Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | GLYMA_13G340300_circ_g.1 |
| ID in PlantcircBase | gma_circ_009183 |
| Alias | circRNA2609 |
| Organism | Glycine max |
| Position | chr13: 43230272-43231759 JBrowse» |
| Reference genome | v2.0.38 |
| Type | e-circRNA |
| Identification method | CIRI, CIRCexplorer |
| Parent gene | GLYMA_13G340300 |
| Parent gene annotation |
hypothetical protein |
| Parent gene strand | + |
| Alternative splicing | NA |
| Support reads | NA |
| Tissues | pod |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | KRH23139:1 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.190671259 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
43230330-43231756(+) 43231696-43230497(+) |
| Potential amino acid sequence |
MSMYALLRSSQTPPSEEQIEECLAGNLCRCTGYRPIFDAFRVFAKTSNDLYTGVSSLSLEEGKS VCPSTGKPCSCNLSNTNDKCVGGDNGYEPTSYNEIDGTKYTERELIFPPELLLRTPTSLNLTGF GGLMWYRPLTLQHVLDLKAKYTDAKLLVGNTEVGIEMRLKRMPYRVLISVMHVPELNVLGAKDD GLEIGAAVRLSDLMNFFKKVVTERAAHETLSCKAFIEQLKWFAGTQIRNAASVGGNICTASPIS DLNPLWMAARAKFRIIDAKGNIRTVLAENFFLPGYRKVNLASGEILLSVFLPWNRTFEFVKEFK QSHRRDDDIAIVNAGIRVHLQEHSENCVVADASIFYGGVAPYSLAATKTKEFLIGKNWNQDLLQ NALKVLQKDILLKEDAPGGMVEFRKSLTLSFFFKFFLWVSHQMDSVKESIPSSHLSAVHSVHRP PVTGSQDYEIRKRGTSVGSPEVHLSARLQESLARAHGSQCGFCTPGFVMSMYALLRSSQTPPSE EQIEECLAGNLCRCTGYRPIFDAFRVFAKTSNDLYTGVSSLSLEEGKSVCPSTGKPCSCNLSNT NDKCVGGDNGYEPTSYNEIDGTKYTERELIFPPELLLRTPTSLNLTGFGGLMWYRPLTLQHVLD LKAKYTDAKLLVGNTEVGIEMRLKRMPYRVLISVMHVPELNVLGAKDDGLEIGAAVRLSDLMNF FKKVVTERAAHETLSCKAFIEQLKWFAGTQIRNAASVGGNICTASPISDLNPLWMAARAKFRII DAKGNIRTVLAENFFLPGYRKVNLASGEILLSVFLPWNRTFEFVKEFKQSHRRDDDIAIVNAGI RVHLQEHSENCVVADASIFYGGVAPYSLAATKTKEFLIGKNWNQDLLQNALKVLQKDILLKEDA PGGMVEFRKSLTLSFFFKFFLWVSHQMDSVKESIPSSHLSAVHSVHRPPVTGSQDYEIRKRGTS VGSPEVHLSARLQESLARAHGSQCGFCTPGFVMSMYALLRSSQTPPSEEQIEECLAGNLCRCTG YRPIFDAFRVFAKTSNDLYTGVSSLSLEEGKSVCPSTGKPCSCNLSNTNDKCVGGDNGYEPTSY NEIDGTKYTERELIFPPELLLRTPTSLNLTGFGGLMWYRPLTLQHVLDLKAKYTDAKLLVGNTE VGIEMRLKRMPYRVLISVMHVPELNVLGAKDDGLEIGAAVRLSDLMNFFKKVVTERAAHETLSC KAFIEQLKWFAGTQIRNAASVGGNICTASPISDLNPLWMAARAKFRIIDAKGNIRTVLAENFFL PGYRKVNLASGEILLSVFLPWNRTFEFVKEFKQSHRRDDDIAIVNAGIRVHLQEHSENCVVADA SIFYGGVAPYSLAATKTKEFLIGKNWNQDLLQNALKVLQKDILLKEDAPGGMVEFRKSLTLSFF FKFFLWVSHQMDSVKESIPSSHLSAVHSVHRPPVTGSQDYEIRKRGTSVGSPEVHLSARLQESL ARAHGSQCGFCTPGFVMSMYALLRSSQTPPSEEQIEECLAGNLCRCTGYRPIFDAFRVFAKTSN DLYTGVSSLSLEEGKSVCPSTGKPCSCNLSNTNDKCVGGDNGYEPTSYNEIDGTKYTERELIFP PELLLRTPTSLNLTGFGGLMWYRPLTLQHVLDLKAKYTDAKLLVGNTEVGIEMRLKRMPYRVLI SVMHVPELNVLGAKDDGLEIGAAVRLSDLMNFFKKVVTERAAHETLSCKAFIEQLKWFAGTQIR NAASVGGNICTASPISDLNPLWMAARAKFRIIDAKGNIRTVLAENFFLPGYRKVNLASGEILLS VFLPWNRTFEFVKEFKQSHRRDDDIAIVNAGIRVHLQEHSENCVVADASIFYGGVAPYSLAATK TKEFLIGKNWNQDLLQNALKVLQKDILLKEDAPGGMVEFRKSLTLSFFFKFFLWVSHQMDSVKE SIPSSHLSAVHSVHRPPVTGSQDYEIRKRGTSVGSPEVHLSARLQ(+) MKSGNVGLLWVLQRFIYLQDFRNPWLGLMVHNVDFVLLVLLCPCMHYYGQVKHHLVKNKLKNAL QEIYVGALVTDQYLMHSGSLQKLAMTYILGFLH*(+) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Ma et al., 2021a |