Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Os12g0433500_circ_g.3 |
ID in PlantcircBase | osa_circ_011386 |
Alias | NA |
Organism | Oryza sativa |
Position | chr12: 14027485-14036083 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os12g0433500 |
Parent gene annotation |
Similar to FU (FUSED); protein serine/threonine kinase. (Os12t04 33500-01) |
Parent gene strand | - |
Alternative splicing | Os12g0433500_circ_g.1 Os12g0433500_circ_g.2 Os12g0433500_circ_g.4 Os12g0433500_circ_g.5 Os12g0433500_circ_g.6 Os12g0433500_circ_g.7 Os12g0433500_circ_g.8 Os12g0433500_circ_g.9 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os12t0433500-01:19 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.229785939 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
14036064-14027538(+) 14036049-14027487(-) |
Potential amino acid sequence |
MFEFPQNLNCALGDNIFTEYVRVPH*(+) MIDSFETPQEFCVVTEFAQGELFEVLEDDKCLPEEQVQAIAKQLVKALHYLHSNRIIHRDMKPQ NILIGKGSVVKLCDFGFARAMSANTVVLRSIKGTPLYMAPELVREQPYNHTADLWSLGVILYEL FVGQPPFYTNSVYALIRHIVKDPVKYPENMSAHFKSFLKGLLNKSPQSRLTWPALLEHPFVKDD SVEPAADNGTVPYEVKGSEATWKADEIQTSRKQPPVTDPQSRNTVENREIVYDKQNNKKVEGPK HAAEDHHGSATGPGSDISILSECSALDKLEKTSQTVKGANAIIEDSEALSTALSPIKIWLSNTS TSPRELNIDDANQSLRIVKNLIEAGSYQSFAAIDDIICMFLECTSVIIKTKISDAYSFAVKCLA IGRKLLDTSEGPVLQSYDRHWSSLYELYSQILVSTIDPSGRISRESTACLALMLSRVISGLKTS ISSESPKPMEESLIKIINHARSSQLLELLCECLIASGSDIVSGSTNMVPAACEACKAIWYLAHA VDIMSLGTHNFSFPLANSWRQVHAKLDGKMQDQGSLPASQKKDSLSDIDSTHLINIFVKSFLAS KPMQVAVYHCLHNGLESAIHASLQLISRACLLDASFCAMICGPINPSSNVNEVEHGGDGTIVSD MFSLLSLCGSYLNKESKQNSNQKCRLSNPHALVVHCCLALATIAACLKSEGNSSASIILTSSQK KQRSRLSVLAHLSSVDDTVKSCLQPHCASAMLALSSLISLENGGQSRSSLCETALALFPRMATI HTLLKLWLSDGSEALCRYNAGLLNLFGLRDGCVGLLETRLKWGGPLAIEQACSVGIPQLLIRLL TDGFSKEPSDEKEGSIHRSGLSPLGVVWTLSALSQCLPGGVFREILYRREHVKLLTDLLSDTHL KALAAWTGLGGGKKGVRELINSVVDILAFPFVAVQSSPNMPSTSASINSGFLLSIASPGGRIGT ENKEMLKTIEKNMAQYIQVLLEVSVPGCILHCFDHVNMEDLSRPLAIVAKMVGYRPLASQLLRE