Plant Circular RNA Database

Detail information of Os07g0414800_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os07g0414800_circ_g.1
					
						ID in PlantcircBase
						osa_circ_033506
					
						Alias
						Os_ciR10872
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr7: 13075824-13076069  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, find_circ
					
						Parent gene
						
							Os07g0414800						
					
						Parent gene annotation
						
							F-actin capping protein, alpha subunit family protein. (Os07t041
4800-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os07g0414800_circ_igg.1 Os07g0414800_circ_igg.2 Os07g0414800_circ_igg.2 						
					
						Support reads
						2/1
					
						Tissues
						root/root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os07t0414800-01:2

General Information
CircRNA Name	Os07g0414800_circ_g.1
ID in PlantcircBase	osa_circ_033506
Alias	Os_ciR10872
Organism	Oryza sativa
Position	chr7: 13075824-13076069 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, find_circ
Parent gene	Os07g0414800
Parent gene annotation	F-actin capping protein, alpha subunit family protein. (Os07t041 4800-01)
Parent gene strand	-
Alternative splicing	Os07g0414800_circ_igg.1 Os07g0414800_circ_igg.2 Os07g0414800_circ_igg.2
Support reads	2/1
Tissues	root/root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os07t0414800-01:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							GCTAGCTAAGTAAAAGCAAACCTGTATTTTCCCTTTAATTTCGACAAGCTGTAATCCATCTATG
AATTCCAGAGTCCAAATTGAGCGCCAATTGCCGTTGctgcaatatggtggaatccttgcaatcg
atgttagtatccagctgcacatttccctcttcaaaataatgagcacctacctggtatatgcaca
tgtatctt

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							Transcript length: 157
Transcript exons: 13075824-13075901,13075991-13076069
CTGCAATATGGTGGAATCCTTGCAATCGATGTTAGTATCCAGCTGCACATTTCCCTCTTCAAAA
TAATGAGCACCTACCTGTATTTTCCCTTTAATTTCGACAAGCTGTAATCCATCTATGAATTCCA
GAGTCCAAATTGAGCGCCAATTGCCGTTG
						
						Genomic sequence
						
							CTGCAATATGGTGGAATCCTTGCAATCGATGTTAGTATCCAGCTGCACATTTCCCTCTTCAAAA
TAATGAGCACCTACCTGGTATATGCACATGTATCTTAGTTACCAACTTCAATTACAATAACAAT
AATTAACCATGTTTTAGCGCTAGCTAAGTAAAAGCAAACCTGTATTTTCCCTTTAATTTCGACA
AGCTGTAATCCATCTATGAATTCCAGAGTCCAAATTGAGCGCCAATTGCCGTTG

Sequences
Splice junction sequence	GCTAGCTAAGTAAAAGCAAACCTGTATTTTCCCTTTAATTTCGACAAGCTGTAATCCATCTATG AATTCCAGAGTCCAAATTGAGCGCCAATTGCCGTTGctgcaatatggtggaatccttgcaatcg atgttagtatccagctgcacatttccctcttcaaaataatgagcacctacctggtatatgcaca tgtatctt
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 157 Transcript exons: 13075824-13075901,13075991-13076069 CTGCAATATGGTGGAATCCTTGCAATCGATGTTAGTATCCAGCTGCACATTTCCCTCTTCAAAA TAATGAGCACCTACCTGTATTTTCCCTTTAATTTCGACAAGCTGTAATCCATCTATGAATTCCA GAGTCCAAATTGAGCGCCAATTGCCGTTG
Genomic sequence	CTGCAATATGGTGGAATCCTTGCAATCGATGTTAGTATCCAGCTGCACATTTCCCTCTTCAAAA TAATGAGCACCTACCTGGTATATGCACATGTATCTTAGTTACCAACTTCAATTACAATAACAAT AATTAACCATGTTTTAGCGCTAGCTAAGTAAAAGCAAACCTGTATTTTCCCTTTAATTTCGACA AGCTGTAATCCATCTATGAATTCCAGAGTCCAAATTGAGCGCCAATTGCCGTTG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.31103794

Conservation Information
Conserved circRNAs	NA
PMCS	0.31103794

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							13076032-13076020(+)
13075875-13076006(-)
						
						Potential amino acid sequence
						
							MNSRVQIERQLPLLQYGGILAIDVSIQLHISLFKIMSTYLYFPFNFDKL*(+)
MCSWILTSIARIPPYCSNGNWRSIWTLEFIDGLQLVEIKGKIQVGAHYFEEGNVQLDTNIDCKD
STILQQRQLALNLDSGIHRWITACRN*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	13076032-13076020(+) 13075875-13076006(-)
Potential amino acid sequence	MNSRVQIERQLPLLQYGGILAIDVSIQLHISLFKIMSTYLYFPFNFDKL(+) MCSWILTSIARIPPYCSNGNWRSIWTLEFIDGLQLVEIKGKIQVGAHYFEEGNVQLDTNIDCKD STILQQRQLALNLDSGIHRWITACRN(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os07g0414800_circ_g.1

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