Detail information of Os12g0433500_circ_g.3


General Information
CircRNA Name Os12g0433500_circ_g.3
ID in PlantcircBase osa_circ_011386
Alias NA
Organism Oryza sativa
Position chr12: 14027485-14036083  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os12g0433500
Parent gene annotation Similar to FU (FUSED); protein serine/threonine kinase. (Os12t04
33500-01)
Parent gene strand -
Alternative splicing Os12g0433500_circ_g.1 Os12g0433500_circ_g.2 Os12g0433500_circ_g.4 Os12g0433500_circ_g.5 Os12g0433500_circ_g.6 Os12g0433500_circ_g.7 Os12g0433500_circ_g.8 Os12g0433500_circ_g.9
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os12t0433500-01:19
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTGTACCTGAGCAAACTCTGTTACCACACAAAATTCCTGAGGGGTTTCAAATGAATCGATCAT
TTCGATTATATTCTCATGTTTGAGTTTCCTCAGAATctgaattgcgccctgggagacaatatct
tcacagagtatgttagagttcctcactaggttactcaacgctcctgcagcattgcccttggttt
tatcctcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.229785939
Functional Information
Coding potential Y
Potential coding position 14036064-14027538(+)
14036049-14027487(-)
Potential amino acid sequence MFEFPQNLNCALGDNIFTEYVRVPH*(+)
MIDSFETPQEFCVVTEFAQGELFEVLEDDKCLPEEQVQAIAKQLVKALHYLHSNRIIHRDMKPQ
NILIGKGSVVKLCDFGFARAMSANTVVLRSIKGTPLYMAPELVREQPYNHTADLWSLGVILYEL
FVGQPPFYTNSVYALIRHIVKDPVKYPENMSAHFKSFLKGLLNKSPQSRLTWPALLEHPFVKDD
SVEPAADNGTVPYEVKGSEATWKADEIQTSRKQPPVTDPQSRNTVENREIVYDKQNNKKVEGPK
HAAEDHHGSATGPGSDISILSECSALDKLEKTSQTVKGANAIIEDSEALSTALSPIKIWLSNTS
TSPRELNIDDANQSLRIVKNLIEAGSYQSFAAIDDIICMFLECTSVIIKTKISDAYSFAVKCLA
IGRKLLDTSEGPVLQSYDRHWSSLYELYSQILVSTIDPSGRISRESTACLALMLSRVISGLKTS
ISSESPKPMEESLIKIINHARSSQLLELLCECLIASGSDIVSGSTNMVPAACEACKAIWYLAHA
VDIMSLGTHNFSFPLANSWRQVHAKLDGKMQDQGSLPASQKKDSLSDIDSTHLINIFVKSFLAS
KPMQVAVYHCLHNGLESAIHASLQLISRACLLDASFCAMICGPINPSSNVNEVEHGGDGTIVSD
MFSLLSLCGSYLNKESKQNSNQKCRLSNPHALVVHCCLALATIAACLKSEGNSSASIILTSSQK
KQRSRLSVLAHLSSVDDTVKSCLQPHCASAMLALSSLISLENGGQSRSSLCETALALFPRMATI
HTLLKLWLSDGSEALCRYNAGLLNLFGLRDGCVGLLETRLKWGGPLAIEQACSVGIPQLLIRLL
TDGFSKEPSDEKEGSIHRSGLSPLGVVWTLSALSQCLPGGVFREILYRREHVKLLTDLLSDTHL