GLLNHSRVEKLLKGPIAKETLLDFLMIVSDLARMSKDFYEPIDKAGMVGYLKNFLSNEDPDLRA KACSAIGNMCRHSSYFYSSLATNKVIELVVDRCSDPDKRTRKFACFAVGNAAYHNDMLYEELRR SIPQLTKLLLAPEEDKTKGNAAGALSNLVRNSNILCEDIVSQGAIQILRKLKHENIIEMIDSFE TPQEFCVVTEFAQGELFEVLEDDKCLPEEQVQAIAKQLVKALHYLHSNRIIHRDMKPQNILIGK GSVVKLCDFGFARAMSANTVVLRSIKGTPLYMAPELVREQPYNHTADLWSLGVILYELFVGQPP FYTNSVYALIRHIVKDPVKYPENMSAHFKSFLKGLLNKSPQSRLTWPALLEHPFVKDDSVEPAA DNGTVPYEVKGSEATWKADEIQTSRKQPPVTDPQSRNTVENREIVYDKQNNKKVEGPKHAAEDH HGSATGPGSDISILSECSALDKLEKTSQTVKGANAIIEDSEALSTALSPIKIWLSNTSTSPREL NIDDANQSLRIVKNLIEAGSYQSFAAIDDIICMFLECTSVIIKTKISDAYSFAVKCLAIGRKLL DTSEGPVLQSYDRHWSSLYELYSQILVSTIDPSGRISRESTACLALMLSRVISGLKTSISSESP KPMEESLIKIINHARSSQLLELLCECLIASGSDIVSGSTNMVPAACEACKAIWYLAHAVDIMSL GTHNFSFPLANSWRQVHAKLDGKMQDQGSLPASQKKDSLSDIDSTHLINIFVKSFLASKPMQVA VYHCLHNGLESAIHASLQLISRACLLDASFCAMICGPINPSSNVNEVEHGGDGTIVSDMFSLLS LCGSYLNKESKQNSNQKCRLSNPHALVVHCCLALATIAACLKSEGNSSASIILTSSQKKQRSRL SVLAHLSSVDDTVKSCLQPHCASAMLALSSLISLENGGQSRSSLCETALALFPRMATIHTLLKL WLSDGSEALCRYNAGLLNLFGLRDGCVGLLETRLKWGGPLAIEQACSVGIPQLLIRLLTDGFSK EPSDEKEGSIHRSGLSPLGVVWTLSALSQCLPGGVFREILYRREHVKLLTDLLSDTHLKALAAW TGLGGGKKGVRELINSVVDILAFPFVAVQSSPNMPSTSASINSGFLLSIASPGGRIGTENKEML KTIEKNMAQYIQVLLEVSVPGCILHCFDHVNMEDLSRPLAIVAKMVGYRPLASQLLREGLLNHS RVEKLLKGPIAKETLLDFLMIVSDLARMSKDFYEPIDKAGMVGYLKNFLSNEDPDLRAKACSAI GNMCRHSSYFYSSLATNKVIELVVDRCSDPDKRTRKFACFAVGNAAYHNDMLYEELRRSIPQLT KLLLAPEEDKTKGNAAGALSNLVRNSNILCEDIVSQGAIQILRKLKHENIIEMIDSFETPQEFC VVTEFAQGELFEVLEDDKCLPEEQVQAIAKQLVKALHYLHSNRIIHRDMKPQNILIGKGSVVKL CDFGFARAMSANTVVLRSIKGTPLYMAPELVREQPYNHTADLWSLGVILYELFVGQPPFYTNSV YALIRHIVKDPVKYPENMSAHFKSFLKGLLNKSPQSRLTWPALLEHPFVKDDSVEPAADNGTVP YEVKGSEATWKADEIQTSRKQPPVTDPQSRNTVENREIVYDKQNNKKVEGPKHAAEDHHGSATG PGSDISILSECSALDKLEKTSQTVKGANAIIEDSEALSTALSPIKIWLSNTSTSPRELNIDDAN QSLRIVKNLIEAGSYQSFAAIDDIICMFLECTSVIIKTKISDAYSFAVKCLAIGRKLLDTSEGP VLQSYDRHWSSLYELYSQILVSTIDPSGRISRESTACLALMLSRVISGLKTSISSESPKPMEES LIKIINHARSSQLLELLCECLIASGSDIVSGSTNMVPAACEACKAIWYLAHAVDIMSLGTHNFS FPLANSWRQVHAKLDGKMQDQGSLPASQKKDSLSDIDSTHLINIFVKSFLASKPMQVAVYHCLH