAGAAACTCAAGACTCCCAGCAGGCTTTGATTTCGAACCCAACAATTCA
ATTAAACCCTCCCATTGCTGTATAGACAAACAATATGAAAAAAAAATTACCAAGGTTATTATTA
TTATTATAGCTCAAGTAATTTAGCATTGGCTGGCTGATCAAATCAATGATTGCAATGACAACCA
CCTTGAAGCTTTCACCAGAGATTGACTTTCCAACAGAATCAAACAACCGCTGGGCAATCTTGTT
AAGGAGAAATTCATCCCGAGCTTGCTGAAGCCAGAAAACTCCCAAACCTTTCCTACCATGCTTC
CAGTGGTACACTCCAGCAATCTATACACAATTATTAAATTTGTTAGTATAAATGCCCAAGTACC
TAAAGTCTTGCAATACTCAGGAGAATCTGGCACTAAAAGACTTCTGCGTGTATGATATAACGTG
TTTACGTTTTACTATAAACAAAAGCTACAGGCAGAGAATTCACTGAGCTCAAAGATACAAGACT
TTTGGTGTATTCATACATAAATAAAGTCGAGGATGTGTTTTAAGATTTCATATACCTTCATAAT
GTTTGAGCTGACATGGTCGAGTTCATACAGACGGCAAATTTCTAAATTCTGCAAGCAGACAGAT
AAATGTCTATCAATCAAAGATTTAAACATCAACTATAAATGCATCCAAAAAATTGACACAGGGA
TGGCACTTCAAGATGAACCAATTACCTTAAGCAACAATTGATTGTGTTGGGCAGGCTGCCTGTA
TAATAAAACCTCCAACAAACTCATTCCTTGCCTCATACACGATGTCAAGTAAACTGGAGCAATC
TGCAGGCAGAAGAGAATTGAATTAAGAAATACTTGACAAAATAGGAACGGGTAAATCACTGCCA
AGGTAATTACACAAAAAGGGGCAGTTAATAAGGACAAAAATAAGATAAAACAGTGCCTAAAAAA
ATGAGCAATAGAACAGATAGAGAATATCAACCTCCACACTTCATATTCAAGAACCTTATACCTT
GAAAATTACACAACCAGGAACTTTAAGGTTGAATCCCAAAGTAAATGGGTTGGCTCTCTCCAAG
AACAGGCAGAATTTATTATTCGTTTTTAACTGAAACTAAATGCAATGAGGTAATAGAAAGTAAA
TTGAAGTTAAACATCTCCTAGCATAAGGATAAATGAAAGGACATTTGAGTTTCTTTTTTATCCA
AACAGGTCAGGTCTACTTTTGCATCAAAATAGATTGTGTTGGAGCTCCTTTATGACAGCCCGTG
CTAGATGTCAAAGTTATATTGTTTAGATACAATTCTGCCTCTTCTACAGGAATTCAAATTTGTG
AATGATTTATTCTTGAGCTCAGTTCCAATTGTGTACTAAATTACTAAATTGCAAATCCTTCTCC
TTAAACCCCACTTTTGTATATATTCAAATATACTGTACATTCCGTATTCATTACACAAGTTAGC
TTGGATTTGAGGATCTCAAGTATGAAATATTATGTACTGATCTACTACTTATATTAAAACTAAC
TCTTCTAGCATAATCTGTCATTATTACAATGGATTTAATTAGCATGCCATGATTCAAGCAGTTT
GCACTTACTTGCCAAGTCAAGAAGTGAGAAGTTAGAACTTGAGCATAAACAAGACGATGGAGCT
CTTCCATACTTATTCCCCCTATGTCATCATGCTCCTTGTGTAAAAGAAAATCTGCTTGGTCGCT
CCTAGCAGTCAATAACTCTATGGCATGAGTCACCATCCTGTTGAAAAGTCATCAAAATATAGTT
TAAAAGGGTTGTTTGGTAGAAGTTTTCTTAAAAGACAATAAAATAAGCTTCTACATGTTGAACC