KALAAWTGLGGGKKGVRELINSVVDILAFPFVAVQSSPNMPSTSASINSGFLLSIASPGGRIGT
ENKEMLKTIEKNMAQYIQVLLEVSVPGCILHCFDHVNMEDLSRPLAIVAKMVGYRPLASQLLRE
GLLNHSRVEKLLKGPIAKETLLDFLMIVSDLARMSKDFYEPIDKAGMVGYLKNFLSNEDPDLRA
KACSAIGNMCRHSSYFYSSLATNKVIELVVDRCSDPDKRTRKFACFAVGNAAYHNDMLYEELRR
SIPQLTKLLLAPEEDKTKGNAAGALSNLVRNSNILCEDIVSQGAIQILRKLKHENIIEMIDSFE
TPQEFCVVTEFAQGELFEVLEDDKCLPEEQVQAIAKQLVKALHYLHSNRIIHRDMKPQNILIGK
GSVVKLCDFGFARAMSANTVVLRSIKGTPLYMAPELVREQPYNHTADLWSLGVILYELFVGQPP
FYTNSVYALIRHIVKDPVKYPENMSAHFKSFLKGLLNKSPQSRLTWPALLEHPFVKDDSVEPAA
DNGTVPYEVKGSEATWKADEIQTSRKQPPVTDPQSRNTVENREIVYDKQNNKKVEGPKHAAEDH
HGSATGPGSDISILSECSALDKLEKTSQTVKGANAIIEDSEALSTALSPIKIWLSNTSTSPREL
NIDDANQSLRIVKNLIEAGSYQSFAAIDDIICMFLECTSVIIKTKISDAYSFAVKCLAIGRKLL
DTSEGPVLQSYDRHWSSLYELYSQILVSTIDPSGRISRESTACLALMLSRVISGLKTSISSESP
KPMEESLIKIINHARSSQLLELLCECLIASGSDIVSGSTNMVPAACEACKAIWYLAHAVDIMSL
GTHNFSFPLANSWRQVHAKLDGKMQDQGSLPASQKKDSLSDIDSTHLINIFVKSFLASKPMQVA
VYHCLHNGLESAIHASLQLISRACLLDASFCAMICGPINPSSNVNEVEHGGDGTIVSDMFSLLS
LCGSYLNKESKQNSNQKCRLSNPHALVVHCCLALATIAACLKSEGNSSASIILTSSQKKQRSRL
SVLAHLSSVDDTVKSCLQPHCASAMLALSSLISLENGGQSRSSLCETALALFPRMATIHTLLKL
WLSDGSEALCRYNAGLLNLFGLRDGCVGLLETRLKWGGPLAIEQACSVGIPQLLIRLLTDGFSK
EPSDEKEGSIHRSGLSPLGVVWTLSALSQCLPGGVFREILYRREHVKLLTDLLSDTHLKALAAW
TGLGGGKKGVRELINSVVDILAFPFVAVQSSPNMPSTSASINSGFLLSIASPGGRIGTENKEML
KTIEKNMAQYIQVLLEVSVPGCILHCFDHVNMEDLSRPLAIVAKMVGYRPLASQLLREGLLNHS
RVEKLLKGPIAKETLLDFLMIVSDLARMSKDFYEPIDKAGMVGYLKNFLSNEDPDLRAKACSAI
GNMCRHSSYFYSSLATNKVIELVVDRCSDPDKRTRKFACFAVGNAAYHNDMLYEELRRSIPQLT
KLLLAPEEDKTKGNAAGALSNLVRNSNILCEDIVSQGAIQILRKLKHENIIEMIDSFETPQEFC
VVTEFAQGELFEVLEDDKCLPEEQVQAIAKQLVKALHYLHSNRIIHRDMKPQNILIGKGSVVKL
CDFGFARAMSANTVVLRSIKGTPLYMAPELVREQPYNHTADLWSLGVILYELFVGQPPFYTNSV
YALIRHIVKDPVKYPENMSAHFKSFLKGLLNKSPQSRLTWPALLEHPFVKDDSVEPAADNGTVP
YEVKGSEATWKADEIQTSRKQPPVTDPQSRNTVENREIVYDKQNNKKVEGPKHAAEDHHGSATG
PGSDISILSECSALDKLEKTSQTVKGANAIIEDSEALSTALSPIKIWLSNTSTSPRELNIDDAN
QSLRIVKNLIEAGSYQSFAAIDDIICMFLECTSVIIKTKISDAYSFAVKCLAIGRKLLDTSEGP
VLQSYDRHWSSLYELYSQILVSTIDPSGRISRESTACLALMLSRVISGLKTSISSESPKPMEES
