Detail information of PGSC0003DMG400022604_circ_g.2


General Information
CircRNA Name PGSC0003DMG400022604_circ_g.2
ID in PlantcircBase stu_circ_000694
Alias chr05:6559740|6564227
Organism Solanum tuberosum
Position chr5: 6559741-6564227  JBrowse»
Reference genome 3.0.38
Type   ue-circRNA
Identification method CIRI2
Parent gene PGSC0003DMG400022604
Parent gene annotation Serine/threonine-protein phosphatase
Parent gene strand +
Alternative splicing PGSC0003DMG400022604_circ_g.1
Support reads NA
Tissues stem
Exon boundary   No-Yes
Splicing signals   GT-GG
Number of exons covered PGSC0003DMT400058216:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTTGGACAGGATATAGCATCTCAGTTTAATCACACTAATGGTCTCTCACTGATTTCTAGAGCC
CATCAGCTTGTCATGGAAGGTTTTAATTGGTGTCAGtgattgtagaggataattttgtttgaaa
aaatgccgtcgcacgcggatgtagatcggcagatcgagcaattgatggagtgcaagccgttatc
ggaggcgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGATTGTAGAGGATAATTTTGTTTGAAAAAATGCCGTCGCACGCGGATGTAGATCGGCAGATCG
AGCAATTGATGGAGTGCAAGCCGTTATCGGAGGCGGAGGTGAAGACGTTGTGTGAACAAGCAAG
GGCGATACTAGTGGAGGAATGGAATGTGCAACCGGTGAAATGTCCGGTGACGGTGTGCGGTGAT
ATCCACGGACAGTTTTACGATCTGATTGAGCTTTTTCGAATCGGCGGCAACGCTCCTGATACTA
ATTATCTCTTCATGGGAGATTATGTTGGTGAGTTTTGGTGATTAGGTTTCATTTTTTTTTATAG
GAATTTGCATATGATTTGTTGGATTTTTTTGTTAATTTTCTATGCATTTGATTTGTTGTAGTGA
CATAGGTGAAATGTGAATGGACATAAATAGGATGTAGAAATAAGAGTGTTTCTGCTAATGTAGG
CAGCACTTGAAAGATAGTATAGGTTGTGCTTTTGTGTATCAAGTAGATTGTGAAGTGTAAGGGT
TCTGCAAAGTAGCAAGCTTTATGTTGGTTATTTTGTGGTTTGGCGTGATTCGGGCTTGTATTTC
TCAAGATATTCATGATAAGGATGATATGTGGTTGGGCTGTTCATTTATTGGTAGTGTTACTATA
ATGTGTCGGACAAATGAAGCTTTATTTTGATCTATTTGTCGTTTATACTCGTGAATGATGACGC
GTGGTTGTGATGTGGATCTCTAATGTACTTGGTGGTTCGAATATGACAAAGTAACGTCATGGCA
TTGATATAATGTTTGGAGGCAAATGTGGGAGATGTTTCTCTTCATTTGGTGTATTTCTTTCGGT
GCTAAACACGCTCATTTTCATTTGTTTTCTGTATATAGTTTACTGAAAAGGCAGTGTTCTCTCA
ACTTACATCTGATAAGCATGGGTTCCATAAAATGACTTAACTGTCTTTTGTTTTAAATGACTGT
TTTGATGGAGGCTTCCTTTTTAGTTTTTTTTCCTGAATATTTTTGCATCTAAGGTAGATTTCAT
CATATACATCTCCACTCCATAAATTGCGATGACAGTGTACATTTTATTTCATGCTTACTTATTT
GTATGTTGACTAGTACCTCGGTTTCCTTGTTGGTCAAGTACATTAGCATTCATTGTTTATCATT
AATAATTGCCTAATTAATGCAGACCGTGGATACTATTCTGTCGAGACTGTCTCACTATTGGTTG
CTCTGAAGGTCCGTTATAGAGATAGAATCACAATTCTTAGGGGAAACCACGAAAGCCGACAGAT
CACTCAAGTGTGAGTCGCTTACATTTTGTTCATATTGAAGTGCGTAAGTGAGGTTGTCTGAAAA
GATAATTGGTCTTTCTTAACAGCTGATATTCAGATGTTCCTTCTTTTCGATTGCTTAAACGATC
TGGTTTATGTATGATATTAGGGGTTTTACATTTATGCAATGCTACTTTATCCAAAAAAAAGAGA
GAAGATGTTTCTGCACTGTTCTTATATTTTCCATTTAATCTACTGAACTGTTATTTTTCCAATT
ACAAGAATTTAGAACTAATATGAAATGCTGCCTAAGTATGTAAATAGTTTTCCCATTTGGTGCA
CTCTTTATATTTGGTAATGGTCTTCTTTATGCTGTTTGGTGCATGATACTTTTATATGTGTTTC
