Detail information of GLYMA_13G340300_circ_g.1


General Information
CircRNA Name GLYMA_13G340300_circ_g.1
ID in PlantcircBase gma_circ_009183
Alias circRNA2609
Organism Glycine max
Position chr13: 43230272-43231759  JBrowse»
Reference genome v2.0.38
Type   e-circRNA
Identification method CIRI, CIRCexplorer
Parent gene GLYMA_13G340300
Parent gene annotation hypothetical protein
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues pod
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered KRH23139:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGTCCACCGACCACCAGTTACTGGATCTCAGGACTATGAAATCAGGAAACGTGGGACTTCTGTG
GGTTCTCCAGAGGTTCATCTATCTGCAAGACTTCAGgaatccctggctcgggctcatggttcac
aatgtggattttgtactcctggttttgttatgtccatgtatgcattattacggtcaagtcaaac
accaccta
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1488
Transcript exons: 43230272-43231759
GAATCCCTGGCTCGGGCTCATGGTTCACAATGTGGATTTTGTACTCCTGGTTTTGTTATGTCCA
TGTATGCATTATTACGGTCAAGTCAAACACCACCTAGTGAAGAACAAATTGAAGAATGCCTTGC
AGGAAATTTATGTCGGTGCACTGGTTACAGACCAATATTTGATGCATTCCGGGTCTTTGCAAAA
ACTAGCAATGACTTATATACTGGGGTTTCTTCATTGAGCCTTGAAGAAGGAAAGTCTGTTTGCC
CATCAACAGGAAAACCCTGTTCATGTAATTTAAGCAATACAAATGATAAATGCGTAGGTGGTGA
TAATGGATATGAACCTACTTCCTATAATGAAATAGATGGGACCAAATACACAGAAAGGGAACTT
ATTTTTCCTCCTGAACTGTTGTTAAGGACACCAACCTCATTAAATTTGACTGGATTTGGTGGGC
TAATGTGGTATCGGCCTTTAACACTTCAACATGTATTGGATTTAAAAGCCAAATACACTGATGC
AAAGTTGCTAGTTGGTAATACTGAGGTAGGAATTGAGATGAGACTAAAGAGAATGCCGTATCGG
GTTCTAATTTCTGTAATGCATGTGCCAGAATTAAATGTTTTGGGTGCAAAGGATGATGGCTTAG
AGATAGGTGCTGCAGTAAGACTATCTGATCTTATGAATTTTTTCAAAAAGGTTGTAACTGAGCG
AGCTGCTCATGAAACTTTGTCTTGTAAGGCTTTTATTGAGCAACTTAAATGGTTTGCTGGAACA
CAGATAAGAAATGCTGCATCAGTTGGCGGGAATATATGTACTGCCAGTCCAATATCAGATCTGA
ATCCTCTATGGATGGCAGCTAGAGCAAAATTTCGAATTATTGATGCTAAAGGAAACATCAGGAC
AGTCCTGGCCGAAAATTTCTTCCTCCCGGGTTACCGTAAAGTGAATTTAGCAAGTGGTGAAATC
TTGCTGTCAGTATTCCTGCCTTGGAATAGGACTTTTGAGTTTGTGAAAGAATTTAAACAGTCTC
ATAGAAGGGATGATGATATTGCAATTGTAAATGCAGGTATTCGTGTTCATCTTCAGGAACATAG
TGAAAACTGTGTGGTTGCTGATGCATCAATATTTTATGGTGGGGTGGCTCCATATTCACTTGCA
GCAACAAAAACTAAGGAATTTCTCATAGGAAAGAATTGGAACCAAGATCTGTTGCAAAATGCAT