LIKIINHARSSQLLELLCECLIASGSDIVSGSTNMVPAACEACKAIWYLAHAVDIMSLGTHNFS
FPLANSWRQVHAKLDGKMQDQGSLPASQKKDSLSDIDSTHLINIFVKSFLASKPMQVAVYHCLH
NGLESAIHASLQLISRACLLDASFCAMICGPINPSSNVNEVEHGGDGTIVSDMFSLLSLCGSYL
NKESKQNSNQKCRLSNPHALVVHCCLALATIAACLKSEGNSSASIILTSSQKKQRSRLSVLAHL
SSVDDTVKSCLQPHCASAMLALSSLISLENGGQSRSSLCETALALFPRMATIHTLLKLWLSDGS
EALCRYNAGLLNLFGLRDGCVGLLETRLKWGGPLAIEQACSVGIPQLLIRLLTDGFSKEPSDEK
EGSIHRSGLSPLGVVWTLSALSQCLPGGVFREILYRREHVKLLTDLLSDTHLKALAAWTGLGGG
KKGVRELINSVVDILAFPFVAVQSSPNMPSTSASINSGFLLSIASPGGRIGTENKEMLKTIEKN
MAQYIQVLLEVSVPGCILHCFDHVNMEDLSRPLAIVAKMVGYRPLASQLLREGLLNHSRVEKLL
KGPIAKETLLDFLMIVSDLARMSKDFYEPIDKAGMVGYLKNFLSNEDPDLRAKACSAIGNMCRH
SSYFYSSLATNKVIELVVDRCSDPDKRTRKFACFAVGNAAYHNDMLYEELRRSIPQLTKLLLAP
EEDKTKGNAAGALSNLVRNSNILCEDIVSQGAIQILRKLKHENIIEMIDSFETPQEFCVVTEFA
QGELFEVLEDDKCLPEEQVQAIAKQLVKALHYLHSNRIIHRDMKPQNILIGKGSVVKLCDFGFA
RAMSANTVVLRSIKGTPLYMAPELVREQPYNHTADLWSLGVILYELFVGQPPFYTNSVYALIRH
IVKDPVKYPENMSAHFKSFLKGLLNKSPQSRLTWPALLEHPFVKDDSVEPAADNGTVPYEVKGS
EATWKADEIQTSRKQPPVTDPQSRNTVENREIVYDKQNNKKVEGPKHAAEDHHGSATGPGSDIS
ILSECSALDKLEKTSQTVKGANAIIEDSEALSTALSPIKIWLSNTSTSPRELNIDDANQSLRIV
KNLIEAGSYQSFAAIDDIICMFLECTSVIIKTKISDAYSFAVKCLAIGRKLLDTSEGPVLQSYD
RHWSSLYELYSQILVSTIDPSGRISRESTACLALMLSRVISGLKTSISSESPKPMEESLIKIIN
HARSSQLLELLCECLIASGSDIVSGSTNMVPAACEACKAIWYLAHAVDIMSLGTHNFSFPLANS
WRQVHAKLDGKMQDQGSLPASQKKDSLSDIDSTHLINIFVKSFLASKPMQVAVYHCLHNGLESA
IHASLQLISRACLLDASFCAMICGPINPSSNVNEVEHGGDGTIVSDMFSLLSLCGSYLNKESKQ
NSNQKCRLSNPHALVVHCCLALATIAACLKSEGNSSASIILTSSQKKQRSRLSVLAHLSSVDDT
VKSCLQPHCASAMLALSSLISLENGGQSRSSLCETALALFPRMATIHTLLKLWLSDGSEALCRY
NAGLLNLFGLRDGCVGLLETRLKWGGPLAIEQACSVGIPQLLIRLLTDGFSKEPSDEKEGSIHR
SGLSPLGVVWTLSALSQCLPGGVFREILYRREHVKLLTDLLSDTHLKALAAWTGLGGGKKGVRE
LINSVVDILAFPFVAVQSSPNMPSTSASINSGFLLSIASPGGRIGTENKEMLKTIEKNMAQYIQ
VLLEVSVPGCILHCFDHVNMEDLSRPLAIVAKMVGYRPLASQLLREGLLNHSRVEKLLKGPIAK
ETLLDFLMIVSDLARMSKDFYEPIDKAGMVGYLKNFLSNEDPDLRAKACSAIGNMCRHSSYFYS
SLATNKVIELVVDRCSDPDKRTRKFACFAVGNAAYHNDMLYEELRRSIPQLTKLLLAPEEDKTK
GNAAGALSNLVRNSNILCEDIVSQGAIQ(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017