Detail information of AT2G03340_circ_g.1


General Information
CircRNA Name AT2G03340_circ_g.1
ID in PlantcircBase ath_circ_012670
Alias Ath_circ_FC1152
Organism Arabidpsis thaliana
Position chr2: 1014529-1014684  JBrowse»
Reference genome TAIR10.38
Type   u-circRNA
Identification method find_circ
Parent gene AT2G03340
Parent gene annotation Putative WRKY DNA-binding protein
Parent gene strand -
Alternative splicing NA
Support reads 2
Tissues whole_plant
Exon boundary   No-No
Splicing signals   CT-TA
Number of exons covered AT2G03340.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGATTCTGTCCAGAGAAACCTGTGGTGTTTTGAGGCAACAAAAACAGGTTCATTAACCAAAAA
GAAGATTCATTAAAcctcctaaagcttcttaagattacacagaagattccaacatgaaataaaa
gaacataccttttgaaactgtaatatca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCCTAAAGCTTCTTAAGATTACACAGAAGATTCCAACATGAAATAAAAGAACATACCTTTTG
AAACTGTAATATCAGAGATTCTGTCCAGAGAAACCTGTGGTGTTTTGAGGCAACAAAAACAGGT
TCATTAACCAAAAAGAAGATTCATTAAA
Conservation Information
Conserved circRNAs NA
PMCS 0.138354696
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017a