AAAATGAGGATAGAGAGAAAATTAATAAAACCCACCAAGGACCAAACCCTCTTGAGCATTCTGC
CAATACAACCTGCAAATGTTTGAAAACTCAAGGAGTTTATAAGAAAAAAGAACAAAAGGGAGTA
AAACAATGGACAATACAACCTAGCAGTTTCAGATCCACATAGCTCACCTCAGTATTTTCCCCAA
TAATTCCAATTATTAGCCGCAGCAGCTTATGTGGACTAGACATTGGTTTCATCTTAACACATTT
CTGAGCTAGGTTGTACATGCTTTCAAACCCCTGACCCAAGAAAAGAATTAAATGGAATCTCAAA
TCTTGCAAAAAGATAAAAAATCATCAGCAGCATAGGATTAAGACACAAATAATTCGATAAACTT
AAAGAATAGTAAATATGCACTTACAACAGTGAATGGCCTTATGAACAGGAAGTGAGATATATAC
AGCTCTATCCAATGGGATGTTGCAGTGCAGAGAATCTCGGTGTTTCCCAGCATGATCTGGATCA
GATTTTTCAAGCCCTCCCTGGTTTGACGGTGATCGCATAGAACCCAGAATGCACTGGAATCCAG
CTTAGTTATTTGTTCTCGCCATTTCTCCCATGCCTAGAAAATAAAAGATATTAAGCAACATGGT
TATGAAAATAATATATATATAGGAAAAGAAGATAGAAAGATTCAAATATAATACTAAAATGCAC
AAGTACCTTCATAAAATCAGGTTTGGCTTTAAAGCATTCACCTAATTTTCCATTTTTTAATTCT
GGACGCATGCGTGGCATCATTGAAATTAGAACAGCTACAGTCTCAACTAGCCCATTCTCTGTCT
GCTCAATAACAGAAAAACACACAGGACTTAAAATGCAACTGTGAAAACAGATGCATGGATACCA
AGGAATCTTCATTTTGATAAAGATTCACATAATGAATCAAGAAGCACAAAACTCAACCTAAAAA
TGAAACCCAAACAACTTATGTTGGTTGGTTAAAAAAATTCAAGGACAAAACATTGTGTGTTTGG
GAGTGTGGTAGAGGTTGTTTTTCAAAGTGTTTTTCACTTGGAAATACATTAAAAAACTGTTTTT
TATTTTTTTAAAATTTATTTTTAACATCAGCACATCAAAACAATCCAAAAACACTAAAACAATT
AATTTGAAGCAAAAACAAAATTCAAATTTTGATGAAAAGCAGGTTCAACCTCATTGCCAAACAC
TCCCGATCCTCAAATTGTAATATATCAGCTCAATCATCAAATGTATGGTTATTACATGTTTATG
GACAGACATAAACTCCACATATGCCAAATAAAGACGCTCTCAAGCAAAGAGGTTTATATTAAAT
GAACAGTTAAGATTTTAATGTCAATTGACATTTACAGACCAACCAATACTTGGCCAGGCAAGCA
AAAAACAGTCACTAAAAATAGCATCTTCTCAAGGTGACAATCTAAAAGGCATAAAAAGTTTGCA
GAAAATGAAATTTAAGAATAATTTTCAAATGGTGTGTACATATTCAATCAATCATCATTAAATT
CTTACCAACCTCTCTACGGCTAATCTGATCCAGTTGATAAGATCCATGCAAGCGCAAAAGTTTC
ACCTGCAAGAAAAAAACATTAAGTCCTGCATTAAAACATTTGTCATCATTTCATCGCCTATGAG
AGGAACTATACCACTCAACATACTACAGGAAAGACTGGACCCAAGATCACTTTACCACAATCTC
TAGCCAACCAACTGCTAGTGCCGATGATATCACCTCCCAATATTTAGGATCATCTTCAATGAC
						
