Detail information of BGIOSGA033350_circ_igg.1


General Information
CircRNA Name BGIOSGA033350_circ_igg.1
ID in PlantcircBase osi_circ_008643
Alias Chr10:22623355_22623793(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 19736980-19737418  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-AA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGATTTTGAGCAACCATCCTTTACTGAAGAACATATAAAAGAACTCATCTGGAGGGAATCCTT
GGCATTTAATCCGGATCCTCCCTACTAAGAGCTCAGgctgatagggtcgccagatgactcaagc
ctagggtttcttcggagtgataatgcaagaagatacatgaaacagctaccacagtacccaaggc
aggacttc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCTGATAGGGTCGCCAGATGACTCAAGCCTAGGGTTTCTTCGGAGTGATAATGCAAGAAGATAC
ATGAAACAGCTACCACAGTACCCAAGGCAGGACTTCCGCTTGCGCTTCCGCAACATGTCTGCTG
GTGCAGTCGATCTGTTAGAGAAAATGCTGGTGTTTGACCCAAGCAGACGGATAACTGGTACATT
GACTTTACACCAACTACTCCACTTTTGTTGCCTTTACTGTAAATTGAACATTATTTTTCCATGC
AGTTGATGAGGCTCTTCATCACCCATACTTGGCTTCTCTTCATGACATCAATGAAGAACCCACC
TGCCCAGCACCTTTCAGCTTTGATTTTGAGCAACCATCCTTTACTGAAGAACATATAAAAGAAC
TCATCTGGAGGGAATCCTTGGCATTTAATCCGGATCCTCCCTACTAAGAGCTCAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021