Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os12g0433500_circ_g.3 |
| ID in PlantcircBase | osa_circ_011386 |
| Alias | NA |
| Organism | Oryza sativa |
| Position | chr12: 14027485-14036083 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | e-circRNA |
| Identification method | CIRCexplorer |
| Parent gene | Os12g0433500 |
| Parent gene annotation |
Similar to FU (FUSED); protein serine/threonine kinase. (Os12t04 33500-01) |
| Parent gene strand | - |
| Alternative splicing | Os12g0433500_circ_g.1 Os12g0433500_circ_g.2 Os12g0433500_circ_g.4 Os12g0433500_circ_g.5 Os12g0433500_circ_g.6 Os12g0433500_circ_g.7 Os12g0433500_circ_g.8 Os12g0433500_circ_g.9 |
| Support reads | 1 |
| Tissues | root |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Os12t0433500-01:19 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.229785939 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
14036064-14027538(+) 14036049-14027487(-) |
| Potential amino acid sequence |
MFEFPQNLNCALGDNIFTEYVRVPH*(+) MIDSFETPQEFCVVTEFAQGELFEVLEDDKCLPEEQVQAIAKQLVKALHYLHSNRIIHRDMKPQ NILIGKGSVVKLCDFGFARAMSANTVVLRSIKGTPLYMAPELVREQPYNHTADLWSLGVILYEL FVGQPPFYTNSVYALIRHIVKDPVKYPENMSAHFKSFLKGLLNKSPQSRLTWPALLEHPFVKDD SVEPAADNGTVPYEVKGSEATWKADEIQTSRKQPPVTDPQSRNTVENREIVYDKQNNKKVEGPK HAAEDHHGSATGPGSDISILSECSALDKLEKTSQTVKGANAIIEDSEALSTALSPIKIWLSNTS TSPRELNIDDANQSLRIVKNLIEAGSYQSFAAIDDIICMFLECTSVIIKTKISDAYSFAVKCLA IGRKLLDTSEGPVLQSYDRHWSSLYELYSQILVSTIDPSGRISRESTACLALMLSRVISGLKTS ISSESPKPMEESLIKIINHARSSQLLELLCECLIASGSDIVSGSTNMVPAACEACKAIWYLAHA VDIMSLGTHNFSFPLANSWRQVHAKLDGKMQDQGSLPASQKKDSLSDIDSTHLINIFVKSFLAS KPMQVAVYHCLHNGLESAIHASLQLISRACLLDASFCAMICGPINPSSNVNEVEHGGDGTIVSD MFSLLSLCGSYLNKESKQNSNQKCRLSNPHALVVHCCLALATIAACLKSEGNSSASIILTSSQK KQRSRLSVLAHLSSVDDTVKSCLQPHCASAMLALSSLISLENGGQSRSSLCETALALFPRMATI HTLLKLWLSDGSEALCRYNAGLLNLFGLRDGCVGLLETRLKWGGPLAIEQACSVGIPQLLIRLL TDGFSKEPSDEKEGSIHRSGLSPLGVVWTLSALSQCLPGGVFREILYRREHVKLLTDLLSDTHL KALAAWTGLGGGKKGVRELINSVVDILAFPFVAVQSSPNMPSTSASINSGFLLSIASPGGRIGT