					

			
		

Sequences
Splice junction sequence	GGAAAGACTGGACCCAAGATCACTTTACCACAATCTCTAGCCAACCAACTGCTAGTGCCGATGA TATCACCTCCCAATATTTAGGATCATCTTCAATGACcaacatgagcaagtcagcagcatgccga gcagcatctggagttttcctatcacaaacctgctgtagcaatttcttgaaatccctatacctgt gacacatc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CAACATGAGCAAGTCAGCAGCATGCCGAGCAGCATCTGGAGTTTTCCTATCACAAACCTGCTGT AGCAATTTCTTGAAATCCCTATACCTGTGACACATCTAGTTTTAGAACCAAGATTGAAAATGAA AAGAAAAAAAAGAAACGGAAATGAAGAAGTAAAGGGAGGATTATGATCACTGCTGAGTTAGAGA AAACTTGTACTTGTGCAGAAACTCAAGACTCCCAGCAGGCTTTGATTTCGAACCCAACAATTCA ATTAAACCCTCCCATTGCTGTATAGACAAACAATATGAAAAAAAAATTACCAAGGTTATTATTA TTATTATAGCTCAAGTAATTTAGCATTGGCTGGCTGATCAAATCAATGATTGCAATGACAACCA CCTTGAAGCTTTCACCAGAGATTGACTTTCCAACAGAATCAAACAACCGCTGGGCAATCTTGTT AAGGAGAAATTCATCCCGAGCTTGCTGAAGCCAGAAAACTCCCAAACCTTTCCTACCATGCTTC CAGTGGTACACTCCAGCAATCTATACACAATTATTAAATTTGTTAGTATAAATGCCCAAGTACC TAAAGTCTTGCAATACTCAGGAGAATCTGGCACTAAAAGACTTCTGCGTGTATGATATAACGTG TTTACGTTTTACTATAAACAAAAGCTACAGGCAGAGAATTCACTGAGCTCAAAGATACAAGACT TTTGGTGTATTCATACATAAATAAAGTCGAGGATGTGTTTTAAGATTTCATATACCTTCATAAT GTTTGAGCTGACATGGTCGAGTTCATACAGACGGCAAATTTCTAAATTCTGCAAGCAGACAGAT AAATGTCTATCAATCAAAGATTTAAACATCAACTATAAATGCATCCAAAAAATTGACACAGGGA TGGCACTTCAAGATGAACCAATTACCTTAAGCAACAATTGATTGTGTTGGGCAGGCTGCCTGTA TAATAAAACCTCCAACAAACTCATTCCTTGCCTCATACACGATGTCAAGTAAACTGGAGCAATC TGCAGGCAGAAGAGAATTGAATTAAGAAATACTTGACAAAATAGGAACGGGTAAATCACTGCCA AGGTAATTACACAAAAAGGGGCAGTTAATAAGGACAAAAATAAGATAAAACAGTGCCTAAAAAA ATGAGCAATAGAACAGATAGAGAATATCAACCTCCACACTTCATATTCAAGAACCTTATACCTT GAAAATTACACAACCAGGAACTTTAAGGTTGAATCCCAAAGTAAATGGGTTGGCTCTCTCCAAG AACAGGCAGAATTTATTATTCGTTTTTAACTGAAACTAAATGCAATGAGGTAATAGAAAGTAAA TTGAAGTTAAACATCTCCTAGCATAAGGATAAATGAAAGGACATTTGAGTTTCTTTTTTATCCA AACAGGTCAGGTCTACTTTTGCATCAAAATAGATTGTGTTGGAGCTCCTTTATGACAGCCCGTG CTAGATGTCAAAGTTATATTGTTTAGATACAATTCTGCCTCTTCTACAGGAATTCAAATTTGTG AATGATTTATTCTTGAGCTCAGTTCCAATTGTGTACTAAATTACTAAATTGCAAATCCTTCTCC TTAAACCCCACTTTTGTATATATTCAAATATACTGTACATTCCGTATTCATTACACAAGTTAGC TTGGATTTGAGGATCTCAAGTATGAAATATTATGTACTGATCTACTACTTATATTAAAACTAAC TCTTCTAGCATAATCTGTCATTATTACAATGGATTTAATTAGCATGCCATGATTCAAGCAGTTT