Detail information of Zm00001d019892_circ_g.1


General Information
CircRNA Name Zm00001d019892_circ_g.1
ID in PlantcircBase zma_circ_002498
Alias circ1573
Organism Zea mays
Position chr7: 73398986-73403596  JBrowse»
Reference genome AGPv4.38
Type   ui-circRNA
Identification method CIRCexplor2
Parent gene Zm00001d019892
Parent gene annotation FRIGIDA-like protein 3
Parent gene strand -
Alternative splicing Zm00001d019892_circ_g.2 Zm00001d019892_circ_g.3
Support reads 2
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered Zm00001d019890_T001:2
Zm00001d019892_T001:2
Zm00001d019892_T002:2
Zm00001d019890_T001:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTCTCAAGCTCAGCGAATGCCTCCTGAAGCTGTTGTATCTTGGAGCTTGTCGAGTCCATAAGAG
CCGCGACAGACTCCATTTCAGACATGGCGAACGCTCcctgtgctccaggagaagttttgacatt
cctggcgtgtgacattttcttaacatcccttagatatgctttaagaaggtgtactggttcaaat
tgttcagt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGTGCTCCAGGAGAAGTTTTGACATTCCTGGCGTGTGACATTTTCTTAACATCCCTTAGATA
TGCTTTAAGAAGGTGTACTGGTTCAAATTGTTCAGTAAGCTCAAACACATAAGCCAAATTAATT
GCATCAATAGGTCTTCCACTTTCCACCAGAACTTCAATGACACCTGATTTCAAGAATATGCATT
AATAAATCACTTATTCTTCAAGGAGAAAATATTCTAATTTGTGAAAAATAAAACAAAATAAAAT
ATAGAAGGGTAAAATCACAGAGAAAAAAAGGAAAAATAGAAGAAAAAGGGAAATCCTAACAACA
TGAAAAAACCCATGGTGAATACATTGTTAAGAACTATGATGCACTCACACTTCACTTTGTCAGA
TGCTGCATTGGACACCAATATGGTGCCAACACAGATCTATGAACTTTCGAATAATTAAAGCCCC
AAAAAAAGTAATTTTATTAATAGAAACTTCAGCAACATGACCAGCTTGACAAGCAACCCCTCCT
CCATGGACAACCCTGGTCCCCACACCTCATTACACTCTCCCCTTATTCAACTGCACCTGCAGGT
CAACACCATTGCTTCTCTGGTCTCTCTAGCTTGATTCAAGAACTCCCCTCGTACCGACGCAAGA
ATGCTGCTCCTCCACGATTTGGCTTGGCCCCTTGATTCCTTGCAGAAAACTAGATGTCCGACTA
ATAGATGACTAATCATGATTATTTGTCCGATCAGGCCATCTGGACGACTAGTTGGGTGAGCCCA
AGAAATTTGTATGGTGGATTGGTCAACCCTGAGCTGGCAAATTAGGTTTATAGTGTTCCTGTTT
GTGTGTGTATATATTGCTGTGAAGAGGAGGGGAGGAGCAGCAGGTGCTGTTTTTCCACCGCTAA
TCGACCACAATGGACGCTTAATCGTGATTAGTCATTTGATCAGTGGTCTTACAACTAGCCCCGA
ACATACGATCTGATAACAATAATGTGAAGTGGAGATGTAAGTTCAGAATAACTAGTTACACTAG
AGCCAGAGCGGTGAAAATCAGTCATCAGGGAATCAATCTATATCATGAGGCCGTAAGGTGACAA
TATGTATTCTTCTCAACTCAAAGCTTAAGCTAGGGCTGACACAAAAATAAAATGGAAGGTGTCA
TTGTCATGCGCTGCTAAGTTCTTCCAGACCTCCTGGTAGTGTTGACTCATCAAGCATGGTCAAT
GAGGAAGCACAGAGCAGAAATGTCACCACTAGAAAAAATTAGACCATGGATAAACATAAACAGG
ATGCTATAATCCAGAGAATGTTTTATTCAGGAGGTTCTTGACTTCATTCATTGTTTTAATTTTA
TACAGCTGACCACAAAATTCACCTAATTTGTGTTCTGTATATTTAGTTATTTTTTCAATGTTGC
AGGAAATGCACACTACAGTACTACACTATCAATATCAAGAGCCATATACATTTTGCCCGAATTT
TTTGCAATTTAACACTTTTTCAAAAAAATGATTGGACATTTGGATGACTTAATGTCGTTTTTGG
ACCCTTTGCTCGACGCCATAGGCCATGACGCCGGGATAGCGATAAGGTCGGACTGCTACTGGTC
CTGTACCTGGAAGTAGCTTGATGCGATGATCATGGTGTCATGGTGGAGGAAGGCCCTGAGGTTC
ATTAAAGAGGCTGGAAAAAGACGCCAACAATGCCTCGAGCAGCTGGTGTGCACTGTCAATGGAG
GAGCAGCAAGGTGCAGCACCCCCGATGCCAGTCCAGTGCACCAACCGTCCATCCCGCCAAAACG
CCATAGTGAGCTTGTCATAGTTGCAGACAATGGGCCTAATGAACATAACCATTCTACCCCTAGC
ACTACATCAAAGCCATCCAGGGGTAGAGAGTAGCATGTAGTCTTGAAATCTTCATTGCCGATGA
TGATTAGAGTACTGGAACAGATTCCTCCACTCATAACCTTGTCCCCATTAGCAACTTTGACCAA
TATGCCCACTGTTGGAGTCATGTTCAACCCAAGACTTGAGACTACTGCGTCACGGATGAAAGAA
TGTGTTGATCCGGAGTCTACCAGAGCGATCAAGGGAACACCATTGATGGAGATGTGCAGTTTCA
GAGTATCAGCAACCTCTATGTCTGTAAGAGCGTGAAGGGAGATTCCCAATTCTTGAATGATAGT
GTCCTCTGTCTCTGACATGGCCTTCCGGGCCGGATCCGCCGCTACCCTGCTATTCTGTCGCGGA
CGAGGCCACCATGACCGGCGCAGACGCGTGCGCTACCGTCGGCCTCCCTGGCAGGCCTCCTCGA
CATCCGGACAATCAAAGAAGCAAGAAGGTCGGTCTGCTGGTGCTCTTTTGTTGTGTTGCCCCGC
CGACCGTTGACGCTCGAACGTCGACCCCTCCCAAAGAACAGGCTATTGCTGCGTGTCTCCCGAC
CACAACCACCTCGACTTCGACTACCTCGGCATCCAGGGGCTATCATCTTCTCAAAGTCCACACC
GGTCTCTACTCCAACCGCAGCATTCGCACCCTCACGACGCTGCGACTGCAGGGGGATATCAACC
CGTCGGCTCCTACCTTCGGCTTTTACTCCAGTATCATCGTGTGCGGTGCTTCGTTGCGACTGCA
GGGGGATGTTAGACTTGATGGAATAAGTCTTGAGCATCTAGAGGACAGCCTGCTTTTGACTGTC
CTATGTAGTCTTTTAGCATCTAGAGGACAGCAGTCGCTTTTTGACTGTCCTCTGTAGTCTCTTT
AGCATCTAGAGGACAACAGTCGCTTTTTGACTGTCCTCTGTAGTCGCTTTAGCATCTAGAGGAC
AGCAGTCGCTTTTTGACTGTCCTCTGTAGTCTCTTTAGCATCTAGAGGACAATCCTGTTGTGTA
GTGTGTGTGAGAAGGTGTGGTAGTGCAGCCCCTAGGGCTATAAATATGTGTCCCCAACCCCTCT
AAGGGTATGGCATTGTGTAGTGTTTGAGGAAATAAACAGAAAATTGCCCCAACTCATAGTGTCA
TCCTCTTGATGAGAGTTAGAATCCCTCTACTTACAAGACTGTGGGGGGCACCACTGTTGAGCTA
TCGACTCATTAGGGTTAGGGTTCTGTGTCTATATGTAACCACCACCTCTATGCAATACAATCAA
ACCATTCCATTCTCCAACACATGTGCCTAAACCTTGACTTGTGGTTTTTGTTGTGTTTTAACTC
TAGCCTACCCCAACTTGCTTGGGACAAAAAGGCTTTGTTGTTGTTGTTGAAAAGACTAGCATCG
TTAACTAAGTTTAGCAGGCAGAAGTGAAATTATATTTCCTATATTGAAAATACGTGAATTGTAA
TGCACTTTTTTTGTGGGGAAGCGGGGGGATCTTGCCCCCTTCCTTCTAACAACTATTCACAACA
TCCACTAACAAGCAAACAAGAAAGTAAAAACTACATAGAAATTGACAGCCACCAAAGTAACATA
AGTGCAAAAACATGTCCTATGAATATTTGTCAAGCATTTTAATAAGCTGAAAGAATACAGGTTT
TTCACAGATGTTCAATGTTGTTTGAGATAGATAAACCATTAGTCCACCACAGCACTGACCTGGC
ATTTTCTGCGACAACCCAAGCAATCGACAAAGTTCAGGTGTCTGACGACGACGACTGACATATG
GAAGCAATTTGCACAAGTCATCTTCATTGAATTCAGCAGAAATACCAAAGGTTGCCAGGAGTTG
AAGAAACGCATGAGCTTCAAGACAGTTCCCATTGCTAGCATCAATGTCAAGATTATCTAACTTG
GACTTCCACTTAAATGCAATCGTCTTTGCTCGCTCTATGATATTAGTTGTAAGCATGTGCCTCT
CCAAAGAAGAACAAGTTATATCATTAGAGTGCAGTTGTCCAAGTGACTCCATCAACATCAAACA
TGTCCTTCTAACACCCAGAAGGTCACCATCCTTTTTTCCATCTAATACAAGATTATCTCCAGAA
TAAAAGTCTTCCAGGGAATCCAACACCAGGCCATAAGGATGAGATGTTTTCTTCAGTGCACTAG
GAATTTCCTCGCGGATGGCTGCCAAGTTCTTCCTGTTGTCGGATATGAACTTATGAAGCCCGTT
CACATTCATTTCCTCACAGAGTGCAACAAGCTCAGAACGAGGCCTCACTGCAGCATTATCAACT
TGCAAGTGCACACTCTCCTCAGAAGCCGGTTTAGGCCACTTGACACCAAGATTATCCAGTGCCT
TGTTCATTGGGTTGATGGAAGGAACAGGTAAGGAAAGCCTGGACTTGCTAAAGATCATAGCTAA
TGCAGCTTCCCTCTTCTCCTGCAACCTCTCCAAAGAGGTCAGTTCCTTGGCCACAACAGCTGCC
TCCCGCTGCTCCAGCATCTGCTCTGATTTTGCGACAGTCTCCTGGAACTCCTTCTCCTGCTCTT
TTAGCTCGTCAAACTTTTTCTTGAGGGATTGTTCAAGACCACGAAAGTGGTCTTCAAGCTGCTT
CCACTTGAAGTTCATGCAGAAAGCGCTCTGGCTCTCAAGCTCAGCGAATGCCTCCTGAAGCTGT
TGTATCTTGGAGCTTGTCGAGTCCATAAGAGCCGCGACAGACTCCATTTCAGACATGGCGAACG
CTC
Conservation Information
Conserved circRNAs NA
PMCS 0.032860338
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b