Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os01g0120300_circ_g.1 |
ID in PlantcircBase | osa_circ_000152 |
Alias | NA |
Organism | Oryza sativa |
Position | chr1: 1146480-1148794 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os01g0120300 |
Parent gene annotation |
Similar to EMB2369 (EMBRYO DEFECTIVE 2369); ATP binding / aminoa cyl-tRNA ligase/ leucine-tRNA ligase/ nucleotide binding. (Os01t 0120300-00) |
Parent gene strand | - |
Alternative splicing | Os01g0120300_circ_g.2 Os01g0120300_circ_g.3 Os01g0120300_circ_g.4 Os01g0120300_circ_g.5 |
Support reads | 1 |
Tissues | shoot |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os01t0120300-00:6 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.170614579 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
1148371-1146482(-) 1147500-1148775(-) |
Potential amino acid sequence |
MSKSRGNVINPDDVVSEYGADSLRLYEMFMGPLRDSKTWSTGGIEGVHRFLGRTWRLVVGTPLP DGSYGVGTTVTDEEPTLDQLRVLHKCIARVTEEIQETRFNTAISAMMEFVNAAYKWDTQPKSVI ESFILLLSPFAPHMAEELWFRLGNSRSLAHEQFPEVLYDIGVVSTKEPFKCLINQGLILGEVEY TAYRDNKGRWVSADSNSSLIDCYQEKVPADKVTKVGDHYVLKDDANIRLNARAYKMSKSRGNVI NPDDVVSEYGADSLRLYEMFMGPLRDSKTWSTGGIEGVHRFLGRTWRLVVGTPLPDGSYGVGTT VTDEEPTLDQLRVLHKCIARVTEEIQETRFNTAISAMMEFVNAAYKWDTQPKSVIESFILLLSP FAPHMAEELWFRLGNSRSLAHEQFPEVLYDIGVVSTKEPFKCLINQGLILGEVEYTAYRDNKGR WVSADSNSSLIDCYQEKVPADKVTKVGDHYVLKDDANIRLNARAYKMSKSRGNVINPDDVVSEY GADSLRLYEMFMGPLRDSKTWSTGGIEGVHRFLGRTWRLVVGTPLPDGSYGVGTTVTDEEPTLD QLRVLHKCIARVTEEIQETRFNTAISAMMEFVNAAYKWDTQPKSVIESFILLLSPFAPHMAEEL WFRLGNSRSLAHEQFPEVLYDIGVVSTKEPFKCLINQGLILGEVEYTAYRDNKGRWVSADSNSS LIDCYQEKVPADKVTKVGDHYVLKDDANIRLNARAYKMSKSRGNVINPDDVVSEYGADSLRLYE MFMGPLRDSKTWSTGGIEGVHRFLGRTWRLVVGTPLPDGSYGVGTTVTDEEPTLDQLRVLHKCI ARVTEEIQETRFNTAISAMMEFVNAAYKWDTQPKSVIESFILLLSPFAPHMAEELWFRLGNSRS LAHEQFPE(-) MLHTSGTPNQSQLLNPLFCCFRLLHHTWLRSFGFALGTQDHWPTSNFQRFFMILA*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |