Detail information of Os01g0120300_circ_g.1


General Information
CircRNA Name Os01g0120300_circ_g.1
ID in PlantcircBase osa_circ_000152
Alias NA
Organism Oryza sativa
Position chr1: 1146480-1148794  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os01g0120300
Parent gene annotation Similar to EMB2369 (EMBRYO DEFECTIVE 2369); ATP binding / aminoa
cyl-tRNA ligase/ leucine-tRNA ligase/ nucleotide binding. (Os01t
0120300-00)
Parent gene strand -
Alternative splicing Os01g0120300_circ_g.2 Os01g0120300_circ_g.3 Os01g0120300_circ_g.4 Os01g0120300_circ_g.5
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os01t0120300-00:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGAGGTAATTAGTTTCACCTACTTCTCCTAGAATCAATCCTTGATTTATCAGGCACTTGAAGGG
CTCTTTAGTGGAAACTACGCCAATATCATAAAGAACctctggaaattgctcgtgggccaatgat
cttgagttcccaaggcgaaaccaaagctcctcagccatgtgtggtgcaaaaggcgaaagcaaca
gaataaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCTGGAAATTGCTCGTGGGCCAATGATCTTGAGTTCCCAAGGCGAAACCAAAGCTCCTCAGCC
ATGTGTGGTGCAAAAGGCGAAAGCAACAGAATAAAGGATTCAATAACTGACTTTGGTTGGGTGT
CCCACTGTAAGAAGAAAGCACAATGAGAGAAGTAAAAAAACACGTCTACCAGAGTACAGGTTTT
GTTGCCAATGCCATGTTAAACTGATCTCATCTTCCATTCTTTTGCACTTCAATTTGAATACTCA
AGACATCCTATTGGGTTTTACTGACATCAGGTTTATAAATTGCAAGAGGTTCTGTGCCAATTTA
CCAAGTGCTAAGCAGAAAATGAAGAAGTACAGGCACAAAAGTTCTTAAGCACATTTTAAGCCTT
GCTGCACGAAAGCACATATATAAGCTTGCTTGGATTTGAATAACTGCAGTACAAACACCAGCTC
CATATTCCTGCCTTAGGCTGTATTCTTTTCCCCTCTTTCCCAACTCATTTCCCTCGTTTTCCGC
GCGCACGCTTTTGAAAATGCTAAATAGTGTATTTTTTGCAAAAGTTTTCTATATGAAAGTTGCT
TTAAAAATCATATTAATCCATTTTTCAAGTTTTTTTAGGTTAGTACTTAATTAATCTCACCATA
ATCGTGTGCTTCGTTTTCCGTGTCAGTTGGGAACCTTGCCTCCTGAATACAACCTAATCATTGA
CTAGCGATGATATAACAATGGAGACATACGGTAAAATAATCCGAGCAAAATATTTTGGAAATTC
CAGGCAAATAACTTGAATTTTAACAAAGCAGACACATTTTTTAAACTTATGTTCATATGGGAAC
AGTGTATACAAAACATTATGCTGGTTATTTAATAGCAAAGTCATCTGGCATGGAACTTAAATAG
ATAATGTGTAGGCAACTACAAAATGGATATGCAATAAAATTATATAAATGACGGCAACAACTTC
ATTTAAAAGTATGAAACTATGCATGTAAACATTACTTAAGGTTACCTTGTATGCAGCATTCACA
AATTCCATCATTGCAGAAATTGCAGTGTTAAATCTTGTTTCTTGAATTTCCTCTGTGACCTATA
AAACATAACAATACATTATAGTCATCAATCACCAATCACATCAGCACAACTACAGGAAAAAAAT
TATCAGTGCATAATCATGTTTAGCAGTAAGGAGACCCTGAGAATTGTGTGATGATACAATCTTG
AAATAGTCAGTACATAGGCAAAGCTTTTCACAGGGTAACTGATAGGGGAACAGTTGCAAAGTAC