ENKEMLKTIEKNMAQYIQVLLEVSVPGCILHCFDHVNMEDLSRPLAIVAKMVGYRPLASQLLRE GLLNHSRVEKLLKGPIAKETLLDFLMIVSDLARMSKDFYEPIDKAGMVGYLKNFLSNEDPDLRA KACSAIGNMCRHSSYFYSSLATNKVIELVVDRCSDPDKRTRKFACFAVGNAAYHNDMLYEELRR SIPQLTKLLLAPEEDKTKGNAAGALSNLVRNSNILCEDIVSQGAIQILRKLKHENIIEMIDSFE TPQEFCVVTEFAQGELFEVLEDDKCLPEEQVQAIAKQLVKALHYLHSNRIIHRDMKPQNILIGK GSVVKLCDFGFARAMSANTVVLRSIKGTPLYMAPELVREQPYNHTADLWSLGVILYELFVGQPP FYTNSVYALIRHIVKDPVKYPENMSAHFKSFLKGLLNKSPQSRLTWPALLEHPFVKDDSVEPAA DNGTVPYEVKGSEATWKADEIQTSRKQPPVTDPQSRNTVENREIVYDKQNNKKVEGPKHAAEDH HGSATGPGSDISILSECSALDKLEKTSQTVKGANAIIEDSEALSTALSPIKIWLSNTSTSPREL NIDDANQSLRIVKNLIEAGSYQSFAAIDDIICMFLECTSVIIKTKISDAYSFAVKCLAIGRKLL DTSEGPVLQSYDRHWSSLYELYSQILVSTIDPSGRISRESTACLALMLSRVISGLKTSISSESP KPMEESLIKIINHARSSQLLELLCECLIASGSDIVSGSTNMVPAACEACKAIWYLAHAVDIMSL GTHNFSFPLANSWRQVHAKLDGKMQDQGSLPASQKKDSLSDIDSTHLINIFVKSFLASKPMQVA VYHCLHNGLESAIHASLQLISRACLLDASFCAMICGPINPSSNVNEVEHGGDGTIVSDMFSLLS LCGSYLNKESKQNSNQKCRLSNPHALVVHCCLALATIAACLKSEGNSSASIILTSSQKKQRSRL SVLAHLSSVDDTVKSCLQPHCASAMLALSSLISLENGGQSRSSLCETALALFPRMATIHTLLKL WLSDGSEALCRYNAGLLNLFGLRDGCVGLLETRLKWGGPLAIEQACSVGIPQLLIRLLTDGFSK EPSDEKEGSIHRSGLSPLGVVWTLSALSQCLPGGVFREILYRREHVKLLTDLLSDTHLKALAAW TGLGGGKKGVRELINSVVDILAFPFVAVQSSPNMPSTSASINSGFLLSIASPGGRIGTENKEML KTIEKNMAQYIQVLLEVSVPGCILHCFDHVNMEDLSRPLAIVAKMVGYRPLASQLLREGLLNHS RVEKLLKGPIAKETLLDFLMIVSDLARMSKDFYEPIDKAGMVGYLKNFLSNEDPDLRAKACSAI GNMCRHSSYFYSSLATNKVIELVVDRCSDPDKRTRKFACFAVGNAAYHNDMLYEELRRSIPQLT KLLLAPEEDKTKGNAAGALSNLVRNSNILCEDIVSQGAIQILRKLKHENIIEMIDSFETPQEFC VVTEFAQGELFEVLEDDKCLPEEQVQAIAKQLVKALHYLHSNRIIHRDMKPQNILIGKGSVVKL CDFGFARAMSANTVVLRSIKGTPLYMAPELVREQPYNHTADLWSLGVILYELFVGQPPFYTNSV YALIRHIVKDPVKYPENMSAHFKSFLKGLLNKSPQSRLTWPALLEHPFVKDDSVEPAADNGTVP YEVKGSEATWKADEIQTSRKQPPVTDPQSRNTVENREIVYDKQNNKKVEGPKHAAEDHHGSATG PGSDISILSECSALDKLEKTSQTVKGANAIIEDSEALSTALSPIKIWLSNTSTSPRELNIDDAN QSLRIVKNLIEAGSYQSFAAIDDIICMFLECTSVIIKTKISDAYSFAVKCLAIGRKLLDTSEGP VLQSYDRHWSSLYELYSQILVSTIDPSGRISRESTACLALMLSRVISGLKTSISSESPKPMEES LIKIINHARSSQLLELLCECLIASGSDIVSGSTNMVPAACEACKAIWYLAHAVDIMSLGTHNFS