TGTCACAGTGTCACATAGAGTTTTACTTGTATAGGATGTTCCTAGATGCCACTTTCTTTAAAAA
TTTATCCAGTTTGGTGGATTTCTCTTATTTTGACTTTCTGCTGTGTTAGCATCCTCTTTGCTTC
TCCTTGGGTTTGGGAAGAGTAGCAATGTAAATTCTATGCTTATATGGCTCAAATATCCTTTCTT
GAATTGTGTATGCTCTTATTGCACTCAAGCAACATGTATAATGGACTGATGCTTCTCTTCAATG
TACCCAGTACAACTCTTCTTTACATTTCTCACCCTCTTTCCAGAAATAAAAGAAAATAAAAAAG
GAACATGGAGGTCAGGTGTGAGAATTCAGGTTATCAACTCCTGGTTTTCAGTAAGAAGTTGAAG
AGAGAAAGAAGACAAACGTGTTTCTTGAATTCTATGCAGCAAAAACATTACTTAGGTTGCGGGT
TTTCCTTGTCATAAAAAAAAAAAAAAACATTACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAACATTAC
TTAGGTAATGTCAATGAGAAGGGAGCAATACTTTTGGAGAATCAATGATGGCCTTCTCATCCCC
ATGCTATTTGACAAGATATGTTTGTTCATTGCTTCGGTTTTCCAGCTCCCATTGTGGACCTTGA
TCACTGATCATGATTATGTGCAAGGGGATTACAAGGTGGGGAATTTGAACCCTCACCAACAAGG
TGAAAATTCAGGCAACTGGACTACTAAAATTCCTAAGTATTAGGTTAATCAGGTTGATTAAGCT
TTGATAGAAATTGGTCTAGTTGAACTGCTGGAATAATCCGAGAACTATTGTAATTCTTCCTGGA
GATTGAGATACCAATACAAGCAAAATCGTTTACAGGGTCTATGCGAAGATCATGTATACCTGAA
GTGAAGCTCCTAATATTGCAACTCCCCACCCCTAGTCTCTAAAGTCATGAAGCTCTTTGAATGG
ACAAACTTAGCAATCAAATTCAACAGGAGGATATGGAGGATGTAACTGAGTAGTTGGACAATGA
TGCCATATTATAAGCTTGAACGTTAAAGTTGCTAAATCTTTTAGGAAGTGTATCTTCTTACGCA
TGTGTTTTTAGTTATCTTTCAACCAAAGGATTTGCATTGTTAACTTGAGTCACACTTGGGCATT
ACACACCCTCCATTTTTGCATTGAGATAATTCTTTAGAGCACAAGGTTCACTTAAGCAAAACTT
TGTTCTTTAACCACTCGATAGATGTTTAACTTATGGTTACTTATCAATGAAGGTATCTCTACGC
AATCCTTGTAGTTTTTTATTTGGCAAGTATATTTTTGGGCAGTCTTGTGGGGATGAATCATCTA
TGCTACTGCTTCTCATGATCAGCTTCCCTACTTGTTTTATGCTGAATACAATATGACTGCAGGC
TCTAGTCATGTTCACATTAATTGACAGATCCCTTTTCCTGTTAGGTATGGTTTTTATGATGAAT
GCTTGAGGAAGTATGGAAATGCTAATGTTTGGAAGTATTTCACTGATCTCTTTGATTATCTACC
ATTAACGGCACTCATAGAGAGTCAGGTTTGAGCTCTTACTGAACTGGCAATTTACTTGAACATT
ATTGTTAGCGGGTTTTAACTTGCCTAATTTACTTAAAACTGTAGATATTCTGTTTGCATGGAGG
ACTCTCACCATCCCTTGATACACTCGATAACATCCGAGCACTGGACCGTATACAAGAGGTATAG
AAATAGTTGTGTGATTCAAACTTTACATGTTCATGATATGTTAAACTAGTTTGCGTTGTATTTT
GTCACTGCCTGTTCTCCCTCCTCTTGCTCTATCCGACACCATGTATCAAGTTAATTTCCTATTT
ACCTAACAAAATTGATTATTATGGCACAAGAGGACTACAGATGTGGTTACATCCTTTTTATTCA
ACAGAACTACAGATAACCAAACAAATCAAGGCATGAACAGGAAGAAAATTATGTATTTTTTTAT
AATGAGTTCGAAAGAGTCTTATTTTCTTTTCTAATGTGTTGTAGAATAGGTTTGACAATGTTTT
GTATATGTTGCATAGAGGCTTGTAGTGTAGTCTATTCACCAGTGAATGTGATCGACTTACTATA
ACACTTTCCTATTTCTTAGTTGCCCTACACTTATTTGCTCTAGTCGCTTCTATTATTTCAGACG
TTTCATGATTTTTATATCTTTATGGCAATGTTACTAATCCTGTACTATTGCTTCTTTGTTGTGG
TTGTTAGGTGCCACATGAAGGGCCGATGTGTGATCTCCTGTGGTCTGATCCAGATGATCGCTGT
GGTTGGGGAATATCACCTCGGGGGGCTGGTTACACATTTGGACAGGATATAGCATCTCAGTTTA
ATCACACTAATGGTCTCTCACTGATTTCTAGAGCCCATCAGCTTGTCATGGAAGGTTTTAATTG
GTGTCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.103937336
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2018