NGLESAIHASLQLISRACLLDASFCAMICGPINPSSNVNEVEHGGDGTIVSDMFSLLSLCGSYL NKESKQNSNQKCRLSNPHALVVHCCLALATIAACLKSEGNSSASIILTSSQKKQRSRLSVLAHL SSVDDTVKSCLQPHCASAMLALSSLISLENGGQSRSSLCETALALFPRMATIHTLLKLWLSDGS EALCRYNAGLLNLFGLRDGCVGLLETRLKWGGPLAIEQACSVGIPQLLIRLLTDGFSKEPSDEK EGSIHRSGLSPLGVVWTLSALSQCLPGGVFREILYRREHVKLLTDLLSDTHLKALAAWTGLGGG KKGVRELINSVVDILAFPFVAVQSSPNMPSTSASINSGFLLSIASPGGRIGTENKEMLKTIEKN MAQYIQVLLEVSVPGCILHCFDHVNMEDLSRPLAIVAKMVGYRPLASQLLREGLLNHSRVEKLL KGPIAKETLLDFLMIVSDLARMSKDFYEPIDKAGMVGYLKNFLSNEDPDLRAKACSAIGNMCRH SSYFYSSLATNKVIELVVDRCSDPDKRTRKFACFAVGNAAYHNDMLYEELRRSIPQLTKLLLAP EEDKTKGNAAGALSNLVRNSNILCEDIVSQGAIQILRKLKHENIIEMIDSFETPQEFCVVTEFA QGELFEVLEDDKCLPEEQVQAIAKQLVKALHYLHSNRIIHRDMKPQNILIGKGSVVKLCDFGFA RAMSANTVVLRSIKGTPLYMAPELVREQPYNHTADLWSLGVILYELFVGQPPFYTNSVYALIRH IVKDPVKYPENMSAHFKSFLKGLLNKSPQSRLTWPALLEHPFVKDDSVEPAADNGTVPYEVKGS EATWKADEIQTSRKQPPVTDPQSRNTVENREIVYDKQNNKKVEGPKHAAEDHHGSATGPGSDIS ILSECSALDKLEKTSQTVKGANAIIEDSEALSTALSPIKIWLSNTSTSPRELNIDDANQSLRIV KNLIEAGSYQSFAAIDDIICMFLECTSVIIKTKISDAYSFAVKCLAIGRKLLDTSEGPVLQSYD RHWSSLYELYSQILVSTIDPSGRISRESTACLALMLSRVISGLKTSISSESPKPMEESLIKIIN HARSSQLLELLCECLIASGSDIVSGSTNMVPAACEACKAIWYLAHAVDIMSLGTHNFSFPLANS WRQVHAKLDGKMQDQGSLPASQKKDSLSDIDSTHLINIFVKSFLASKPMQVAVYHCLHNGLESA IHASLQLISRACLLDASFCAMICGPINPSSNVNEVEHGGDGTIVSDMFSLLSLCGSYLNKESKQ NSNQKCRLSNPHALVVHCCLALATIAACLKSEGNSSASIILTSSQKKQRSRLSVLAHLSSVDDT VKSCLQPHCASAMLALSSLISLENGGQSRSSLCETALALFPRMATIHTLLKLWLSDGSEALCRY NAGLLNLFGLRDGCVGLLETRLKWGGPLAIEQACSVGIPQLLIRLLTDGFSKEPSDEKEGSIHR SGLSPLGVVWTLSALSQCLPGGVFREILYRREHVKLLTDLLSDTHLKALAAWTGLGGGKKGVRE LINSVVDILAFPFVAVQSSPNMPSTSASINSGFLLSIASPGGRIGTENKEMLKTIEKNMAQYIQ VLLEVSVPGCILHCFDHVNMEDLSRPLAIVAKMVGYRPLASQLLREGLLNHSRVEKLLKGPIAK ETLLDFLMIVSDLARMSKDFYEPIDKAGMVGYLKNFLSNEDPDLRAKACSAIGNMCRHSSYFYS SLATNKVIELVVDRCSDPDKRTRKFACFAVGNAAYHNDMLYEELRRSIPQLTKLLLAPEEDKTK GNAAGALSNLVRNSNILCEDIVSQGAIQ(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Chu et al., 2017 |