Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | AT1G13160_circ_g.2 |
ID in PlantcircBase | ath_circ_002351 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 4485425-4485789 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | PcircRNA_finder |
Parent gene | AT1G13160 |
Parent gene annotation |
ARM repeat superfamily protein |
Parent gene strand | + |
Alternative splicing | AT1G13160_circ_g.1 AT1G13160_circ_g.3 |
Support reads | 5 |
Tissues | whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G13160.1:2 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.214433353 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
4485655-4485786(+) |
Potential amino acid sequence |
MISALRFLLDYENIDDDDDSDAESDDDEESKKIDQVVINRQAVYKQEDEAKAKRALATLCALHK KKIWLGDKNERVAIAICEACFHSSPRIMISALRFLLDYENIDDDDDSDAESDDDEESKKIDQVV INRQAVYKQEDEAKAKRALATLCALHKKKIWLGDKNERVAIAICEACFHSSPRIMISALRFLLD YENIDDDDDSDAESDDDEESKKIDQVVINRQAVYKQEDEAKAKRALATLCALHKKKIWLGDKNE RVAIAICEACFHSSPRIMISALRFLLDYENIDDDDDSDAESDDDEESKKIDQVVINRQAVYK(+ ) |
Sponge-miRNAs | ath-miR5658 |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Chu et al., 2017 |