Detail information of BGIOSGA004691_circ_igg.1


General Information
CircRNA Name BGIOSGA004691_circ_igg.1
ID in PlantcircBase osi_circ_010865
Alias Chr01:36137608_36138775(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 38270053-38271220  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA004691_circ_igg.2 BGIOSGA004691_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GACACTAGAGAGTGATCTTTCTCAGCTTCGTGACAAGGGTATTGATGCACAGATTGCATCTGGT
GGTGGAAGGATGTATGTTACCATGGACCGCTATGAGggtatagcatctagtaggcgatggcgag
ctccggtttctcatggacgctgcccgaccaccccaagctccccaaggggaagacggtagccctc
gtcgtgct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTATAGCATCTAGTAGGCGATGGCGAGCTCCGGTTTCTCATGGACGCTGCCCGACCACCCCAA
GCTCCCCAAGGGGAAGACGGTAGCCCTCGTCGTGCTTGACGGATGGGGCGAGGCCAACGCCGAC
AAGTACAACTGCATCCATGTCGCCCAGACGCCCGTCATGGATTCGCTCAAGAATGTATGCTTCC
TTGCCACATGATTATGATTTGGGGTCATGCAATTTTTTCTGCCTTTAATGTTGTTAGTGATTGC
AAATTGCTTTTCTTGTTTTATTTTCTGTAGATTAGGCATCCTGCTTGTAACTGTTTGGTTATCC
CATTGACAACAGACAGTTTGGCTAAGATGATTAAGTCGTAGGTTTAGCCTGGACATATATTTAA
TGAAGTTGCATCCATGATTCCATGTTGTGTTGGGTTGCCCTTGTGCTATGAATTTACGCCTTTG
CCTGCACTCTAGTTTCAGCAGTTAACTCTATTTTTTTTGTACATTAAAAGGGTGCTCCCGAGAG
GTGGAGATTAGTGAAGGCTCATGGAACAGCTGTTGGTCTTCCTAGCGAAGATGACATGGGCAAC
AGCGAAGTGGGTCACAATGCTCTTGGTGCTGGTCGCATTTTTGCTCAGGGGTAAGCTGTTTTGA
GTTTTGATTCATTTGGGAACTATAGGTTGGATCACTCTGCATGTTTTGTGACAAGCGTGTTTCA
TTCTCACTGTAGTGCTAAGCTTGTGGACCTTGCTCTTGCCTCTGGGAAAATTTATGATGGAGAG
GGGTTCAATTACATCAAAGAATGTTTTGACAAGGGTACCCTGCACCTTATTGGTTTGTTGAGTG
ATGGAGGCGTTCACTCCCGTCTTGATCAAGTGCAGGTTTGTTAAGCTCTGATGAATGGCGCCTT
ATATTGCAATGTGTTGTTTATTTACTGTCAATTTTTAAATTGGTGTGTTCTGTTTCACTCTATT
TCAGCTGCTTCTGAAAGGTGCCAGTGAGAGGGGAGCAAAAAGAATTCGTGTTCACATTCTTACT
GATGGACGCGATGTTTTGGATGGCAGCAGTGTTGGTTTTGTAGAGACACTAGAGAGTGATCTTT
CTCAGCTTCGTGACAAGGGTATTGATGCACAGATTGCATCTGGTGGTGGAAGGATGTATGTTAC
CATGGACCGCTATGAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021