FPLANSWRQVHAKLDGKMQDQGSLPASQKKDSLSDIDSTHLINIFVKSFLASKPMQVAVYHCLH NGLESAIHASLQLISRACLLDASFCAMICGPINPSSNVNEVEHGGDGTIVSDMFSLLSLCGSYL NKESKQNSNQKCRLSNPHALVVHCCLALATIAACLKSEGNSSASIILTSSQKKQRSRLSVLAHL SSVDDTVKSCLQPHCASAMLALSSLISLENGGQSRSSLCETALALFPRMATIHTLLKLWLSDGS EALCRYNAGLLNLFGLRDGCVGLLETRLKWGGPLAIEQACSVGIPQLLIRLLTDGFSKEPSDEK EGSIHRSGLSPLGVVWTLSALSQCLPGGVFREILYRREHVKLLTDLLSDTHLKALAAWTGLGGG KKGVRELINSVVDILAFPFVAVQSSPNMPSTSASINSGFLLSIASPGGRIGTENKEMLKTIEKN MAQYIQVLLEVSVPGCILHCFDHVNMEDLSRPLAIVAKMVGYRPLASQLLREGLLNHSRVEKLL KGPIAKETLLDFLMIVSDLARMSKDFYEPIDKAGMVGYLKNFLSNEDPDLRAKACSAIGNMCRH SSYFYSSLATNKVIELVVDRCSDPDKRTRKFACFAVGNAAYHNDMLYEELRRSIPQLTKLLLAP EEDKTKGNAAGALSNLVRNSNILCEDIVSQGAIQILRKLKHENIIEMIDSFETPQEFCVVTEFA QGELFEVLEDDKCLPEEQVQAIAKQLVKALHYLHSNRIIHRDMKPQNILIGKGSVVKLCDFGFA RAMSANTVVLRSIKGTPLYMAPELVREQPYNHTADLWSLGVILYELFVGQPPFYTNSVYALIRH IVKDPVKYPENMSAHFKSFLKGLLNKSPQSRLTWPALLEHPFVKDDSVEPAADNGTVPYEVKGS EATWKADEIQTSRKQPPVTDPQSRNTVENREIVYDKQNNKKVEGPKHAAEDHHGSATGPGSDIS ILSECSALDKLEKTSQTVKGANAIIEDSEALSTALSPIKIWLSNTSTSPRELNIDDANQSLRIV KNLIEAGSYQSFAAIDDIICMFLECTSVIIKTKISDAYSFAVKCLAIGRKLLDTSEGPVLQSYD RHWSSLYELYSQILVSTIDPSGRISRESTACLALMLSRVISGLKTSISSESPKPMEESLIKIIN HARSSQLLELLCECLIASGSDIVSGSTNMVPAACEACKAIWYLAHAVDIMSLGTHNFSFPLANS WRQVHAKLDGKMQDQGSLPASQKKDSLSDIDSTHLINIFVKSFLASKPMQVAVYHCLHNGLESA IHASLQLISRACLLDASFCAMICGPINPSSNVNEVEHGGDGTIVSDMFSLLSLCGSYLNKESKQ NSNQKCRLSNPHALVVHCCLALATIAACLKSEGNSSASIILTSSQKKQRSRLSVLAHLSSVDDT VKSCLQPHCASAMLALSSLISLENGGQSRSSLCETALALFPRMATIHTLLKLWLSDGSEALCRY NAGLLNLFGLRDGCVGLLETRLKWGGPLAIEQACSVGIPQLLIRLLTDGFSKEPSDEKEGSIHR SGLSPLGVVWTLSALSQCLPGGVFREILYRREHVKLLTDLLSDTHLKALAAWTGLGGGKKGVRE LINSVVDILAFPFVAVQSSPNMPSTSASINSGFLLSIASPGGRIGTENKEMLKTIEKNMAQYIQ VLLEVSVPGCILHCFDHVNMEDLSRPLAIVAKMVGYRPLASQLLREGLLNHSRVEKLLKGPIAK ETLLDFLMIVSDLARMSKDFYEPIDKAGMVGYLKNFLSNEDPDLRAKACSAIGNMCRHSSYFYS SLATNKVIELVVDRCSDPDKRTRKFACFAVGNAAYHNDMLYEELRRSIPQLTKLLLAPEEDKTK GNAAGALSNLVRNSNILCEDIVSQGAIQ(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chu et al., 2017 |