GCACTTACTTGCCAAGTCAAGAAGTGAGAAGTTAGAACTTGAGCATAAACAAGACGATGGAGCT CTTCCATACTTATTCCCCCTATGTCATCATGCTCCTTGTGTAAAAGAAAATCTGCTTGGTCGCT CCTAGCAGTCAATAACTCTATGGCATGAGTCACCATCCTGTTGAAAAGTCATCAAAATATAGTT TAAAAGGGTTGTTTGGTAGAAGTTTTCTTAAAAGACAATAAAATAAGCTTCTACATGTTGAACC AAAATGAGGATAGAGAGAAAATTAATAAAACCCACCAAGGACCAAACCCTCTTGAGCATTCTGC CAATACAACCTGCAAATGTTTGAAAACTCAAGGAGTTTATAAGAAAAAAGAACAAAAGGGAGTA AAACAATGGACAATACAACCTAGCAGTTTCAGATCCACATAGCTCACCTCAGTATTTTCCCCAA TAATTCCAATTATTAGCCGCAGCAGCTTATGTGGACTAGACATTGGTTTCATCTTAACACATTT CTGAGCTAGGTTGTACATGCTTTCAAACCCCTGACCCAAGAAAAGAATTAAATGGAATCTCAAA TCTTGCAAAAAGATAAAAAATCATCAGCAGCATAGGATTAAGACACAAATAATTCGATAAACTT AAAGAATAGTAAATATGCACTTACAACAGTGAATGGCCTTATGAACAGGAAGTGAGATATATAC AGCTCTATCCAATGGGATGTTGCAGTGCAGAGAATCTCGGTGTTTCCCAGCATGATCTGGATCA GATTTTTCAAGCCCTCCCTGGTTTGACGGTGATCGCATAGAACCCAGAATGCACTGGAATCCAG CTTAGTTATTTGTTCTCGCCATTTCTCCCATGCCTAGAAAATAAAAGATATTAAGCAACATGGT TATGAAAATAATATATATATAGGAAAAGAAGATAGAAAGATTCAAATATAATACTAAAATGCAC AAGTACCTTCATAAAATCAGGTTTGGCTTTAAAGCATTCACCTAATTTTCCATTTTTTAATTCT GGACGCATGCGTGGCATCATTGAAATTAGAACAGCTACAGTCTCAACTAGCCCATTCTCTGTCT GCTCAATAACAGAAAAACACACAGGACTTAAAATGCAACTGTGAAAACAGATGCATGGATACCA AGGAATCTTCATTTTGATAAAGATTCACATAATGAATCAAGAAGCACAAAACTCAACCTAAAAA TGAAACCCAAACAACTTATGTTGGTTGGTTAAAAAAATTCAAGGACAAAACATTGTGTGTTTGG GAGTGTGGTAGAGGTTGTTTTTCAAAGTGTTTTTCACTTGGAAATACATTAAAAAACTGTTTTT TATTTTTTTAAAATTTATTTTTAACATCAGCACATCAAAACAATCCAAAAACACTAAAACAATT AATTTGAAGCAAAAACAAAATTCAAATTTTGATGAAAAGCAGGTTCAACCTCATTGCCAAACAC TCCCGATCCTCAAATTGTAATATATCAGCTCAATCATCAAATGTATGGTTATTACATGTTTATG GACAGACATAAACTCCACATATGCCAAATAAAGACGCTCTCAAGCAAAGAGGTTTATATTAAAT GAACAGTTAAGATTTTAATGTCAATTGACATTTACAGACCAACCAATACTTGGCCAGGCAAGCA AAAAACAGTCACTAAAAATAGCATCTTCTCAAGGTGACAATCTAAAAGGCATAAAAAGTTTGCA GAAAATGAAATTTAAGAATAATTTTCAAATGGTGTGTACATATTCAATCAATCATCATTAAATT CTTACCAACCTCTCTACGGCTAATCTGATCCAGTTGATAAGATCCATGCAAGCGCAAAAGTTTC ACCTGCAAGAAAAAAACATTAAGTCCTGCATTAAAACATTTGTCATCATTTCATCGCCTATGAG AGGAACTATACCACTCAACATACTACAGGAAAGACTGGACCCAAGATCACTTTACCACAATCTC TAGCCAACCAACTGCTAGTGCCGATGATATCACCTCCCAATATTTAGGATCATCTTCAATGAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.103275504