CATTACAACTAATCCATCTCAATATTGGAAGCATAAAAGGTACAAAAATAATTGAAATGGTGGC
ACAGGCTGTAAAATTAATTAATAGAATTTATATTCCCCAAAGGGCATGTCATGTATAGGAATTA
TGTGCCGGGAACTTGGTAAAACTGTACAAATTTCCAAACCAAACTGCTAGTAAACCTAAAATTT
TGAATGGCTTTCATTTCAGAGTGAATTAGTGAAAAGATGTTATGTGATCATGCTGTCAACTGTG
ACGTACTCTTGCAATGCATTTGTGAAGAACTCGGAGCTGATCCAAGGTTGGTTCCTCATCAGTA
ACCGTAGTTCCAACTCCATATGATCCATCTGGTAATGGTGTACCAACTACGAGTCTCCATGTCC
TTCCTAGAAATCTATGCACACCTTCAATTCCACCAGTGCTCCATGTTTTTGAATCTCTGTGTAC
ATCAGATATTCTGTCAGCTTTCTAAAATGGCTGTAACTTCATCTGTAATATGGATGCATACCTC
AGTGGTCCCATGAACATTTCATATAAGCGGAGAGAATCAGCACCATATTCTGAAACCACGTCAT
CTGGGTTGATGACATTTCCTCGACTTTTACTCATTTTATAAGCACGAGCGTTTAGACGTATGTT
TGCATCATCCTTCAGTACATAATGATCTCCAACTTTTGTGACCTTTAAAAACATAGAAGAAAGA
AAAAAAATCAAACTAAAAAACTTTTATCATGCCAATTGAATAAAGTTATAAATGTACCAGAGCC
CACCTTATCTGCAGGTACTTTTTCTTGGTAGCAATCAATCAAACTTGAGTTGGAATCTGCAGAA
ACCCATCTCCCTTTATTGTCTCTATATGCAGTATATTCAACCTGTTATGATATTACCTGTTAGG
AACACATGCACAAGATAGTAACGAACATGGGCAACTTTTGGAGGTAATTAGTTTCACCTACTTC
TCCTAGAATCAATCCTTGATTTATCAGGCACTTGAAGGGCTCTTTAGTGGAAACTACGCCAATA
TCATAAAGAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.170614579
Functional Information
Coding potential Y
Potential coding position 1148371-1146482(-)
1147500-1148775(-)
Potential amino acid sequence MSKSRGNVINPDDVVSEYGADSLRLYEMFMGPLRDSKTWSTGGIEGVHRFLGRTWRLVVGTPLP
DGSYGVGTTVTDEEPTLDQLRVLHKCIARVTEEIQETRFNTAISAMMEFVNAAYKWDTQPKSVI
ESFILLLSPFAPHMAEELWFRLGNSRSLAHEQFPEVLYDIGVVSTKEPFKCLINQGLILGEVEY
TAYRDNKGRWVSADSNSSLIDCYQEKVPADKVTKVGDHYVLKDDANIRLNARAYKMSKSRGNVI
NPDDVVSEYGADSLRLYEMFMGPLRDSKTWSTGGIEGVHRFLGRTWRLVVGTPLPDGSYGVGTT
VTDEEPTLDQLRVLHKCIARVTEEIQETRFNTAISAMMEFVNAAYKWDTQPKSVIESFILLLSP
FAPHMAEELWFRLGNSRSLAHEQFPEVLYDIGVVSTKEPFKCLINQGLILGEVEYTAYRDNKGR
WVSADSNSSLIDCYQEKVPADKVTKVGDHYVLKDDANIRLNARAYKMSKSRGNVINPDDVVSEY
GADSLRLYEMFMGPLRDSKTWSTGGIEGVHRFLGRTWRLVVGTPLPDGSYGVGTTVTDEEPTLD
QLRVLHKCIARVTEEIQETRFNTAISAMMEFVNAAYKWDTQPKSVIESFILLLSPFAPHMAEEL
WFRLGNSRSLAHEQFPEVLYDIGVVSTKEPFKCLINQGLILGEVEYTAYRDNKGRWVSADSNSS
LIDCYQEKVPADKVTKVGDHYVLKDDANIRLNARAYKMSKSRGNVINPDDVVSEYGADSLRLYE
MFMGPLRDSKTWSTGGIEGVHRFLGRTWRLVVGTPLPDGSYGVGTTVTDEEPTLDQLRVLHKCI
ARVTEEIQETRFNTAISAMMEFVNAAYKWDTQPKSVIESFILLLSPFAPHMAEELWFRLGNSRS
LAHEQFPE(-)
MLHTSGTPNQSQLLNPLFCCFRLLHHTWLRSFGFALGTQDHWPTSNFQRFFMILA*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017