TGAAAGTCCTACAAAAGGATATATTACTCAAGGAAGATGCTCCTGGCGGAATGGTAGAGTTCCG
GAAATCTTTGACTCTAAGTTTCTTTTTTAAATTTTTTCTGTGGGTGTCTCATCAAATGGATAGC
GTCAAAGAGAGTATACCATCATCCCATCTATCTGCTGTGCACTCAGTCCACCGACCACCAGTTA
CTGGATCTCAGGACTATGAAATCAGGAAACGTGGGACTTCTGTGGGTTCTCCAGAGGTTCATCT
ATCTGCAAGACTTCAG

Genomic sequence GAATCCCTGGCTCGGGCTCATGGTTCACAATGTGGATTTTGTACTCCTGGTTTTGTTATGTCCA
TGTATGCATTATTACGGTCAAGTCAAACACCACCTAGTGAAGAACAAATTGAAGAATGCCTTGC
AGGAAATTTATGTCGGTGCACTGGTTACAGACCAATATTTGATGCATTCCGGGTCTTTGCAAAA
ACTAGCAATGACTTATATACTGGGGTTTCTTCATTGAGCCTTGAAGAAGGAAAGTCTGTTTGCC
CATCAACAGGAAAACCCTGTTCATGTAATTTAAGCAATACAAATGATAAATGCGTAGGTGGTGA
TAATGGATATGAACCTACTTCCTATAATGAAATAGATGGGACCAAATACACAGAAAGGGAACTT
ATTTTTCCTCCTGAACTGTTGTTAAGGACACCAACCTCATTAAATTTGACTGGATTTGGTGGGC
TAATGTGGTATCGGCCTTTAACACTTCAACATGTATTGGATTTAAAAGCCAAATACACTGATGC
AAAGTTGCTAGTTGGTAATACTGAGGTAGGAATTGAGATGAGACTAAAGAGAATGCCGTATCGG
GTTCTAATTTCTGTAATGCATGTGCCAGAATTAAATGTTTTGGGTGCAAAGGATGATGGCTTAG
AGATAGGTGCTGCAGTAAGACTATCTGATCTTATGAATTTTTTCAAAAAGGTTGTAACTGAGCG
AGCTGCTCATGAAACTTTGTCTTGTAAGGCTTTTATTGAGCAACTTAAATGGTTTGCTGGAACA
CAGATAAGAAATGCTGCATCAGTTGGCGGGAATATATGTACTGCCAGTCCAATATCAGATCTGA
ATCCTCTATGGATGGCAGCTAGAGCAAAATTTCGAATTATTGATGCTAAAGGAAACATCAGGAC
AGTCCTGGCCGAAAATTTCTTCCTCCCGGGTTACCGTAAAGTGAATTTAGCAAGTGGTGAAATC
TTGCTGTCAGTATTCCTGCCTTGGAATAGGACTTTTGAGTTTGTGAAAGAATTTAAACAGTCTC
ATAGAAGGGATGATGATATTGCAATTGTAAATGCAGGTATTCGTGTTCATCTTCAGGAACATAG
TGAAAACTGTGTGGTTGCTGATGCATCAATATTTTATGGTGGGGTGGCTCCATATTCACTTGCA
GCAACAAAAACTAAGGAATTTCTCATAGGAAAGAATTGGAACCAAGATCTGTTGCAAAATGCAT
TGAAAGTCCTACAAAAGGATATATTACTCAAGGAAGATGCTCCTGGCGGAATGGTAGAGTTCCG
GAAATCTTTGACTCTAAGTTTCTTTTTTAAATTTTTTCTGTGGGTGTCTCATCAAATGGATAGC
GTCAAAGAGAGTATACCATCATCCCATCTATCTGCTGTGCACTCAGTCCACCGACCACCAGTTA
CTGGATCTCAGGACTATGAAATCAGGAAACGTGGGACTTCTGTGGGTTCTCCAGAGGTTCATCT
ATCTGCAAGACTTCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.190671259
Functional Information
Coding potential Y
Potential coding position 43230330-43231756(+)
43231696-43230497(+)
Potential amino acid sequence MSMYALLRSSQTPPSEEQIEECLAGNLCRCTGYRPIFDAFRVFAKTSNDLYTGVSSLSLEEGKS
VCPSTGKPCSCNLSNTNDKCVGGDNGYEPTSYNEIDGTKYTERELIFPPELLLRTPTSLNLTGF
GGLMWYRPLTLQHVLDLKAKYTDAKLLVGNTEVGIEMRLKRMPYRVLISVMHVPELNVLGAKDD
GLEIGAAVRLSDLMNFFKKVVTERAAHETLSCKAFIEQLKWFAGTQIRNAASVGGNICTASPIS
DLNPLWMAARAKFRIIDAKGNIRTVLAENFFLPGYRKVNLASGEILLSVFLPWNRTFEFVKEFK
QSHRRDDDIAIVNAGIRVHLQEHSENCVVADASIFYGGVAPYSLAATKTKEFLIGKNWNQDLLQ
NALKVLQKDILLKEDAPGGMVEFRKSLTLSFFFKFFLWVSHQMDSVKESIPSSHLSAVHSVHRP
PVTGSQDYEIRKRGTSVGSPEVHLSARLQESLARAHGSQCGFCTPGFVMSMYALLRSSQTPPSE
EQIEECLAGNLCRCTGYRPIFDAFRVFAKTSNDLYTGVSSLSLEEGKSVCPSTGKPCSCNLSNT
NDKCVGGDNGYEPTSYNEIDGTKYTERELIFPPELLLRTPTSLNLTGFGGLMWYRPLTLQHVLD
LKAKYTDAKLLVGNTEVGIEMRLKRMPYRVLISVMHVPELNVLGAKDDGLEIGAAVRLSDLMNF
FKKVVTERAAHETLSCKAFIEQLKWFAGTQIRNAASVGGNICTASPISDLNPLWMAARAKFRII
DAKGNIRTVLAENFFLPGYRKVNLASGEILLSVFLPWNRTFEFVKEFKQSHRRDDDIAIVNAGI
RVHLQEHSENCVVADASIFYGGVAPYSLAATKTKEFLIGKNWNQDLLQNALKVLQKDILLKEDA
PGGMVEFRKSLTLSFFFKFFLWVSHQMDSVKESIPSSHLSAVHSVHRPPVTGSQDYEIRKRGTS
VGSPEVHLSARLQESLARAHGSQCGFCTPGFVMSMYALLRSSQTPPSEEQIEECLAGNLCRCTG
YRPIFDAFRVFAKTSNDLYTGVSSLSLEEGKSVCPSTGKPCSCNLSNTNDKCVGGDNGYEPTSY
NEIDGTKYTERELIFPPELLLRTPTSLNLTGFGGLMWYRPLTLQHVLDLKAKYTDAKLLVGNTE
VGIEMRLKRMPYRVLISVMHVPELNVLGAKDDGLEIGAAVRLSDLMNFFKKVVTERAAHETLSC
KAFIEQLKWFAGTQIRNAASVGGNICTASPISDLNPLWMAARAKFRIIDAKGNIRTVLAENFFL
PGYRKVNLASGEILLSVFLPWNRTFEFVKEFKQSHRRDDDIAIVNAGIRVHLQEHSENCVVADA
SIFYGGVAPYSLAATKTKEFLIGKNWNQDLLQNALKVLQKDILLKEDAPGGMVEFRKSLTLSFF
FKFFLWVSHQMDSVKESIPSSHLSAVHSVHRPPVTGSQDYEIRKRGTSVGSPEVHLSARLQESL
ARAHGSQCGFCTPGFVMSMYALLRSSQTPPSEEQIEECLAGNLCRCTGYRPIFDAFRVFAKTSN
DLYTGVSSLSLEEGKSVCPSTGKPCSCNLSNTNDKCVGGDNGYEPTSYNEIDGTKYTERELIFP
PELLLRTPTSLNLTGFGGLMWYRPLTLQHVLDLKAKYTDAKLLVGNTEVGIEMRLKRMPYRVLI
SVMHVPELNVLGAKDDGLEIGAAVRLSDLMNFFKKVVTERAAHETLSCKAFIEQLKWFAGTQIR
NAASVGGNICTASPISDLNPLWMAARAKFRIIDAKGNIRTVLAENFFLPGYRKVNLASGEILLS
VFLPWNRTFEFVKEFKQSHRRDDDIAIVNAGIRVHLQEHSENCVVADASIFYGGVAPYSLAATK
TKEFLIGKNWNQDLLQNALKVLQKDILLKEDAPGGMVEFRKSLTLSFFFKFFLWVSHQMDSVKE
SIPSSHLSAVHSVHRPPVTGSQDYEIRKRGTSVGSPEVHLSARLQ(+)
MKSGNVGLLWVLQRFIYLQDFRNPWLGLMVHNVDFVLLVLLCPCMHYYGQVKHHLVKNKLKNAL
QEIYVGALVTDQYLMHSGSLQKLAMTYILGFLH*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021a