Conservation Information
Conserved circRNAs	NA
PMCS	0.103275504

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							8822038-8818675(+)
8821040-8818205(-)
8818239-8822010(-)
						
					

						Potential amino acid sequence
						
							MTNMSKSAACRAASGVFLSQTCCSNFLKSLYLCRNSRLPAGFDFEPNNSIKPSHCLKLSPEIDF
PTESNNRWAILLRRNSSRAC*(+)
MMPRMRPELKNGKLGECFKAKPDFMKAWEKWREQITKLDSSAFWVLCDHRQTREGLKNLIQIML
GNTEILCTATSHWIELYISHFLFIRPFTVGFESMYNLAQKCVKMKPMSSPHKLLRLIIGIIGEN
TEVVLAECSRGFGPWMVTHAIELLTARSDQADFLLHKEHDDIGGISMEELHRLVYAQVLTSHFL
TWQIAPVYLTSCMRQGMSLLEVLLYRQPAQHNQLLLKNLEICRLYELDHVSSNIMKIAGVYHWK
HGRKGLGVFWLQQARDEFLLNKIAQRLFDSVGKSISGESFKQWEGLIELLGSKSKPAGSLEFLH
KYRDFKKLLQQVCDRKTPDAARHAADLLMLVIEDDPKYWEVISSALAVGWLEIVVKLLRLHGSY
QLDQISRRETENGLVETVAVLISMMPRMRPELKNGKLGECFKAKPDFMKAWEKWREQITKLDSS
AFWVLCDHRQTREGLKNLIQIMLGNTEILCTATSHWIELYISHFLFIRPFTVGFESMYNLAQKC
VKMKPMSSPHKLLRLIIGIIGENTEVVLAECSRGFGPWMVTHAIELLTARSDQADFLLHKEHDD
IGGISMEELHRLVYAQVLTSHFLTWQIAPVYLTSCMRQGMSLLEVLLYRQPAQHNQLLLKNLEI
CRLYELDHVSSNIMKIAGVYHWKHGRKGLGVFWLQQARDEFLLNKIAQRLFDSVGKSISGESFK
QWEGLIELLGSKSKPAGSLEFLHKYRDFKKLLQQVCDRKTPDAARHAADLLMLVIEDDPKYWEV
ISSALAVGWLEIVVKLLRLHGSYQLDQISRRETENGLVETVAVLISMMPRMRPELKNGKLGECF
KAKPDFMKAWEKWREQITKLDSSAFWVLCDHRQTREGLKNLIQIMLGNTEILCTATSHWIELYI
SHFLFIRPFTVGFESMYNLAQKCVKMKPMSSPHKLLRLIIGIIGENTEVVLAECSRGFGPWMVT
HAIELLTARSDQADFLLHKEHDDIGGISMEELHRLVYAQVLTSHFLTWQIAPVYLTSCMRQGMS
LLEVLLYRQPAQHNQLLLKNLEICRLYELDHVSSNIMKIAGVYHWKHGRKGLGVFWLQQARDEF
LLNKIAQRLFDSVGKSISGESFKQWEGLIELLGSKSKPAGSLEFLHKYRDFKKLLQQVCDRKTP
DAARHAADLLMLVIEDDPKYWEVISSALAVGWLEIVVKLLRLHGSYQLDQISRRETENGLVETV
AVLISMMPRMRPELKNGKLGECFKAKPDFMKAWEKWREQITKLDSSAFWVLCDHRQTREGLKNL
IQIMLGNTEILCTATSHWIELYISHFLFIRPFTVGFESMYNLAQKCVKMKPMSSPHKLLRLIIG
IIGENTEVVLAECSRGFGPWMVTHAIELLTARSDQADFLLHKEHDDIGGISMEELHRLVYAQVL
TSHFLTWQIAPVYLTSCMRQGMSLLEVLLYRQPAQHNQLLLKNLEICRLYELDHVSSNIMKIAG
VYHWKHGRKGLGVFWLQQARDEFLLNKIAQRLFDSVGKSISGESFKQWEGLIELLGSKSKPAGS
LEFLHKYRDFKKLLQQVCDRKTPDAARHAADLLML(-)
MLLGMLLTCSCWSLKMILNIGR*(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	8822038-8818675(+) 8821040-8818205(-) 8818239-8822010(-)
Potential amino acid sequence	MTNMSKSAACRAASGVFLSQTCCSNFLKSLYLCRNSRLPAGFDFEPNNSIKPSHCLKLSPEIDF PTESNNRWAILLRRNSSRAC(+) MMPRMRPELKNGKLGECFKAKPDFMKAWEKWREQITKLDSSAFWVLCDHRQTREGLKNLIQIML GNTEILCTATSHWIELYISHFLFIRPFTVGFESMYNLAQKCVKMKPMSSPHKLLRLIIGIIGEN TEVVLAECSRGFGPWMVTHAIELLTARSDQADFLLHKEHDDIGGISMEELHRLVYAQVLTSHFL TWQIAPVYLTSCMRQGMSLLEVLLYRQPAQHNQLLLKNLEICRLYELDHVSSNIMKIAGVYHWK HGRKGLGVFWLQQARDEFLLNKIAQRLFDSVGKSISGESFKQWEGLIELLGSKSKPAGSLEFLH KYRDFKKLLQQVCDRKTPDAARHAADLLMLVIEDDPKYWEVISSALAVGWLEIVVKLLRLHGSY QLDQISRRETENGLVETVAVLISMMPRMRPELKNGKLGECFKAKPDFMKAWEKWREQITKLDSS AFWVLCDHRQTREGLKNLIQIMLGNTEILCTATSHWIELYISHFLFIRPFTVGFESMYNLAQKC VKMKPMSSPHKLLRLIIGIIGENTEVVLAECSRGFGPWMVTHAIELLTARSDQADFLLHKEHDD IGGISMEELHRLVYAQVLTSHFLTWQIAPVYLTSCMRQGMSLLEVLLYRQPAQHNQLLLKNLEI CRLYELDHVSSNIMKIAGVYHWKHGRKGLGVFWLQQARDEFLLNKIAQRLFDSVGKSISGESFK QWEGLIELLGSKSKPAGSLEFLHKYRDFKKLLQQVCDRKTPDAARHAADLLMLVIEDDPKYWEV ISSALAVGWLEIVVKLLRLHGSYQLDQISRRETENGLVETVAVLISMMPRMRPELKNGKLGECF KAKPDFMKAWEKWREQITKLDSSAFWVLCDHRQTREGLKNLIQIMLGNTEILCTATSHWIELYI SHFLFIRPFTVGFESMYNLAQKCVKMKPMSSPHKLLRLIIGIIGENTEVVLAECSRGFGPWMVT HAIELLTARSDQADFLLHKEHDDIGGISMEELHRLVYAQVLTSHFLTWQIAPVYLTSCMRQGMS LLEVLLYRQPAQHNQLLLKNLEICRLYELDHVSSNIMKIAGVYHWKHGRKGLGVFWLQQARDEF LLNKIAQRLFDSVGKSISGESFKQWEGLIELLGSKSKPAGSLEFLHKYRDFKKLLQQVCDRKTP DAARHAADLLMLVIEDDPKYWEVISSALAVGWLEIVVKLLRLHGSYQLDQISRRETENGLVETV AVLISMMPRMRPELKNGKLGECFKAKPDFMKAWEKWREQITKLDSSAFWVLCDHRQTREGLKNL IQIMLGNTEILCTATSHWIELYISHFLFIRPFTVGFESMYNLAQKCVKMKPMSSPHKLLRLIIG IIGENTEVVLAECSRGFGPWMVTHAIELLTARSDQADFLLHKEHDDIGGISMEELHRLVYAQVL TSHFLTWQIAPVYLTSCMRQGMSLLEVLLYRQPAQHNQLLLKNLEICRLYELDHVSSNIMKIAG VYHWKHGRKGLGVFWLQQARDEFLLNKIAQRLFDSVGKSISGESFKQWEGLIELLGSKSKPAGS LEFLHKYRDFKKLLQQVCDRKTPDAARHAADLLML(-) MLLGMLLTCSCWSLKMILNIGR(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Liu et al., 2021

circRNA

Detail information of POPTR_0018s08040_circ_g.1

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